Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                        <---------AHL20(2)                                                                      <---------AHL20(1)                                                                      --------->AHL20(1)                                                                      --------->AHL20(2)                                          <---------ANAC58         --------->YAB1                                          <---------ANAC58         --------->AHL20(2)                                    --------->AHL20(2)            <---------YAB1                                    --------->AHL20(1)          --------->YAB1                                    <---------AHL20(2)         --------------->AGL15                                   --------->AHL20(2)       <-----------GT1            ----------->GT1                             ----------->GT1            <---------AHL20(1) --------->ARR11(3)   -----                             <---------ANAC55(2)        --------->AHL20(1) <---------ARR11(3) ------- ------ARR14(2)            <---------ATHB12             --------->AHL20(2)--------->CCA1(1)   <------ ----->GLK1(2)   --------->ZAT14   <---------AHL20(2)  <---------AHL20(2) --------->RVE1(1)--------->AHL20(2)   atctagagcattagaatagtttagtcccaataagtaaaaaaattgctagtctcataaatattttacttataatataatatctcttaaaacggataaaatc  10181200                                                                                                  ===                                                                                                  ---                                                                                         ============                                                                                         ------>ZmHOX2a(2)                                                                                        <------ZmHOX2a(2)                                                                                        =============                                                                                       <---------ARR14(3)                                                                                       --------->ARR14(2)                                                                                       <---------ARR11(3)                                                                                       <-----------ARR10                  <---------At5g28300                                                  --------->ARR14(3)                  <-----------GT1                                                      --------->AGP1            <---------AHL20(1)     --------->ANAC46                         --------->ANAC46    -----            --------->AHL20(1)     --------->AtLEC2                         --------->ANAC55(2) <----         --------->YAB1            --------->ANAC58                     --------->YAB1 <---------AGP1        --------->AHL20(2)  <---------ICU4                             <---------YAB1  <---------ARR14(2) ---->TOE2(3)    <-----------GT1   --------->ANAC58                  ================================ -->ARR11(3)--------->AHL20(2)   <---------ANAC58                    <---------------AGL15     ------ ---ARR11(3)<---------AHL20(2)   <---------ANAC58                   <---------YAB1     --------->ARR11(3)   tcaatcccaaataataaatttaccccttcaacattacatgccaatttgaaaactaattaagagatttgtttttattataggtaactcaagatcttaatga  10181300                            <---------CCA1(1)                           <---------ARR11(3)                           --------->ARR14(2)                           <---------ARR14(2)                         --------->LBD16                        <---------ANAC46                       <---------LBD16                       <-------TEIL                     --------->ARR14(2)                     <---------ARR14(2)                    <---------HSFB2a(1)                    <------MYB83                    <------MYB46(1)                    --------->HSFB2a(1)                                            <------ZmHOX2a(2)         --------------->AGL15                                                    --------->AGP1        ----------------->AGL1  <---------AHL20(2)                                <---------AGP1        <-----------------AG<---------RVE1(1)                                     --------->ARR11(3)    ---------->DOF2 <---------HSFC1(2)                                            <---------ARR11(3)  <---------YAB1    --------->HSFC1(2)                                       --------->AHL20(2) =======================HOX2a_HOX2a                                          <---------AHL20(2) --->ZmHOX2a(2)    ----------->ARR10                                      ------>MYB83 =======================HOX2a_HOX2a                                       ------>MYB46(1) =======================HOX2a_HOX2a                                     --------->TOE2(3) ---->ARR11(3)     --------->MYB59                                      <---------MYB46(2) -----ARR11(3)   <------ZmHOX2a(1)                                      <---------MYB59 =========================MADS_MADS                                    --------->ANAC55(2) --->YAB1<---------------AGL15 <-----------GT1 --------->AtLEC2      <-----------GT1------>ZmHOX2a(2)   tcttcttatagcccttataggaaggtccggatatttcattccaattgacatacaaattttcttcagtcaatttacctaatttaagatctataacttcaga  10181400                                                                    --------------->AtSPL8                                                                  --------->ATHB51                                                                  <---------ICU4                                                              <-------TEIL                                                           <------MYB46(1)                                                           ----------->GT1 <----------DOF2                                                           <------MYB83   <---------DAG2                                                          --------------->AtSPL8                                                          <---------------AtSPL8                                 ---------->ID1   <-----------GT1 --------->ATHB12                             <---------ANAC58 --------->AHL20(2) <---------YAB1                             <---------ANAC58--------->AHL20(2)--------->ANAC55(2)               --------------->AGL15         <---------AHL20(2)<---------ANAC55(2) --------->ZAT6----               <---------------AGL15 --------->MYB52(1)--------->ATHB12 ------->TEIL        <--------   agttggattattttctactaaaacgggaattgtttgtcttaacagaaataaataacaagattggtacataattgcaccttttttagctctacttattttt  10181500                                                                                               *TSS                                                                     <-----------GT1         <-------   ------------>CBF                                              --------->AHL20(2)      --------->AHL20(2)   <---------ATHB12                                             ----------->TBP         --------->AHL20(2) --------->WOX13(1)                                     ---------->ID1           --------->ANAC46 ------->GT1                --------->DAG2    <-----------GT1 --------->HSFB2a(2)--------->ANAC58 -YAB1                     ---------->DOF2  <-----------GT1   <---------HSFB2a(2)--------->ANAC58   ggtaaatcaattcaaggcttagatttagataaagtttaagcatgtttttctctattttgttcttctataaattactctgttttaagccaaataaaaaaac  10181600                                                                          <---------YAB1                                                                      --------->TOE2(3)                                                                   <---------DOF5.7(2)                    --------->YAB1                           ---------->DOF2                 --------->ANAC46                   ------>ZmHOX2a(1)----------->GT1                 --------->ANAC58              --------->WOX13(1)  --------->MYB52(1)          ------ ---ID1          --------->ANAC58    <---------GLK1(1)   --------->ZAT6<---------MYB52(1)   ------>ZmHOX2a(1)   aaacacaaataccaaaaacaagtcataagaatcaaatggagttctctatcaatccttcaactctaaaggtaacgttattttaaacaatgtcatcctccta  10181700                                   --------->YAB1  --------->AHL20(2)    --------->ARR11(1)                               --------->KAN4(1)   <---------AHL20(2)   --------->ATHB12                  --------->AHL20(2)               <---------ICU4      <---------YAB1        ---------->DOF2       <---------KAN4(2)<---------AHL20(2)  --------->MYB46(3) >ZmHOX2a(1)      <---------AHL20(2)       ----------->GT1       ----------->RAV1(1)   aacatgttttgaaagtgagtttaatttgtgagaacattcaaaatatggtttaattttttcttctattcaacagatgattcggacaagtttttgtatatta  10181800                                                        ---------->DOF2                                             --------->STY1(2)                                             <---------STY1(2)                                          ------>ZmHOX2a(2)                                         <------ZmHOX2a(2)                                        --------->ARR14(2)                      <-------GAMYB                                        <---------ARR14(2)                     <---------ANAC58                                        <---------ARR11(3)                     <---------ANAC46                                        --------->ARR11(3)<----------ID1       <---------ANAC58                                    <---------LBD16---------->DOF2       --------->ARR14(2)          --------->ICU4         <---------ZAT2 --------->ANAC58         --------->ARR11(3)        --------->WOX13(1)       --------->ZAT2 --------->ANAC58         <---------ARR14(2)   gtagttttggcaattagtagtttttcgatgatggaagctcgggatctagctagcaaaggaaagacaaatattgaatatatggcgttgaattgtcgaaaac  10181900                                                                                                    <                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                -----                                                                                                -----                                                                                               <-----                             <------MYB83--------->ARR11(3)                     <---------ANAC58-----                             <------MYB46(1)                                   <---------ZAT2  ------                            <---------MYB46(3)                                 --------->ZAT2  <-----                --------->GLK1(2)        <---------ARR11(3)        --------->ANAC58            <-----               <---------GLK1(2)     ---------->DOF2               --------->ANAC58     ---------->DOF2          >>>>>>>>>WRKY18  <---------MYB52(1)                    ---------->DOF2<---------ANAC58-----         ----------->HVH21 <---------MYB55(1)        ---------->DOF2          ------>MYB46(1)  <-----  --------->LBD16      <---------At4g35610   --------->TOE1(1)---------->DOF2 ------>MYB83     ------   ataccgcagttttgacagaatttggagcagttggtgatggaaagacctcgaacacaaaagcgttcaaagaagccataaccaagcttgctccaaaggcagc  10182000      <---------ANAC58      <---------ANAC58      <---------ANAC46    <---------ZAT14    --------->ZAT14   --------->ALFIN1 ---------DEAR3(1) -----NtERF2 --->NtERF2 ------>MYB52(1) ------->HVH21 --->GAMYB                                                    ------>MYB46(1) ----->DEAR3(1)                                              --------->ANAC58 ---->ATERF1(1)                                              --------->ANAC58 ---->RAP2.3(1)                                <---------HSFC1(2) ----At4g35610                              <---------MYB52(1)------>MYB83 ---->MYB46(3)                             --------->LBD16   --------->ANAC46 --->At4g35610                           <---------LBD16    --------->MYB46(3) ----ZAT2                               --------->MYB52(1) --------->At4g35610             <-------TEIL ----ATERF1(1)                          -------->P  <-----------GT1                   --------->DAG2 ---->DEAR3(2)                         --------->MYB52(1)  <---------At4g35610  --------->AtLEC2  <-- -NtERF2                              ----------->HVH21--------->AtMYB61<----------DOF2--------->DAG2 --->ZAT2                    <------ZmHOX2a(1) --------->HSFC1(2)    <-----------GT1 ---------->DOF2   cgacggtggagtgcaactcattgttccaccaggaaaatggctaaccggaagtttcaacctcaccagccattttactttgttcatccaaaaaggtgcaact  10182100  Previous    Next  AGI:  At2g23900.1    Description:  glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein. similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G48950.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABD32865.1); contains InterPro domain Pectin lyase fold (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat (InterPro:IPR006626); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectin lyase fold/virulence factor (InterPro:IPR011050) Range:  from: 10181595    to: 10183706    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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