Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                              <---------ANAC58                            <---------ANAC58                         <------MYB46(1)                         <------MYB83                        <---------MYB46(3)                        --------->MYB55(2)                       --------->ALFIN1                 <-------TEIL                                                       --------->ANAC58                <------ZmHOX2a(2)                                                   --------->ANAC58               --------->ARR11(3)                           <-------TEIL     <---------ARR14(2)               --------->AGP1                          ---------->DOF2       --------->ARR14(2)    <-               <---------ARR11(3)                ------>NtERF2               <---------GLK1(2)     <-              <---------GLK1(1)                 --------->DEAR3(1)          <------ZmHOX2a(1) <------              --------->GLK1(1)                 <---------ETT(1)      <---------ETT(2)      ---------      ---------->DOF2  <---------ANAC46         ----------->HVH21     --------->ETT(2)    ------>ZmHOX2a(1)   ttgagaaacaaagcagagatccatggtgggtcttgcataaacagtcttctccgaccagaaagtccattcctttcgacaggattctcaagctcctcaatca  10261300                                                                            <---------MYB59                                                                          ------->TEIL                                               --------->ARR11(3)       <---------ZAT14       <----------DOF2                   <---------HSFB2a(2)            --------->ZAT14     ----------------->AGL3              <---------HSFC1(1)             --------->ZAT18     <-----------------AGL3              --------->HSFB2a(2)     --------->ALFIN1 --------ANAC58                    --------->ICU4               --------->LBD16                 <---- --------ANAC58                    <---------YAB1              <---------ANAC46            <---------GLK1(1) ---ATHB12                         ------>ZmHOX2a(1)           <---------ANAC58<---------ARR14(2)   < >WOX13(1)           <---------ANAC46<---------GLK1(2)         <---------ANAC58--------->ARR14(2) ---   agcttgctcctttaatggttccagcgtatgaagagtcctgattctcgaagctctcgatgagattgccgtggaagtgaaccgaattcgaaatgggtttctc  10261400                                                                                             <------NtERF2                                                                                           <---------ANAC46                                                                                          ------>NtERF2                                                                                          <---------LBD16                                                                                          <------NtERF2                                                                                         <---------RRTF1(1)                                                                                         <---------RAP2.3(1)                                                                                        <---------RAP2.3(3)                                                                                        <---------DEAR3(1)                                      >>>>>>>>>TBF1                      ---------->DOF2<---------RRTF1(3)                                   >>>>>>>>>TBF1                 <---------SPL7         <---------RRTF1(2)                                >>>>>>>>>TBF1                   <---------ANAC46        <---------RAP2.6(2) -----ANAC46                 >>>>>>>>>TBF1 --------->At4g35610  <---------ANAC58        <---------RAP2.3(2) ---------DOF5.7(2)       >>>>>>>>>TBF1    <---------At4g35610  <---------ANAC58       <---------LBD16 ------>DOF5.7(2)     <------ZmHOX2a(1)   --------->GLK1(2)  --------->ALFIN1         <-----------RAV1(1)   gtgaacggagagggaagtagaagaggaagaagaagaagaagaagaagctgaaatcggaagtgagtggcgttcgaagaaaggaagggttttgcggcggaag  10261500                                                                                                <----                                                                                                <----                                                                                                -----                                                                                              -------                                                                                              <------NtERF2                                                                                              <------                                                                                             <------NtERF2                                                                                             <-------                                                                                             --------                                                                                             --------                                xxxxxxxxxxxxxxx>smallRNA(fl3)                                ------>NtERF2                               --------->TGA1a                                               --------                               <---------TGA1a                                              ---------                               --------->O2                                                 ---------                               =======================================MYC_MYB               ---------                               ==============================================bZIP_DOF       ---------                               <---------O2                                                --------->RAP2.6(1)                               <---------ANAC46                                            --------->RAP2.3(1)                            ----------->HVH21                                              --------->RRTF1(1)                          <---------At4g35610                                              --------->ATERF1(1)                          ===================================================bZIP_DOF      <------NtERF2                          <---------ZAT2                                                  --------->At4g35610                          --------->At4g35610                                             ------>NtERF2                          --------->O2                                                    <---------ATERF1(1)                          --------->ZAT2   <---------ANAC46           <---------TOE2(3)  --------->DEAR3(1)                          <---------O2     <------MYB46(1)            <---------TOE1(3)  --------->RAP2.6(2)                          ============================================MYC_MYB            --------->RAP2.3(2)             <------ZmHOX2a(1) <---------bZIP60(1)                <----------DOF2        <---------DEAR3(1)           --------->ALFIN1 ----------->TGA1                    <------MYB83            --------->DEAR3(2)       --------->ALFIN1   --------->bZIP60(2)                   <------MYB46(1)         --------->RAP2.3(1)      <------ZmHOX2a(1)   --------->TGA1a  <---------ANAC58     <---------ANAC46        --------->ERF1    --------->ALFIN1      <---------TGA1a  <---------ANAC58    <------MYB83             --------->ATERF1(1)   --------->ATERF1(1)  <-----------RAV1(2)<------MYB83        <------MYB46(1)         --------->At4g35610   <------NtERF2     --------->ANAC58     --------->MYB46(2) --------->ALFIN1          <---------ATERF1(1) --------->ALFIN1    --------->ANAC46     --------->MYB111(2)<--------P <------ZmHOX2a(1)--------->ANAC46 <---------DEAR3(1)  --------->ANAC58     <---------AtMYB61<---------MYB46(3)     <------ZmHOX2a(1) -   agggcggaggagggaggaggtttaagccaggtgacgagagaagtttggtgttggaaatgagaggttgggtttaaggagagagaaggagaagccgccgcag  10261600      --------->AtLEC2 --------->ANAC58 --------->ANAC58 --NtERF2 -----At4g35610 ---->At4g35610 -->ATERF1(1) -----RAV1(2) --At4g35610 ->ABI4(1)                           --------->ARR11(3) ->LBD16                           <---------TOE1(3) ->At4g35610          --------->ARR11(3)                                                            - -->RAV1(1)           <---------ARR11(3) <---------AtMYB61                                         -- >RAP2.3(2)         <---------YAB1 <---------TOE2(3)                                               <- >DEAR3(1)     <------MYB46(1)     --------->DAG2      ------->TEIL                                <- >RRTF1(2)     ----------->GT1   --------->CCA1(2)   --------->YAB1                                <- -------->SPL7 <------MYB83     --------->ARR11(3)  <---------ATHB12  ---------->DOF2            ----   cggaagccatggaaggaaggtgaagatagtagaagataaggtattggtcttccaatgaacatttgaagaagagaaagaaattttgagagcaaaacaatcc  10261700                                                                                         <---------ARR11(3)                                                                                         --------->ARR11(3)                                                                                         <---------AHL20(1)                                                           --------->GLK1(2)             --------->AHL20(1)                                           <---------AHL20(1)                         --------->AHL20(2)                                           --------->AHL20(1)                 --------->ICU4 ------>GAMYB  --------->TOE2(3)           <---------ARR11(3)               --------->YAB1 ------->MYB46(3)                    --------->LBD16  ----------->GT1    <---------HSFC1(1) --------MYB52(2)                 XXXXXXXXXXXXXXXXXXXX>MIR865-3P         --------->HSFC1(1) --------MYB111(2)               <-----------GT1    ---------->DOF2      <---------HSFB2a(2) --------MYB55(2)      <----------DOF2     --------->ARR11(3)            --------->HSFB2a(2) ------->RAV1(1)     *TSS   ---------->ID1--------->AHL20(2)   <------------CBF--------->ATHB12   aacaaacctctctaaaacctctactcttttgtttttttccccaaatatatcaaaaaaagaaaatccattgtatttctagaatgatttataaaatattcag  10261800                                                   <---------ARR11(3)                                                   <-----------GT1                                                   --------->ARR11(3)                                                   <---------ARR14(2)                                                   --------->ARR14(2)                          ------                <---------AHL20(2)                --------->CCA1(1)                            ------                --------->AHL20(2)                --------->RVE1(1)                            <-----            <---------AHL20(2)                 <---------AHL20(2)                             -------            --------->AHL20(2)                --------->AHL20(2)                      --------->AtLEC2           --------->AHL20(2)               --------->TOE2(3)            <---------TOE2(3) --------->ICU4       <-------TEIL                       ------->TEIL          <---------AHL20(2)    ----------->GT1   aaaaacaaatacatttaattaaaaaacaaaatatagggaatatgaacattaaatatccccttgtattttttagttgatgttttagaccatgtaaaaatta  10261900                          <---------WOX13(1)                         <---------ANAC58                         <---------ANAC58                                          --------->AHL20(2)                        --------->ATHB12                                           <---------AHL20(2)                       <---------YAB1                                            <----------DOF2  <---------ZAT6   --------->ARR11(3)     ----------->GT1        --------->At4g35610      <---------ANAC58 --->AHL20(1) --------->AHL20(2)      <---------ICU4             <---------At4g35610      <---------ANAC58 --->AHL20(2) --------->AHL20(1)     <---------YAB1           ---------->DOF2<---------GLK1(2) ----AHL20(2) <---------AHL20(1)   --------->YAB1     --------->ANAC58      -------->HAHB4<---------ANAC46 -->AHL20(2) --------->YAB1       <---------YAB1      --------->ANAC58     <---------ATHB12   attagtgttgacgaaatataatatgttgattgttttatcatcagtagaaaaaatgcaagaaccaataagctccctaaatgattctttaatttgtgtgtaa  10262000                                                                                       ------>NtERF2                                                   <---------AHL20(2)               <---------At4g35610                                                   -------->HAHB4                   --------->At4g35610                                                   -------->ATHB1                   <xxxxxxxxxxxxxxxx                                                   <--------HAHB4                 <---------ZAT14                                                   --------->ATHB51               --------->ZAT14                                                   --------->YAB1             --------->ANAC58                                                  <---------YAB1              --------->ANAC46                                                  --------->ICU4              --------->ANAC58                                             ----------->GT1                 --------->LBD16                                       <---------YAB1--------->ICU4          --------->ZAT18                                   <---------AHL20(2)<---------YAB1     xxxxxxxxxxxxxxxx>smallRNA(i)                                 <---------AHL20(2)<---------ICU4     --------->ARR11(3)       --------->ZAT6            <---------YAB1   <---------ATHB51    <---------ARR11(3)       <-----   aactcttaaacactaactaaaaatacagaaggaatattattttgtttgggtaattattattagccattagatgatcatccgcgctacgctgcggtttttt  10262100                                                                                                  <--                                                                                      xxxxxxxxxxxxxxx                                                                                     <xxxxxxxxxxxxxxx                                                                                    <----------DOF2<x                                                                                    xxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                  xxxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 xxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                                 xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                                <---------ZAT18   <--                                                                                xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                               xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)                                 <---------YAB1                               xxxxxxxxxxxxxxxxxxxxxxx                               <---------ICU4                                 <xxxxxxxxxxxxxxxxxxxxxx                              --------->ICU4                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                           <---------AHL20(2)                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                           --------->AHL20(2)                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                <---------AHL20(2)                      --------->ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                --------->AHL20(2)<---------AHL20(2)    --------->ANAC46    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------ANAC58   --------->AHL20(2)            --------->AtLEC2    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------ANAC58   <---------AHL20(1)            --------->ANAC58    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)       <---------ANAC46   --------->AHL20(1)    --------->ANAC55(2)   <---------AHL20(2)     xxxxxxxx      ---------->ID1     --------->YAB1         <---------ANAC55(2)  --------->AHL20(1)     xxxxxxxxx     <-----------GT1 --------->AHL20(2)       <-----------GT1        <---------AHL20(1)    <---------ICU4 xxxxxxxsmallRNA(si3)<---------AHL20(2)       --------->AHL20(2)     --------->AHL20(2) --------->YAB1 ------GT1  ----------->GT1<---------YAB1     <---------AHL20(2)     <---------AHL20(2)xxxxxxxxxxxxxx   cgaattttttcgtattgtttaatttaaatataatttttatttatctaattacttattcatgcaatagaaaatttatttctaatgcccttttcatgatgcc  10262200  Previous    Next  AGI:  At2g24120.1    Description:  PDE319/SCA3 (SCABRA 3); DNA binding / DNA-directed RNA polymerase. Identical to DNA-directed RNA polymerase 3, chloroplast precursor (RPOT3) [Arabidopsis Thaliana] (GB:O24600); similar to DNA-directed RNA polymerase, mitochondrial (RPOMT) [Arabidopsis thaliana] (TAIR:AT1G68990.1); similar to DNA-directed RNA polymerase (RPOT2) [Arabidopsis thaliana] (TAIR:AT5G15700.1); similar to DNA-dependent RNA polymerase [Spinacia oleracea] (GB:CAC80139.1); similar to DNA-directed RNA polymerase 3, chloroplast precursor (T7 bacteriophage-type single subunit RNA polymerase 3) (NsRpoT-C) (GB:P69242); similar to unnamed protein product [Vitis vinifera] (GB: Range:  from: 10255991    to: 10261721    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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