Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                 --------->ZAT14                               <---------ZAT18                             <---------At4g35610                            <---------ANAC46                       --------->AHL20(2)                           --------->ATHB12                        <---------AHL20(2)                      --------->AHL20(1)                          --------->AHL20(2)                      --------->ARR11(3)           <----------DOF2--------->YAB1    <----------DOF2   <---------ARR11(3)       <----------DOF2    <---------AHL20(2) --------->ARR11(3)   <---------AHL20(1)    <---------ARR11(3)--------->AHL20(2)         --------->GLK1(1) <---------ARR11(3)--------->AHL20(2)       --------->ARR11(3)<---------AHL20(2)        <---------ARR11(3) ------>DOF2  --------->AHL20(2)        ---------->DOF2  <---------AHL20(2)    <-----------GT1   aaagagctttcttcatttacataaaatattcagtggacatagaaaagagctttctttatattttttaattaaaatttgaatttacgacgagatttcaatt  10456300                            ------>ZmHOX2a(2)                           <---------GLK1(1)                           --------->GLK1(1)                           <------ZmHOX2a(2)                          --------->ARR11(3)                          <---------AGP1                          <-----------ARR10                          <---------ARR14(2)                          <---------ARR11(3)                          --------->ARR14(2)                                                  <------                         <---------GLK1(2)                                       <-----------RAV1(1)                         <------ZmHOX2a(1)                     <---------ZAT6  <---------ANAC46                       <---------TOE1(2)        <---------ANAC58            <-----------RAV1(1)    <-                      <---------LBD16           <---------ANAC58     <-----------GT1<---------REM1(1)   tggggtttagaaacagtgtttttctcaggatctctacttgtgaagttttcgcttgtgttttcttagtgttttctccttgtgttgtgttgtagtttttggg  10456400                                                     <----------DOF2                                               <-----------GT1  <---------TOE2(3)                    <---------MYB52(1)                   <---------ANAC55(2) ---LBD16          <----------DOF2     <--------P    <---------DAG2   --------->AHL20(2) ---------DOF2  <---------ARR11(3)    <---------MYB52(1)          ----------->GT1              <-----   gatttatgtagatttcaatttcttttttttttgtattttcggtaagttttatcaactttttttgaaaatcgtataaatacttaagagtgatactcatttt  10456500                                                   --------->AHL20(2)                                                  <---------YAB1                                                --------->YAB1                                                <---------ICU4                <---------YAB1                                               <---------YAB1              <---------AHL20(2)                                               --------->ICU4             --------->AHL20(2)                                             --------->YAB1          --------->AHL20(2)    <---------ANAC58                                             <---------ICU4          <---------AHL20(2)    <---------ANAC58                                             <--------HAHB4 <---------At4g35610            <---------AtLEC2                                  --------->AHL20(2)    <-----------GT1   <---------AHL20(2)                                  <---------AHL20(2)   <-----------GT1<---------AHL20(2)   <---------ANAC46          <----------DOF2  <----------DOF2   --------->ATHB51 ----------->HVH21       <---------ICU4     <---------GLK1(1)     <---------DAG2    -------->ATHB1 --------->At4g35610   <---------ICU4 ----AHL20(2)     --------->At4g35610       --------->ICU4  ----------->RAV1(2)--------->YAB1   -----   ttttttgaattccttttatatgctgagagcttttttttaattttgaattattattatttaacatctgacattttaattttataatcagtaattgcatgaa  10456600                 <---------ZAT14                 --------->ZAT14               --------------->AtSPL8                                                 --------->PCF2               --------------->AtSPL3                                                >>>>>>>>>>WRKY6             <-----------GT1                                                         >>>>>>>>>>WRKY11       -------->ATHB1                                                               --------->WRKY12       --------->ATHB51                                                             --------->WRKY38(1)       --------->ATHB12                                         <----------DOF2 <---------TOE1(3)       <---------ICU4                                  --------->ANAC58         <---------TOE2(3)      --------->ICU4                                   <---------TOE2(3)       ---------->DOF2      <---------YAB1              ------>NtERF2        --------->ANAC58       <---------AHL20(2) -->TEIL <---------YAB1<---------CCA1(2)            <---------ATHB12    <------ZmHOX2a(1)----------->RAV1(1)   tatgaggcattattgttactgtaccatatcgcatgcggcccattttaagcccaaatcaaggaataacttttgaaggacatttaaagttgacccacaaaaa  10456700                                                                                                    <                                                                                           ------>ZmHOX2a(2)                                                                                          <---------GLK1(1)                                                                                          --------->GLK1(1)                                                                                       --------->LBD16                                                                                   <---------ARR14(2)                                                                                 >>>>>>>>>GT-1    <--                                                                       --------->ARR14(2) <------ZmHOX2a(2)                                                           <----------ID1   <-----------RAV1(2) <----          *TSS                                         ---------->DOF2 <---------ARR14(2)<---------ARR14(2)          ------------>CBF   --------->TOE1(3) --------->ANAC58       <---------MYB52(1) --------->ARR14(2)  <----------DOF2            --------->TOE2(3) --------->ANAC58---------->DOF2----------->GT1  <-----   ataactttcatcttcaatttcgaatcgataaccctaatttctcacagacgagcaagagaaagagccaaagccgtttcttcaggtaaatcccgatctccgt  10456800                                                                                                    <                                                                                                    -                                                                                                    -                                                                                                    <                          <---------TOE1(2)                                                         <      <----------DOF2  --------->YAB1                                                              -- -----------GT1   <-------TEIL                                                                  ----- ---------HVH21 <---------GLK1(2)                                                        <----------DOF2 -----MYB52(1)  --------->ARR14(2)                 --------------------->WRI1            ============ --GAMYB        <---------ARR14(2)               <----------DOF2 <----------DOF2        <---------DAG2   tgtcacttctttactccagattcattcgtagtttcgatctatagatttcatctttttgaattcatcgctttcaaagtttttgaattgaagccttttgttg  10456900                  --------->O2                  <---------ANAC46                  <---------ANAC58                  <---------ANAC55(2)                  --------->TGA1a           --------->LBD16           =====================================HOX2a_HOX2a           <------ZmHOX2a(1)  <------MYB46(1)           ------->TEIL         <---------TOE2(3)    <------MYB83==================================HOX2a_HOX2a             - ---------ANAC55(2)       <-----------RAV1(1)       <---------ANAC55(2)                  <---------ANAC46 -------->ANAC55(2)      ------->TEIL     <---------LBD16                              <---------ANAC58 ---------->GT1   <---------O2----------->GT1       --------->ANAC55(2)             <----------DOF2<- ------MYB83      <---------ANAC58        ------>ZmHOX2a(2)                   <---------ANAC58    <-- ------MYB46(1)   <---------TGA1a        <------ZmHOX2a(2)                 <XXXXXXXXXXXXXXXXXXXXXMIR840 ------->MYB59  <---------ANAC46         ===================================HOX2a_HOX2a<---------ANAC58 ---->ATHB12  <-----------HVH21         <---------ARR14(2)           <------ZmHOX2a(1)<---------AtMYB61 ===========================bZIP_DOF    --------->ARR14(2) --------->DOF5.7(2)<---------ANAC58 <-----   ataggtaacttgaggatgtcgcgtgtgtatgttggtaatttggatccgcgagttactgaacgtgaactcgaggatgagtttcgttcctttggtgtgatca  10457000                                                  --------->ARR14(2)                              <--       --------->AHL20(2)                         <---------ARR14(2)                             <---   <-------TEIL                              ----------->GT1             <----------DOF2         <--- ---------->GT1                            --------->ALFIN1     ------>ZmHOX2a(1)       <---------ANAC46 --------------AtSPL8                   --------->DAG2          <---------YAB1        <---------ZAT14 ----ZmHOX2a(1)   <---------DAG2       ---------->DOF2         --------->TOE2(3)      --------->ZAT14 ------RAV1(2)    <----------DOF2  <---------TOE2(3)        <-----------GT1 <---------AtMYB61    <---   ggaggtacataaattgactcctttttggtttttagttgatgtaaagtgtgtgaatttgcatttatcctcattgttcttttggtgtctgtgcagtgtctgg  10457100                                                                     --------->ZAT14                                                                    <---------MYB52(1)                                                                   --------->LBD16                                                                  <---------ANAC58                                                                  <---------ANAC58                                                              --------->DEAR3(1)                                                            ------>NtERF2                                                           --------->ANAC46                                                           --------->TGA2(1)                 --------->ARR14(2)                        <---------bZIP60(1)                 <---------ARR14(2)                        --------->ANAC58        --------->ARR11(3)                                 --------->bZIP60(1)        <---------ARR11(3)                                 --------->ANAC58        --------->ARR14(3) <---------ANAC58              <---------ATERF1(1)  <---------HSFB2a(2)  <---------DAG2                   ----------->TGA1                <------MYB83  --------->HSFB2a(2)  <----------DOF2                  ----------->HVH21               <------MYB46(1) ------P<---------ARR14(3) <---------ANAC58            <-----------HVH21               <---------AtMYB61 ----GAMYB  ----------->RAV1(2)                 --------->CCA1(2) <---------ANAC46    <---------MYB52(1) ------ANAC58 ------>ZmHOX2a(1)           <-------TEIL--------->ANAC46 <---------ANAC46<---------TOE1(2) ------ANAC58 --------->LBD16            --------->CCA1(2) <---------TGA2(1)        <---------MYB46(3)   gttgctagaagacctcctggttacgcttttcttgattttgaagattcaagagatgcccgtgacgccatccgtgaagtagatggtattcgttggtcttcta  10457200  Previous    Next  AGI:  At2g24590.1    Description:  splicing factor, putative. similar to SRZ-22 (SERINE/ARGININE-RICH 22) [Arabidopsis thaliana] (TAIR:AT4G31580.2); similar to SRZ-22 (SERINE/ARGININE-RICH 22) [Arabidopsis thaliana] (TAIR:AT4G31580.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40907.1); similar to hypothetical protein OsI_021190 [Oryza sativa (indica cultivar-group)] (GB:EAY99957.1); similar to hypothetical protein OsJ_019566 [Oryza sativa (japonica cultivar-group)] (GB:EAZ36083.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleot Range:  from: 10456710    to: 10458263    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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