Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                              ---------                                                                                          ------>ZmHOX2a(2)                                                                                         <------ZmHOX2a(2)                                                                       --------->ANAC58  --------->ARR14(1)                                                                       --------->ANAC58  --------->CCA1(2)                                                                <---------ANAC55(2)     <---------ARR11(3)                                                                --------->ANAC55(2)     --------->ARR11(3)                                                                --------->ANAC46        <---------ARR14(2)              ------>ZmHOX2a(1)                                <-------TEIL             --------->ARR14(2)            ------>ZmHOX2a(2)                                --------->ARR14(2)         --------->AGP1 -------->ARR11(3)                                       =============================HOX2a_HOX2a ---------ARR11(3)       <---------ARR14(2)              <------ZmHOX2a(2)     =================HOX2a_HOX2a --------GLK1(1)         --------->ARR14(2)   ----------->GT1<---------ARR14(2)<------ZmHOX2a(1) ------->GLK1(1) ------>ZmHOX2a(1)<---------ARR14(2)   <------ZmHOX2a(1)       ==================HOX2a_HOX2a   gaaatcttgtttgatcctcctatagaggctctggcaaaacctgcacaagcgtaaaaaggatcaaatacgtcccaagtaagaggaatataagatccgaaaa  10433000                                                                                                  <--                                                                                                 <---                                                                                                 ----                            <---------ANAC58                                                     ----                     <--------P <---------ANAC58                                                 <---                   <------MYB83 <---------ANAC46                       --------->YAB1           -----                   <---------MYB46(3)   ------->TEIL                  <---------YAB1<---------ARR11(3)                   <------MYB46(1)<---------MYB46(3)        --------->ANAC46        --------->ARR11(3)              <---------TOE2(3) <---------ANAC58  --------->ZAT14    <---------ARR11(3)         ----- >LBD16       <---------YAB1<---------ANAC58      <---------ZAT14    --------->ARR11(3)        <-----   ttgtgagaagagtattgagattggttagtaccttgcttgttgaatctgtaactgcaatgtctaagtcacaatatcataaccagaaacatcttcaactatt  10433100 -------YAB1--------->CCA1(2)                                              <<<<<<<GRF7 ------AHL20(1)                                              <------ZmHOX2a(2) ----->AHL20(1)                                              ===================HOX2a_HOX2a     <---- ----->AHL20(2)                                             --------->ARR11(3)                <------ ------AHL20(2)                                       --------->HSFB2a(2)----------->HVH21    <------ ---->AHL20(2)              <---------YAB1            <---------HSFB2a(2)------>ZmHOX2a(1)    <------ ---->YAB1 --------->ARR14(2)           <------ZmHOX2a(1)   <---------ARR11(3)    --------->TOE2(3)<- ----YAB1  <---------ARR14(2)           ============================HOX2a_HOX2a  ----------->GT1-----   atattagattgaatatacgaacaaagtcttgtaatagcaagaggagaacatgacttcaagaagatcgaattggtcctgacataatgttaaacaatgtcgt  10433200                                       --------->ARR11(3)                  <---------At4g35610                                   <-----------GT1                    --------->ANAC58                                  <---------YAB1                      <---------ANAC55(2)                               --------->ICU4                         --------->ANAC55(1) -----ZAT6             <---------ARR14(2)                             --------->ANAC58 ---ANAC58             --------->ARR14(2)                             --------->ANAC46              < ---ANAC46   --------->HSFB2a(2)<---------ICU4                        --------->ANAC55(2)         <-- ---ANAC58   <---------HSFB2a(2)--------->YAB1                   <-------TEIL       <-----------RAV1(1) ----------GT1       --------->At5g28300                        --------->CCA1(2)   --------->ATHB12- ------>GT1 <---------LBD16    <---------ATHB51          <---------REM1(2) --------->At4g35610  <----   gttacaaaactgtctctggaaacagtaactgcaattataactatcttgaaaattgtctctacatagatacacacgtaatctgagaattgttggctccaaa  10433300                                                            --------->SPL7          --------->ZAT18                                 <---------SPL7          <---------ZAT18                                 <-----------HVH21          --------->WRKY38(1)                         <---------ALFIN1        ------->MYC3                                 --------->MYB46(3)  -------->HAHB4        <-------MYC3                                 <---------MYB55(2)  <---------ICU4   <---------MYB52(2)                               ------>MYB83        --------->ICU4            --- ------->GAMYB                                      ------>MYB46(1)     <---------ATHB51         <--- --------->TOE2(3)                                --------->AtMYB61  --------->ICU4            ------ ----------ID1                      <---------HSFB2a(2)  --------->DEAR3(1)                  -------- ---------GT1                       --------->HSFB2a(2)<---------At5g28300                   <------- -------->MYB46(3)      --------->MYB46(3)        ------->GAMYB    <---------ANAC46     <----------DOF2 -----MYB52(2)        <-----------GT1            --------->MYB46(3)----------->GT1 ----------->HVH21   taaccacaaacgtggactcatgtgtaaccactagttttctcgagactctcaaccatccaccgtcccatgtcgtaattatgcgaatgtgaccttttatcaa  10433400   --------->CCA1(2)   <------ZmHOX2a(2)  --------->AGP1  --------->ARR11(3)  <---------ARR11(3)  <---------ARR14(2)                                 <---------CCA1(2)  --------->ARR14(2)                              <---------AHL20(2) ------>YAB1                                <-----------GT1 ------ATHB12                            --------->TOE2(3)                            ----------->RAV1(1) --->WOX13(1)                            --------->TOE1(3)                           --------->MYB46(3) ---->CBF             *TSS               <----------DOF2>>>>>>>>>RAP2.2       ------->TEIL --YAB1       <-------TEIL    <----------DOF2<---------TOE2(3)             <---------YAB1   tcaagatccaactacattcatggatttgatttcttttcccaaactttaacattttatatctaaaaccatttcatcttatgaatatcaacaacaatggcag  10433500                                    --------->WOX13(1)                --------->YAB1  -------->HAHB4                             <---------GLK1(1)      ---          --------->TOE2(3)     --------->YAB1                           --------->ATHB12    --------          <-----------HVH21    --------->ICU4                     --------->ANAC46           >>>>>>>>         --------->ANAC46     <---------TOE2(3)              <-----------ARR10           ------>MYB46(1) --------->ANAC58            --------->YAB1  >>>>>>>>>TBF1   --------->ARR11(3)          ------>MYB83 --------->ANAC58          <---------YAB1--------->At4g35610 <---------ARR11(3)    <---------ETT(2) --------->ANAC46     --------->ANAC46 --------->YAB1       <---------GLK1(2)    --------->AGP1   <--   aacaagaaactacgtcaaacataaacaccattaatgatcaagcagaagaagaaacaagaacaaaatctcagccattgatttcaggtctaccaaatgatat  10433600     <----------DOF2     --------------------->WRI1 ------>At4g35610                                                                                   < ->ARR11(3)             ------>ZmHOX2a(1)                                                           - >>GT-1  ---------->ID1<---------ANAC58                                    --------->AtMYB61   ------ -------At4g35610      <---------ANAC58                       <---------AtLEC2            <---------GLK1(2)   agctgagctttgtcttcttcgtcttccttacccataccatgctctatatcgctctgtttcatcttcatggaacaaaaccatcacaaaccctagattcctc  10433700                                                                                                -----     <---------ATHB12                                                                           <----    --------->AtLEC2                                                                           ------    --------->ANAC46                                                                   <---------WRKY18(1)    --------->ANAC58                                         --------->MYB46(3)       --------->WRKY12    --------->ANAC58                                       --------->MYB52(1)         --------->WRKY38(1) ---------HSFB2a(2)              <---------MYB59         <---------ATHB12      <---------GLK1(1)----- -------->HSFB2a(2)             --------->ANAC55(2)  --------->MYB46(3)        --------->WOX13(1) >ZmHOX2a(1) <----------DOF2 ------>ZmHOX2a(1) <----------DOF2      <------ZmHOX2a(1) ----------->HVH21   ttctccaagcaatctctttctatctcttctccttacctatttgtcttcgctttcaacaaatcaacggctaggattcaatggcaatcccttgaccttgcat  10433800                                                                                     --------->TGA2(2)                                                                                    <-----------HVH21                                                                                    <-----------TGA1                                                                                   --------->O2                                                                                   <---------TGA1a                                                                                   --------->TGA1a                                                                                   --------->bZIP60(1)      --------->MYB52(2)                                                           <---------bZIP60(1)      <---------MYB46(3)                                                           --------->ANAC46      <------MYB46(1)                                                              --------->ANAC58      <------MYB83                                                                 <---------O2 <----      --------->MYB55(2)                                  --------->ANAC58         <<<<<<<<<<AtbZIP1     <---------AtMYB61                                    --------->ANAC58         ==================    <---------MYB52(1)                                    --------->ANAC46         --------->bZIP60(2)   <-------GAMYB                            <---------ARR11(3)                     --------->ANAC58  <---------MYB46(3)    --------->ANAC58    --------->ARR11(3)             <---------DEAR3(1)   <---- ------>RAV1(2)         --------->ANAC58    <-----------ARR10         <---------ANAC58        ------- -----At4g35610     ------>MYB83            --------->GLK1(2)         <---------ANAC58<-----------RAV1(2) ->TEIL             ------>MYB46(1)        <---------GLK1(2)<---------ALFIN1   ------>NtERF2  <------ ---->At4g35610<-----------GT1    <----------DOF2      ------>ZmHOX2a(1)  <------NtERF2 --------->At4g35610   ctggccgttggtttgttttacctcccatgccaaactctttcaccaaaatctcgtctcctcacgcactctcatgcgcgtcgatgccacgtcaggggaagct  10433900  Previous    Next  AGI:  At2g24545.1    Description:  other RNA Range:  from: 10432898    to: 10434343    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g24540.1    Description:  AFR (ATTENUATED FAR-RED RESPONSE). Identical to Protein AFR (AFR) [Arabidopsis Thaliana] (GB:Q8LAW2;GB:Q9SJB1); similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G30090.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43927.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043) Range:  from: 10433422    to: 10434674    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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