Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->ARR11(3)                                                       <---------ARR11(3)                                                       --------->ARR11(3)  <---------ATHB12                                                       <---------AHL20(1)--------->WOX13(1)                                                <----------DOF2        <------ZmHOX2a(2)         ----                         --------->MYB52(1)--------->ARR11(3)         --------->ARR11(3)       ------                --------->ANAC46           <---------ARR11(3)=================HOX2a_HOX2a      ------   <-----------GT1   --------->ZAT6       <---------CCA1(2)  ------>ZmHOX2a(1)      ----------->GT1 - --ATHB12       --------->YAB1     <-----------GT1--------->AHL20(2)  <---------ARR11(3)      -------   ctatataactacatatattcgtaacacaaacgaagaatttccatatatctcttttaatatatcctgttctaagatcaatgaatacattgtaactaaaaat  10162300                                                                       --------->ANAC58                                                                   --------->ANAC58                                   <---------ANAC46           --------->At4g35610                         --------->AHL20(2)                   ----------->RAV1(2) --------->YAB1                         --------->AHL20(1)               --------->ANAC58       <---------YAB1 ----->YAB1    --------->YAB1    <---------WRKY18(1)      ------>MYB83 --------->ANAC58 --->AHL20(1)  -------->HAHB4   --------->WRKY12          --------->ANAC58      <---------ARR11(3) --->AHL20(2) --------->ICU4    --------->WRKY38(1)       --------->ANAC46      --------->ARR11(3) -------->AHL20(2)       <---------AHL20(2)               ------>MYB46(1)---------->DOF2            - -->YAB1 ----------->GT1--------->AHL20(2)     --------->ARR11(3)  --------->ANAC58                <-   aataaactaaaatgtaataatacaaaaaaaattgttgacctgtatgaaatatcaagaaccaagcctctgaagcaagaaagatgatcatcagtctctaaac  10162400                                                                                       <-------------                                                                                       --------------                                                                                   <----------DOF2                                                                                <-----------GT1                                                                        =============================                                                                        ------>ZmHOX2a(2)                                                                       ==============================                                                                       <------ZmHOX2a(2)          ---                                                                      --------->ARR11(3)        <----                                     --------->TOE2(3)                <---------ARR11(3)       <-----            --------->YAB1   <---------MYB52(1)  --------->ARR11(3)   --------->ARR14(2)      <------ -------->YAB1          --------->YAB1           <---------GLK1(2)    <---------ARR14(2)  --------->YAB1 --------YAB1          <---------ATHB12          <---------ARR11(3)  <---------GLK1(1) <-------------   catcatcgtctccatcaaaatcccactcatcgttgtcttcgtcaatatcaagatttttctcggtgttatcgagatccctaattttctttctcttataagg  10162500                                                                           --------->ORA47(1)                                                                           --------->ANAC46                                                                          <---------MYB55(2)                                                                          --------->MYB46(3)                                                                        --------->MYB52(1)                                                                       --------->AtMYB61                                                                       --------->DEAR3(1)                                                                       <---------ALFIN1                                                                      --------->MYB46(3)                                                                  <------ZmHOX2a(2)                                                                  --------->CCA1(2)                                                                 <---------ARR14(2)                                                                 --------->ARR14(2)                                                                 <---------ARR11(3)                                                 --------->ARR14(2)   <---------MYB55(2)       <---------At4g35610                    <---------ANAC46   --------->AGP1       --------->At4g35610     --------->TOE2(3) <---------ARR14(2)--------->MYB46(3)  ----------->GT1--------->GLK1(2)            <---------ANAC58  --------->GLK1(1) ----AGL1       <---------ARR14(2)            --------->ANAC55(2)--------->ARR11(3) ->AGL15        <---------GLK1(2)      <------NtERF2     XXXXXXXXXXXXXXXXXXXX>MIR399D ==HOX2a_HOX2a  --------->ARR14(2)     --------->At4g35610--------->MYB52(1)    --------->AtLEC2 ==HOX2a_HOX2a  <---------ARR11(3)     <---------At4g35610---------->DOF2 --------->DEAR3(1)   <----- ------->DOF2  <---------HSFB2a(1)    <---------DEAR3(2) XXXXXXXXXXXXXXXXXXXX>MIR399A        <------- --ZmHOX2a(1)  --------->HSFB2a(1)   <---------DEAR3(1)  XXXXXXXXXXXXXXXXXXXX>MIR399F       ------>NtERF2 -----ID1      <---------HSFC1(2)    <---------RAP2.3(3) XXXXXXXXXXXXXXXXXXXX>MIR399E       --------- ---TOE2(3)    --------->HSFC1(2)    <---------ZAT18    --------->MYB46(3)--------->DREB2C(2)-------- --AGL15      ----------->ARR10<----------DOF2<---------ANAC58  <---------GLK1(1)  ---------->DOF2   aaaagagtaagatgagaagattctagcacaaaactttagtcggctcatgcgtattggaaccaaaggagatccaccaccggccatgtaaaggctctgccga  10162600                         <---------ARR11(3)                     ---------->DOF2                   --------->AtMYB61           --------->ARR14(2)           <---------ARR11(1)           <-----------ARR10           ------->TEIL  --------->ARR11(3)          <---------CCA1(2)            <---------ANAC46                                   --------->MYB52(1)       --------->HSFB2a(2)  --------->GLK1(2)   --------->GLK1(2)                      --------->ANAC58 ----RAP2.6(3)    --------->ANAC46     <---------ANAC58                                --------->ANAC58 ----------AGL1 --------->ANAC46       <---------ANAC58                          <---------WOX13(1) >At4g35610<---------ARR14(2)         <---------MYB46(3)                       --------->ATHB12 --------->AGL1 --------->REM1(1)   <---------MYB52(1) --------->ZAT6         <---------YAB1   