Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 <---------AHL20(2)                                                               --------->AHL20(2)                                 <---------------AGL15        --------->AHL20(2)                                 --------------->AGL15        --------->AHL20(1)     ----------->GT1                        <<<<<<<<<<WRKY26                      <---------AHL20(2)    --------->DAG2                        <<<<<<<<<<WRKY38                      <---------AHL20(1)  ---------->DOF2                        --------->WRKY18(1)             ------>MYB46(1)        <---------HSFB2a(2)                      <------MYB83                 >>>>>>>>>>WRKY38            --------->HSFB2a(2)  --------->DAG2      <------MYB46(1)              >>>>>>>>>>WRKY26       --------->DAG2 --------->DOF2      --------->MYB59               >>>>>>>>>>WRKY43     ---------->DOF2         ----- ------TOE2(3)--------->TOE2(3) ----------------->AGL3  ------>MYB83  <---------HSFB2a(2) <---------At4g35610 ---DOF2    <-------TEIL<<<<<<<<<<WRKY43           <---------WRKY18(1)--------->HSFB2a(2) --------->At4g35610   tggaaaggcgaaggtacattagtttggtcaagtttccaattgaagatggaacttgaccaactaatttattttccgaaaggtcgagaaaggtgagatgaga  10277300                                                                --------->CCA1(2)                                                               <---------ARR14(2)                                                     <------MYB46(1)                   --------->GLK1(2)                 <------MYB83                  <---------GLK1(2)                 --------->MYB59                        <------MYB46(1)              --------->DAG2                        <---------AtMYB61        ---------->DOF2      ------>ZmHOX2a(1)                  --------->MYB52(1)    <---------ARR11(3)          <------MYB83 ----->DOF2  ---------->DOF2            --------->ICU4         --------->ARR11(3) --------->ZAT18----   aagggttcctaatgaaaaaggaatctctccatagagattgcaataacgaagggttaggttttggagatattggagtttgaaaagaccactatttggtttt  10277400                                                               ------->MYC2                                                               ------->MYC3                                                               <-----------HVH21                                                               <-------MYC3                                                               <-------MYC2                                                              --------->O2                                                              <---------O2                                                              <---------TGA1a                                                              --------->TGA1a                                                              --------->bZIP60(2)                                                              --------->ANAC58                                                 <<<<<<<<<<AGL20                                                 <<<<<<<<<<AGL22                                                 <<<<<<<<<<AGL24----------->HVH21                                                --------->ICU4<---------ANAC55(2)                                              <---------------AGL15                                              --------------->AGL15                                             <-----------------AGL2                                        <---------O2          --------->ANAC58                --------->ANAC58        --------->At4g35610   --------->ANAC46                --------->ANAC58        ----------->RAV1(2)   --------->ANAC55(2)                <----------ID1----------->GT1----------------->AGL2                         <--------         <---------TOE2(3)   --------->DAG2  <-----------------AGL3                         ---------         <---------YAB1     ============================================bZIP_DOF        <---------ICU4         <---------TOE1(3)  ---------->DOF2  ----------------->AGL3                    --------->MYB46(3) --------->ALFIN1         --------->ARR11(3) ----------------->AGL1                    <---------ATHB12 ------>DOF2    --------->ANAC46        --------->ZAT2        --------->ANAC55(1)    --------->WOX13(1)   aaagtgttgttaagattaacgccaagaagataaagtgaaatcacctggccatatttagcatcacacgtgacagactcccaagaacagcaatcactgctct  10277500                                                                                                   --                                                                                                -----                                                 --------->ARR14(2)                           -------                                                 <---------ARR14(2)                           <------NtERF2                                         <---------At4g35610                                 <-------                                     <-----------ARR10                                       --------                                     --------->ARR14(2)                                      <-------                                     <---------ARR14(2)                                      ------>NtERF2                                    <---------CCA1(2)                                       <--------                            <---------MYB52(1)   <---------GLK1(2)                          <--------                           --------->LBD16     --------->LBD16                              <--------                          <---------HSFB2a(2) --------->LBD16                               ---------                <-----------GT1  <-------TEIL --------->HSFB2a(2)                           <--------    ----------->HVH21    <---------LBD16 --------->At4g35610                               --------->RAP2.6(3) -ZAT14<---------bZIP60(1)--------->HSFB2a(2) <---------HSFB2a(2)                      <---------ICU4 >ZAT14--------->bZIP60(1)--------->ANAC46   <---------LBD16         ---------->DOF2  <---------YAB1   tgttccatgacctcatattttcaagtctccggaagttcatatctgctcccggaaactcgtgtttgaactccaaaagagcatccctctgatcatggcggca  10277600       <---------SPL7      <---------ANAC46    <---------PCF2   ----------->TCP11(1)  <---------MYB46(3)                                                                             <--- --------->ALFIN1                                                                           <-------- ----->GAMYB                                                                                *TSS <--- ---->MYB52(1)                                                                            <---------TOE2(3) -->ATERF1(1)                                                                             <---------YAB1 --RAP2.3(1)                                                                 --------------->AGL15 ->RAP2.6(2)             --------->ALFIN1                                    <---------------AGL15 --ATERF1(1)             <---------ANAC46                                   <-----------------AGL1 -ANAC46                <XXXXXXXXXXXXXXXXXXXXMIR4239                        ----------------->AGL3 -DEAR3(1)             --------->ALFIN1                                     ----------------->AGL1 -RAP2.6(2)    --------->ANAC58    ------------------------>ANAC81--------->YAB1 ---------->DOF2 <--- >ATERF1(2)    --------->ANAC58   --------->MYB52(1)        ----------->GT1 <-----------------AGL2  < -ATERF1(2)<------ZmHOX2a(1)----------->GT1     --------->At4g35610         ----------------->AGL2  <   acggtgggccgtaggagaagcaagagtgtgtggaaaaaacgaaaacaaggagatgaaatacaaggtaataacaacaataccattaaaggaataagattgg  10277700                                                                   <---------ANAC58                                                              --------->YAB1        --------->ATHB12                                      -------->HAHB4        <---------ICU4                               <------MYB46(1)        --------->YAB1                               ----------->GT1 <---------At4g35610       --------->ICU4                       <-------GAMYB    --------->ICU4       <-----------TBP       <---------YAB1                      <---------MYB46(3)<---------YAB1     <---------------AGL15     --------->YAB1                       <---------AtMYB61  <---------ATHB51   --------------->AGL15 ------ANAC58                           <-----------RAV1(1)<---------ICU4       <----------DOF2 ----- ----CBF<--------HAHB4                  <---------ANAC58   --------->YAB1      <-----------------AGL3 ------ANAC46                           <---------ANAC46  --------->ICU4   ------>ZmHOX2a(2)   <----- ------ANAC58               <---------TOE2(3)   <---------YAB1<---------ICU4   ----------------->AGL3 ------MYB83           <XXXXXXXXXXXXXXXXXXXXMIR829.2 <------MYB83  <---------ANAC58  ---------->DOF2 ------MYB46(1)  <----------DOF2        <---------ANAC58  <---------YAB1  --------->GLK1(1)----------   cttggtatcatcattacttcttttgtttttaagttttagtttgtgtggttgtgataggttataattatggcttctgatctctctttataaagaaccaata  10277800                                                             --------->WRKY38(1)                                                       ----------->HVH21   --------->ANAC58                                                 <---------WRKY12          --------->ANAC58                        <----------DOF2       <---------bZIP60(1)        <---------ALFIN1                --------->ARR11(3)            <---------ANAC46   --------->MYB46(3)   ----------->HVH21 ---->YAB1     <---------GLK1(1)         --------->ZAT14     --------->WRKY12       <---------ANAC58 ----ATHB12    <---------At4g35610--------->ZAT6--------->DOF5.7(2)<-----------HVH21<---------ANAC58 -->CBF    --------->ALFIN1    --------->ZAT14<---------ETT(2)<---------WRKY18(1)   >>>>>>>>>>WRKY18   acaaaaatcagttgtggagctcttgactttcggtgaacactagtactgtcgtcaactctgacattgacccatcacacactctattgacttgacattgtcg  10277900                                              --------->AHL20(2)                                              <---------AHL20(2)    <---------ANAC58                                             <---------YAB1         <---------ANAC46      -----------               <-----------GT1             --------->YAB1           <---------ANAC58--------->YAB1        <----------DOF2                   <---------YAB1  --------->CCA1(2)        <---------ATHB12     --------->ARR11(3)       <---------AHL20(2)       <---------TOE1(3)           <<<<<<<<<ARR2     <---------ARR11(3)       --------->AHL20(2)       <---------TOE2(3)      <-----------GT1  <-----   atttcattatcttttttttacaattcaaaaattttaatgccttcattataaatttttaaggtataagttttcttggaatttcacaatcaaaatcgttaca  10278000                                                                                                    -                                                                                                 ----                              ---------->DOF2                                                    ----                        <-----------RAV1(2)                                                      ----                        <---------HSFB2a(2)                                                      ----                 <---------ANAC58                ----------->HVH21                               <--- >GT1<------ZmHOX2a(1)  --------->HSFB2a(2)    ----------->GT1                                   ---- ----YAB1        <---------ANAC58            <---------GLK1(1)                               <------ZmHOX2a(1)   atagagaggagcatgagtaacttgtgccagaagaaagagtgtttgggaaatgtgacatagaaaacgaattgggcattttcagtctcaatggtttaggaga  10278100 ---------->RAV1(1)                                                <---------TOE2(3) ----->ANAC55(2)                   --------------->AGL15           <---------TOE1(3) ----->ANAC58            --------->AtLEC2                         --------->MYB52(1) ----->ANAC46          <---------ANAC58                   <---------ANAC58               <---------ATHB12 ----->ANAC55(1)       <---------ANAC58                   ----------->GT1         <----------ID1 ------ANAC55(2)<---------DAG2     <---------------AGL15  <---------ANAC58    ---------->DOF2 ----->ANAC58   <----------DOF2   <-----------------AGL2  <---------ANAC46  <---------YAB1          -   cgcaacatttccattggactttttgacttgcaaaattcttcatatggaagagtcagtgaggcgtgaattaagggtttcatgaaagagacaaatgatcaaa  10278200  Previous    Next  AGI:  At2g24160.1    Description:  pseudogene, leucine rich repeat protein family, contains leucine rich-repeat domains Pfam:PF00560, INTERPRO:IPR001611; contains some similarity to Cf-4 (Lycopersicon hirsutum) gi|2808683|emb|CAA05268; blastp match of 37% identity and 8.4e-98 P-value to GP|2808683|emb|CAA05268.1||AJ002235 Cf-4 {Lycopersicon hirsutum} Range:  from: 10275088    to: 10277692    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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