Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        ------>NtERF2     --------->DEAR3(1)     <---------ALFIN1    --------->MYB46(3)    <---------ABI4(2)    <------NtERF2    --------->ERF1    --------->ATERF1(1)   ------>NtERF2   <---------ATERF1(1)   <---------RAP2.6(3)  --------->ANAC58  --------->ANAC46  --------->ANAC58  >>>>>>>>>AtERF-5  >>>>>>>>>AtERF-1  >>>>>>>>>AtERF-2  >>>>>>>>>AtERF-4  >>>>>>>>>>AtTINY2  --------->RAP2.3(3)  --------->RRTF1(3)  <---------ATERF1(2)  --------->DEAR3(1)  >>>>>>>>>AtERF-3  --------->ATERF1(2)  --------->RAP2.6(2)  --------->RRTF1(2)  >>>>>>>>>AtERF-7  --------->RAP2.3(2) --------->RAP2.3(1) <------NtERF2 --------->DEAR3(2) --------->ORA47(2) --------->ERF1 --------->RRTF1(1) --------->ATERF1(1) -------->ZAT2 -------->At4g35610 ----->NtERF2 ---------At4g35610 -------->ABI4(2) ---------ATERF1(1) ---------RAP2.3(1) ------->DEAR3(1) --------ARR14(2) ------->ARR14(2) ------>RAP2.3(1) ------>ATERF1(1) ----NtERF2 ------ATERF1(1) ------RAP2.3(1) -----ANAC46 -----DEAR3(1) ---->ALFIN1 ----LBD16 >NtERF2 <---------SPL7 ----At4g35610 --->ATERF1(1)                                                           <---------MYB46(3)    <----- -NtERF2--------->DEAR3(1)                                   <---------MYB52(1)               ------- ---RAP2.3(1)                                              <---------ANAC46                   <------ ---RRTF1(1)                                         <---------ANAC58    <------MYB83       --------- --RAP2.3(2)                                   <---------ANAC46     ================================= --DEAR3(1)                                    <---------ANAC58     ------>ZmHOX2a(1)    ============ --RRTF1(2)                          ----------->RAV1(2)   <---------ANAC58           ------>ZmHOX2a(1) >At4g35610   ----------->RAV1(1)  --------->ANAC58  <---------ANAC46    <------MYB46(1) ------>ZmHOX2a(1) -At4g35610 --------->MYB46(3)     --------->ANAC58  <---------ANAC58  <--------P     =============== -LBD16<------NtERF2 --------->At4g35610 <---------TOE2(3) <---------ANAC58 <-------TEIL<---------ALFIN1 --RAV1(1) --------->SPL7 <---------ETT(2)     <---------ANAC58  ---------->ID1  --------->WOX13(1)   ggagccgccaccgtaccaccagtagctgtagacgcgctcgcctgaggttgcgtttgcgtttgcgtttgtccttgttggttcatcaatcctcctcccgatc  10328900                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                -----                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              -------                                                                                             <-------                                                                                             --------                                                                                            ---------                                                                                           ------>ZmHOX2a(2)                                                                                           <---------LBD16                                                                                          --------->ARR14(1)                                                                                          <------ZmHOX2a(2)                                                                                         --------->AGP1                                                                                         --------->ARR14(2)                                                                                         --------->ARR11(1)                                                                                         <---------ARR14(2)                                                                                         --------->ARR11(3)      <-----------GT1                                                                   <---------GLK1(1) -ZmHOX2a(2)                                                                            --------->GLK1(1) -->ARR14(2)                                                                           ----------->ARR10 ---ARR14(2)                                                                       ==============HOX2a_HOX2a >LBD16                                                       ----------->RAV1(2)  ===============HOX2a_HOX2a =HOX2a_HOX2a                                               <-----------GT1---------->DOF2--------->CCA1(2) =HOX2a_HOX2a                               ---------->DOF2--------->KAN4(2)     --------->MYB59<---- =HOX2a_HOX2a                  ----------->GT1    ---------->DOF2--------->MYB52(1)<------ZmHOX2a(1)   cctatatttcaccataagtctcgttttcaagaagagaaaaacttagaaaagagaaagagattatacctgagggatttgaaagttaggaagagatccggcg  10329000    --------->ANAC58    --------->ANAC58  ---------->DOF2 -------ANAC46                                               --------->At4g35610 ---NtERF2                    <------ZmHOX2a(1)              <---------At4g35610 ----->ATERF1(1)      --------->WRKY12                 <---------YAB1 ->NtERF2 --------->YAB1      --------->ATERF1(1)      --------->ICU4 ----DEAR3(1)         ----------->HVH21   ---------->DOF2  ------>ZmHOX2a(2)              --------->ALFIN1 ----->HVH21         --------->ALFIN1 --------->WOX13(1)--------->ATHB12                 --------->LBD16 --->DEAR3(1)      <---------ANAC58 --------->ICU4   <---------ICU4                     <---------ANAC58 -->ATERF1(1)      <---------ANAC58 <---------YAB1   --------->YAB1         --------->ETT(2)      --- --ATERF1(1) ---------->DOF2  ====================================HOX2a_HOX2a<---------DDF1   ------- ->LBD16 <---------YAB1      <---------ATERF1(1)    <---------YAB1          <---------ETT(2)  ------- >TOE1(2)--------->ICU4     --------->ALFIN1      --------->YAB1     <---------ANAC58   <---------ANAC46 -----ATERF1(1)    <---------ANAC46 <---------ATHB12--------->ICU4   <---------ANAC58   <---------ANAC58   acggagaagccattataaagagcgtggacggaggagccatcattcaaaggcatcatcatgatcggctgattccttgagtcgacatcgtggccgtggaagc  10329100                                                  <------ZmHOX2a(1)                                               <------NtERF2                                              <---------TOE1(1)                                             <------NtERF2                                           <---------PCF5                                           <---------PCF2                                         <-------PIF5                                        <---------O2                                        =======================bZIP_DOF                                        <---------TGA1a                                        --------->O2---------->DOF2                                        --------->TGA1a                                       <---------LBD16  <---------ARR11(3)                                      <---------ALFIN1  --------->ARR11(1)                                     ---------------->PIF3(2)  ------>ZmHOX2a(2)                            ------>NtERF2------->PIF5 ----------->ARR10 ------>MYB52(1)           --------->DEAR3(1)--------->ATERF1(1)   <------ZmHOX2a(1) -->ANAC58                 ----------->HVH21------>NtERF2--------->CCA1(2)              <---------MYB46(3) -->ANAC58  <------ZmHOX2a(1)      <---------PCF5 ====================HOX2a_HOX2a--------->ETT(2)   catcggagggaagaggatgagcatcatcgacgacggagggccacggggccgaggaaaagatttgatcgaggaagtcttcgtggtcgaaagttgttgatgg  10329200                                                            --------->ATHB12                                                           --------->ICU4                                                         --------->YAB1                                                        --------->ICU4                                                        <---------YAB1                                                      --------->YAB1                                                      <---------ICU4                                                     <---------YAB1                                                     --------->ICU4                 <----------DOF2     --------->CCA1(2)                             <---------ICU4                   <---------DAG2     <---------GLK1(1)                             --------->YAB1                <---------ALFIN1    --------->ARR14(2)       <------ZmHOX2a(1)    --------->ICU4       <---------At4g35610    <---------ARR14(2) >>>>>>>>>TBF1           <-------TEIL<---------YAB1 <---------At4g35610      --   agtttggatatgggaagaagatgaagaagaaggagttagaagagaagagttcatcatgatgatgatgggtttcttctgcttctacacttttttttgggaa  10329300                                                                      <---------AHL20(2)                                                                     <---------AHL20(2)                                                                     --------->AHL20(2)     <--------                                                                   <---------YAB1         --------->YAB1                                                                  <---------AHL20(2)     <---------YAB1                                                             <---------AHL20(1)         <-----------GT1                                                             --------->AHL20(2)        <---------ICU4                                                             --------->ARR11(3)        --------->YAB1                              --------->YAB1                 <---------ARR11(3)       --------->ICU4                             <---------YAB1                  --------->AHL20(1)    <---------AHL20(2)                         <----------DOF2      <---------REM1(1) <---------AHL20(2) <---------YAB1  *TSS        <---------TOE1(3)   --------->DAG2            --------->CCA1(2)      --------->AHL20(2)  ----------->GT1        <---------DAG2  <------------CBF  <---------ARR11(3)<---------TOE2(3) --------->GT1<---------TOE2(3)  ---------->DOF2           --------->ARR11(3)<---------TOE1(3)   gaggttgaaaaatgttgaggtttatagctttattataaagcagaattgttgtagtcttgtagatatattattttaattttaggttttaattatcattttt  10329400                --------->TOE1(3)                --------->TOE2(3)           <---------AHL20(2)                                                               <--------         <---------YAB1                             --------->ANAC58        ------->TEIL--------->YAB1      <---------AHL20(2)                            -------->P           <---------YAB1<---------YAB1      <---------YAB1---------->DOF2                 --------->ANAC58  <---------YAB1 --------->YAB1   --------->AHL20(2)                         <--------P              --------->ICU4<---------YAB1   --------->AHL20(1)      <----------DOF2   <-------GAMYB       <---------ANAC58 --------->YAB1   <---------AHL20(1)   <---------ARR11(3)  <---------MYB46(3)   <---------ANAC58--------->ICU4     < -YAB1--------->AHL20(2)--------->ARR11(3) <---------TOE2(3) <---------AHL20(2)  <---------YAB1     <   ggtgatatattattaaaaccttaaaagaacttttgtttttctattgtggttagcaacccatattatatcgtgatgatgaatcgatgattatcatcttttg  10329500                                                  <---------YAB1                                                 <---------AHL20(1)                                                <---------ICU4                                               <---------YAB1                                               --------->ICU4                                             --------->YAB1                                             <--------HAHB4                                             <---------ICU4                                            <---------ATHB12                                            --------->ICU4                                       --------->TOE2(3)           --------->ANAC55(2)      <---------ANAC58                 --------->YAB1              --------->ANAC55(1)         <-----      <---------ANAC58               <-----------ARR10             <---------ANAC55(2)         ------   --------->ARR14(2)                <---------ARR11(3)            <---------ANAC55(1)     <---------TOE2(3)   <---------ARR14(2)                --------->ARR14(2)    <---------At4g35610             <--------- --DOF2                              <---------ARR11(1) <---------At5g28300              <---------AHL20(2) ---------ANAC58                    <---------CCA1(2)  <-----------GT1                  <---------AHL20(2) ---------ANAC58           <----------DOF2  <---------YAB1 --------->At4g35610     <----------DOF2   tttcgtttccgtcttaaactttggtttctctttaccccaaatcttaatcattattttttacagcttaatacgtatgaaaataagtctttttttaatgtac  10329600                                      --------->At4g35610                             <xxxxxxxxxxxxxx                                      <---------At4g35610               --------->AHL20(1)                               <---------DAG2                           <---------AHL20(1)                               <----------DOF2                        --------->AHL20(1) --TEIL                     <-----------GT1                           <---------AHL20(1) ->TEIL  ---------->DOF2 <---------YAB1                              --------->AHL20(2)        ------ ------AtSPL8         <---------AHL20(2) <-------TEIL     <-----------GT1             <---------WOX13(1)   atattgctatctaaagagttttatttgattatactttttcagatgcaaactagttttattttactatacaaatatatattaaacattgatggataagaag  10329700                                                                                      <---------YAB1                                                                                     <---------AHL20(2)                                                                                     <---------AHL20(1)       <-----------RAV1(1)                                                         <---------YAB1   --------->AHL20(2)         <----------DOF2                                   <---------AHL20(2)   <---------AHL20(2)   --------->STY1(2)  --------->YAB1                       --------->AHL20(1) xxsmallRNA(i)          <---------STY1(2) <---------YAB1                        --------->AHL20(2) ----->GT1     <---------ANAC46           <---------ATHB51    --------->TOE2(3)--------->AHL20(2)   tttatttatatggtgctaagtgtaatagctagcttttgtatacaattatagttttcttagataacatttattgtttagcaattttattatttttgtgttt  10329800  Previous    Next  AGI:  At2g24260.1    Description:  basic helix-loop-helix (bHLH) family protein. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G30980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO66689.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 10326414    to: 10329302    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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