aattggtctctcgaatctacaccaaaagataatccatcgttgcttgagagaagcttaagtctagcagagaaatgtgccatttgattgaaacgaaacgaag  10162700                           --------->ATHB51                                    ------->GAMYB                           *TSS  <------ZmHOX2a(1)                             --------->TOE2(3)                           --------->ATHB12                                   --------->MYB46(3)                           <---------ICU4                                   <---------DOF5.7(2)                          --------->AHL20(1)                               --------->WRKY38(1)                          --------->ICU4          ------------>CBF        <---------MYB52(1)                          --------->AHL20(2)     --------->ANAC46    --------->ARR14(2)                          <---------AHL20(2)     <-----------------AGL1   --------->DOF5.7(2)                          <---------YAB1         <-----------GT1     <---------ARR14(2)             -          ------>ZmHOX2a(2)-------->ATHB1<------------CBF        <---------At4g35610            -----          ==============================HOX2a_HOX2a              --------->At4g35610     --------->GLK1(1)   aagttagggtgatccaaagtcttggaaaattattaggaagagaaattgtttacacaatttggacttgagcagagccgttaaccacaaactgatttctata  10162800                                                                                               <-----                                                                                               ------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                              -------                                                                                              -------                                                                                              <------                                                                                            ---------                                                                                            <--------                                                                                            ------>NtERF2                                                                                           --------->DEAR3(1)                                                                                          --------->ATERF1(1)                                                                                         <---------ATERF1(1)                                                                                         --------->At4g35610                 --------->AHL20(2)                                                      <---------At4g35610     <---------ARR11(3)                                                                 --------->ANAC46     --------->ARR11(3)                              <---------ARR11(3)                 <---------DEAR3(1)    --------->RVE1(1)      --------->ARR14(2)        --------->AHL20(2)           <---------ARR14(2)    --------->CCA1(1)      <---------ARR14(2)      --------->ANAC58               --------->ARR14(2) -------->AHL20(2)<---------AHL20(2)               --------->ANAC58            --------->YAB1-------- ------>GT1     ----------->TBP       <---------CCA1(2)   ----------->GT1 --------->AHL20(2)<--------   gaaaaaatatcatgctctataaaatgacgaatatggcctcttatctttctaccaagaaattagaaaaaaaaaaaaaaaaaatcatattcgacgctgccga  10162900 ----RAP2.6(3) >NtERF2                                                                                --------->AHL20(2) ---ETT(1)                                                                              --------->AHL20(1) -->ATERF1(2)                                                  --------------->AGL15    <---------AHL20(1) ---ATERF1(2)                                               <-----------GT1             <---------AHL20(2) -->At1g77200                                            <---------ICU4             <---------AHL20(2) -->RAP2.6(2)                                         <---------ICU4                --------->AHL20(2) ---ETT(2)                                            <--------ATHB1               --------->AHL20(2) >At4g35610                                           --------->YAB1               <---------AHL20(2) -At4g35610                                           --------->ATHB51   <---------AHL20(2) ->DEAR3(2)                                          --------->ICU4    --------->AHL20(2)         --- -ATERF1(1)     <----------CDC5                      <---------ATHB51  <---------AHL20(2)         <--   caaatcacaaattttcgcgctaagctaagtatcgatttttagtttaaaatttggaataattgttactcgttatataaatttggaatttaataaaatgaaa  10163000                                                                       <----------DOF2                                                                 <---------YAB1                                                              --------->ICU4                            ---------->DOF2                <---------YAB1                     <------                       ------>ZmHOX2a(2)                   --------->AHL20(2)                --------                      <------ZmHOX2a(2)                    <---------AHL20(2)                <-------                     <---------ARR11(3)                   <---------AHL20(1)             <-----------               <---------YAB1--------->DAG2               --------->AHL20(1)             ------------ ------>AHL20(2)     --------->ARR11(3)                   --------->AHL20(2)   <---------AHL20(2)  <- -------AHL20(2)  <---------WOX13(1)            --------->AHL20(2)     <---------DAG2 <-----------GT1   ttaaaaatatgtatagtttgatagatcccaaaaagtattcaaatttacataaaaatagaatataattttgatactttttgttaaattttttctattaata  10163100                                              --------->YAB1     <---------ARR14(2)                                             <---------ATHB12    --------->ARR14(2) ---YAB1                                 <---------YAB1--------->AHL20(2) ->AHL20(2)                      --------->TOE2(3)     --------->YAB1 --AHL20(2)                   --------->CCA1(2)      --------->AHL20(2) ----AGL15    <---------AHL20(2)----------->GT1      --------->AHL20(1)        --------->AHL20(2) --->AGL15----------->GT1    <---------ARR14(2)     --------->YAB1--------->CCA1(2) --------AHL20(2)            --------->ARR14(2)   --------->AHL20(2)     ----------->GT1   taaaaatttgaattgtttaatagaaatttcagatatgttaattttcaatgataaaaataatatttcagatatgtgaagaaaaaaaattcagcatttcatt  10163200  Previous    Next  AGI:  At2g23840.1    Description:  HNH endonuclease domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO23496.1); contains InterPro domain HNH nuclease (InterPro:IPR003615); contains InterPro domain HNH endonuclease; (InterPro:IPR002711) Range:  from: 10160877    to: 10162727    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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