Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                    --------------->AGL15                  <---------------AGL15                  --------->HSFC1(1)                  <---------HSFB2a(2)                  --------->HSFB2a(2)                 <-----------------AGL2                 ------>ZmHOX2a(2)                --------->CCA1(2)                <------ZmHOX2a(2)                                             <---------ALFIN1               >>>>>>>>>GATA-2                                               --------->MYB46(3)               >>>>>>>>>GATA-1                                             <-----------GT1               >>>>>>>>>GATA-3       <---------MYB46(3)              --------->ARR14(2)               --------->AGP1        --------->MYB52(2)              <---------GLK1(2)               <---------ARR11(3)  <---------MYB52(1)       --------->bZIP60(1)         ---------->DOF2         <---------ANAC58           <---------bZIP60(1) -------->At5g28300      ----------->GT1 --------->MYB52(2) <---------bZIP60(2) --------->GT1 --------->ARR11(3)<---------ANAC58        ----------->TGA1<-----------GT1 ----->GAMYB   >>>>>>>>>GATA-4  <---------TOE2(3)      --------->YAB1<---------ARR14(2)          ---- ---->MYB52(1)--------->GLK1(1)<-----------GT1  --------->GLK1(2)    <---------ARR11(3)     <--------   acggtaataaacaaagagatctagaaatggtatttacgtttgttagtgagattccattgatgacgagaccagatttttcaccactggattggaaacattc  10407200                                           --------->ARR14(2)                                           --------->GLK1(2)                           <---------ARR11(3)      <---------ARR14(2)             <-----------TGA1              <---------ARR14(2)             <-----------HVH21            <---------GLK1(2)          <---------At5g28300           <---------YAB1       <----------DOF2     --------->ARR14(3)      --------->KAN4(2)      <---------ANAC58     <---------ARR14(3)      --------->ARR14(2)      <---------ANAC58     --------->ARR11(3)     <----------TaMYB80         --------->ARR14(2) ------->GT1--------->DEAR3(1)        <-----------GT1                    <---------At4g35610 -HSFB2a(1) --------->ANAC46          --------->YAB1      --------->ANAC46   <---------ARR14(2)    <-   ggtgatttgcttcaccgtcactggaacaagaccttgaaaatcacgattctgcatattcccacaaaacatatacagagcagatttagcaattccaaaatcg  10407300                                                                                                 <---                                                                                                <----                                                                                                -----                                                                                        --------->TOE1(3)                                                                                        --------->TOE2(3)                                                                                     <-----------GT1                                                                                 --------->AHL20(1)                                                                                 --------->AHL20(2)                                      ------>ZmHOX2a(2)        --------->ANAC58  <---------AHL20(2) --------MYB46(3)     --------->GLK1(2)                        --------->ANAC58  <---------AHL20(1)   attgttacagagaaacgtttagcgattcggaaactttcgatctgtagcctaatcggtggaattgaacgaaatggaagatggattatattaccttagcggt  10407400                                                        --------->GLK1(2)                                                    <------NtERF2                                                   --------->LBD16                                                  --------->DEAR3(1)                                                 <------NtERF2                                                 --------->ATERF1(1)                                                 --------->RAP2.3(1)                                                 <---------LBD16                                                --------->ABI4(1)                                                ------>NtERF2                                                <---------ATERF1(1)                                               --------->RRTF1(2)                                               --------->RRTF1(3)                                               --------->ATERF1(2)                                               --------->RAP2.3(3)                                               <---------DEAR3(1)                                               --------->DEAR3(1)                                               <---------ATERF1(2)                                               --------->RAP2.3(2)                                              --------->ATERF1(1)                                              --------->ORA47(2)                                              --------->ERF1                 <---------ANAC58             --------->RAP2.6(1)          <-------TEIL                        --------->RAP2.3(1)        <---------ARR14(2)                    --------->RRTF1(1)        --------->ARR14(2)                    --------->DEAR4(2)       <---------HSFB2a(1)                   <---------ATERF1(1)       <------ZmHOX2a(1)                     --------->LBD16 <------NtERF2    <------ZmHOX2a(1)                        ------>NtERF2<---------LBD16  --------->ALFIN1                           --------->At4g35610  --------->MYB59<---------ZAT2 <------ZmHOX2a(1)                          --------->ANAC46--------->LBD16      <---------At4g35610< ------MYB46(3)  <---------ANAC58        ------->TEIL ---------->DOF2            --------->At4g35610- -----AtMYB61 <---------TOE2(2)          --------->ARR14(2) <---------RAP2.6(3)  --------->ZAT2     < ---->ALFIN1  <---------TOE1(2)          <---------ARR14(2)--------->RAP2.6(2) <---------RAP2.6(2)  -   ggaggaggaggattcgtaggcttgagaaggttgagaagacatgaatccgccgccggagaagccggaattaggctcgaattggctgctggagaacattttc  10407500                                                                                             <-------           ----------->GT1                                                                   --------          ----------->GT1                                                      <---------ARR14(2)    --------->ANAC58                                                           <---------ARR14(3)    --------->ANAC46           --------->ZAT14                                 --------->ARR11(3)    --------->ANAC58           <---------ZAT14       ------------------------>ANAC81        --------- --------->TOE1(2)             --------->REM1(2)    --------->DAG2             --------->ARR14(3) ---------ZAT2           --------->MYB52(1)        ---------->DOF2             <---------GLK1(2) -------->HSFC1(2)    --------->ANAC58     <------ZmHOX2a(1)        *TSS       <---------ARR11(3) ---------HSFC1(2)    --------->ANAC58   <---------TOE2(3)       ---------->DOF2    <---------LBD16 < -------->ZAT2      ---------->DOF2   --------->CCA1(2)     ---------->DOF2  ----------->ARR10<------   gaagctacgaaatcggaaaatcgaaagtaactgtgaagagatttaggaagttgaaaagtgatcaaagtaaagggaagagaagattttgggggaattttaa  10407600                                                                                                -----                                                                                             --------                                                                                            <--------                                                                                        <----------DOF2                                                                                     <---------AHL20(2)                                                                                     <-----------GT1                                                          <---------ICU4         <---------YAB1 <----                                      --------->ATHB12 --------->WOX13(1)        <---------AHL20(2)                                     <---------YAB1  ------------>CBF           <---------AHL20(1)                              ------------>CBF      ------>NtERF2               --------->AHL20(2)   --------->ANAC58     <-----------GT1             --------->LBD16             <---------AHL20(2)   --------->ANAC58   <----------TaMYB80           <<<<<<<<<<E2Fa               --------->AHL20(1) --AHL20(2)           --------->HSFB2a(1)          --------->ANAC58          --------->YAB1--------->AHL20(2) ->AHL20(2)           <---------HSFB2a(1)          --------->ANAC46          --------->AHL20(2) <---- >YAB1               <---------ARR14(2)            --------->ANAC58  >>>>>>>>>GT-1<---------ICU4----- ----------ID1       --------->ARR14(2)      <---------At4g35610   --------->At5g28300  <---------DAG2 ---YAB1        <---------LBD16    --------->YAB1 <---------LBD16 ----------->GT1--------->AHL20(2)   tagcgacgaaagaatttttgggggattttccctccaattttgattagagcttcccgccaattagggcgaggtaaatctataatataattactttttaata  10407700             --------->ZAT14                                                                     <--- ---->AHL20(2)                                                                                  <---- ->YAB1 <---------LBD16                                                                         <---- -AHL20(2)--------->LBD16                          --------->LBD16                              ----- -----AHL20(1)                                   <---------LBD16                          --------->ALFIN1 -----AHL20(2)          --------->ZAT14       <----------DOF2      --------->ATHB12  ----------->HVH21 ---->AHL20(1)          <---------ZAT14  ---------->DOF2          <---------YAB1   ------>ZmHOX2a(1)   aattcagttctccggtttactctcagttcagtttattcgactcaaaagctttccggtttagaagacttatgatttcgatgggctcctgtgaagttgggct  10407800                                                                                          ---------->DOF2                                                                                       --------->YAB1    <----------DOF2                                                                   <---------AHL20(2) ----GAMYB                                                                      ----------->GT1 -------RAV1(1)          <-----------GT1                 ----------------->AGL1----------->GT1   ---- -----MYB46(3)       <----------DOF2     <----------DOF2 <---------ANAC58      <---------ZAT6   ----- ---->MYB55(2)   --------->MYB59   ------>ZmHOX2a(1)     <---------ANAC58    ----------->GT1    <----   gttggactttggaaagagttaggctttaaacttgttcctctctcttttgaaacagtagtgcctgtaagagagagcaatagagtgataaataataaagaga  10407900                    <---------ANAC58                    <---------ANAC58                <---------GLK1(1)                --------->CCA1(2)               <---------ARR14(2)               <---------ARR11(3)               --------->ARR14(2)             --------->ANAC58   <-----------GT1                                   <-----------GT1             --------->ANAC58<---------ARR11(3)                               <----------DOF2      <-   <---------MYB46(3)  --------->REM1(2)                                     --------->TOE2(3)<------ ----->CCA1(2) --------->ARR14(3)                 <---------ARR14(2)   <<<<<<<<<<ATML1      --------- ---->ARR11(3) <---------ARR14(3)                <------ZmHOX2a(1)     <<<<<<<<<<PDF2   --------->AHL20(2) -----ARR11(3) --------->ARR11(3)    <---------LBD16  ----------->GT1<---------ZAT18    <---------AHL20(2)   tatagtggatgatgcaagatattcgtgtcgagatttactcgcggtttgtgaggaactcgtaaatcgacctgtgcatttacctttatacaatttatcaaga  10408000                                                              --------->ZAT14                                                              <---------ZAT18                 -------                                                              <---------ZAT14             --------->ATHB12                                                              --------->ZAT18            <---------YAB1                                                            <---------------AtSPL8     ---------->DOF2       --------->DAG2                                       --------------->AtSPL8  --------->At4g35610 --------STY1(2)                                          --------->DAG2         <---------At4g35610- ---YAB1   --------->ZAT14  --------->DOF5.7(2)          ---------->DOF2   --------->ATHB12 <-------- >YAB1---------->DOF2       <---------MYB52(1)      ----------->GT1       <---------YAB1 --------->ICU4   tagctagagaaagtgaagtcgagagcattcgttatctaaaacaaatgtatagataagtgaaaagtgtactagatttatgatttagcagataaagattgat  10408100  Previous    Next  AGI:  At2g24490.1    Description:  ATRPA2/ROR1/RPA2 (REPLICON PROTEIN A); protein binding. similar to replication protein-related [Arabidopsis thaliana] (TAIR:AT3G02920.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43229.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Replication protein A C terminal (InterPro:IPR014892); contains InterPro domain Nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain Replication protein A, subunit RPA32 (InterPro:IPR014646); contains InterPro domain Nucleic acid-binding, OB-fold (InterPro:IPR012340); contains InterPro doma Range:  from: 10405484    to: 10407568    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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