Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <xxxxxxxxxxxxxxxxxx                                                                                  --------->MYB46(3)                                                                                 ------>MYB83                                                                                 -------->P                                                                                 ------>MYB46(1)            <-----------GT1                                               --------->ARR14(2)       <---------ANAC58           --------->MYB59                         <---------ARR14(2)    <---------MYB52(1)  --------->TOE2(3)                                 --------->ARR11(3)  --------->ATHB12    <---------YAB1                                      <---------ARR11(1) <---------YAB1       <---------TOE2(3)                                   <---------ARR11(3) ----------GT1       <-----------GT1        <----------DOF2              <---------CCA1(2) ---GT1<---------ANAC58--------->ZAT6  <----------DOF2              <-----------GT1------->GAMYB   tttaccattgggtttcacaaaattaacattagtagttatgtcttttctttttaaaaacatattttagaataaaccatatctccaaccgaaaactccaaac  10150300                                                               --------->ARR11(3)                                                               <---------ARR11(3)                                                               <---------GLK1(2)               --------->LBD16                           <----------DOF2             <---------LBD16                            --------->TOE2(3)           <---------ARR14(2)                           --------->TOE1(3)           --------->ARR14(2)                     --------->YAB1    ------>NtERF2                                 --------->TOE1(3)   ----------->HVH21                              --------->TOE2(3)       <-----------GT1       -----   --------->ANAC46                            <---------CCA1(2)   <---------YAB1            <<<<<<<<   --------->DEAR3(1)        ---------->ID1 <----------DOF2  <---------TOE2(3)               <------- xxxxxsmallRNA(le3)     <----------DOF2<---------At4g35610   <---------TOE1(3)     <-------TEIL------   tctctccgacgcttatccgcatagttcttttgtcgattttgagcttcttttatcttaacctttaagattttgattttttccgatgttcatgttattaacc  10150400                        --------->AHL20(2)                        <---------AHL20(2)                      <---------AHL20(2)                   --------->AHL20(1)                   <---------AHL20(2)                   <---------AHL20(1)                  --------->YAB1                  --------->AHL20(2)        --------->LBD16                 <---------YAB1            <---------ANAC58               <---------ICU4              <---------ANAC46               --------->YAB1              <---------ANAC58               -------->ATHB1             <---------LBD16              --------->AHL20(2)       <---------ANAC58          <---------LBD16              <---------AHL20(2)       <---------ANAC58      --------->ZAT18              <---------ATHB51       <---------YAB1          <---------ZAT14           --------->AHL20(1)       <---------GLK1(2)        <---------ZAT18           <---------AHL20(2)      -------->HAHB4            --------->ZAT14 -->GAMYB  --------->AHL20(2)     --------->ICU4   --------->HSFC1(2)        ----------->GT1 <GT-1    <---------AHL20(2)      <---------YAB1   <---------HSFC1(2)   <------ZmHOX2a(1)       <---- ----GT1  --------->AHL20(2)    <---------ICU4    --------->ANAC58--------->ANAC58        <---------TOE2(3) --->MYB46(3) --------->ICU4    --------->YAB1    --------->ANAC58--------->ANAC58<------------CBF   acaagtctacaattaaattattatatttttttaaaaatgattcttgcgcgagaagctacttagtggactcggaaggagaagggaaattggtagaggtttt  10150500                        --------->YAB1                     --------->YAB1                    <---------AHL20(2)                    <---------YAB1                   <---------AHL20(2)                   --------->AHL20(2)                   --------->AHL20(1)                   <---------AHL20(1)                <---------AHL20(2)                --------->AHL20(2)                    <---------YAB1             --------->YAB1           --------->MYB46(3)            <---------YAB1       ----------->GT1 <---------At4g35610 -----AHL20(2)  --------->YAB1  <---------ZAT6   --------->At4g35610  <----------DOF2   aatttgcaaaacttataataatataatagtagtagtcgtaacaaatggtttagctgattattcaacatggaacttttcaaagaatgtttcagttttagtt  10150600                                   <-----------GT1                    ----------->GT1--------->MYB52(1)                    <---------ANAC58                    <---------ANAC58<---------TOE2(3)           <-----------GT1 --------->ANAC58 <-----------GT1                                  --------        <---------ICU4     --------->ANAC58<-----------GT1                                  ---------   ------------>CBF---------->ID1<---------MYB52(2)             ------>ZmHOX2a(2)       ------>ZmHOX2a(2)   gaacagacaatttttacccttgtcgtaacaagacaaataacgatttttccgactctcttcattcgatctctctccctctccctctctcgatcggaaaagt  10150700            <------ZmHOX2a(2)           --------->ARR11(3)           <---------ARR11(3)           <---------ARR14(2)           --------->ARR14(2)                              ------->TEIL      <---------DEAR3(1)                 --------->HSFB2a(2)                                     <---     <---------LBD16                     <---------HSFB2a(2)                                     <---  <---------GLK1(1)                      <---------HSFC1(1)--------->ARR11(3)               <-------- ------->TEIL------>ZmHOX2a(2)       <---------GLK1(2)     <---------ARR14(2)               <-------- ->DAG2--------->LBD16            ------->GAMYB           <---------CCA1(2)              <-----------GT1 ->DOF2------>NtERF2     ----------->GT1 --------->HSFC1(1)--------->ARR14(2)        <---------------   ttgaatctccggcgatcttctcaagatgagtaacaacgagcttctcgaaatcgagcctatgtatcttcaattcccttgtaagttttttttttgacttttt  10150800                                                      <---------YAB1                                        --------->ARR14(2)        <---------AHL20(2)                         <---------ANAC58             <---------TOE1(3) ------ANAC58            <---------ANAC58             <---------TOE2(3)          <---------O2 ------ANAC58   <---------ANAC58        <---------ARR14(2)        <---------AHL20(1) -DAG2<---------LBD16 <----------DOF2   <---------ARR11(3)        --------->AHL20(2) --DOF2         <---------ANAC58        --------->ARR11(3)       --------->AHL20(2)            <----- ---------ANAC81<---------AtLEC2        <---------GLK1(2)    <---------YAB1    <-----------GT1<------   cttgttttccctgattttgcatgtctttcttgtccataaccagattttgttgagttatggtttactattaaatttcgctattcacttggctgagttgatg  10150900                                                                     <---------TOE2(3)                                                                     <---------TOE1(3)                                  --------->ANAC55(2)     <---------ANAC58                                  <---------ANAC58        <---------ANAC58                                  <---------ANAC58        <---------O2----------->GT1           <----                              <----------DOF2             <---------bZIP60(2)                   -----                     <---------ANAC58                     <---------ANAC46    ---------->DOF2   <----                     <---------ANAC58        --------->ANAC58    <----------DOF2                ----- ----REM1(1)    <---------At4g35610          --------->ANAC58  ----------------->AGL1          ------ ---TOE2(3)     --------->At4g35610          --------->ANAC46  <---------ANAC46         --------->LBD16   tagttgaattgaagaagcagatgtcttgctctctttacttgacgaacaagacagacaataacgtggcctttaaggtaaaacaaagttttccgagtcatta  10151000          --------->ARR11(3)     <---------YAB1                                                                                --     --------->ICU4                                                                                <-   <---------ANAC58                                                                           <------   <---------ANAC58                                                                       --------->MYB59   <---------ANAC46     <---------TOE1(3)              <---------TOE2(3)                <---------MYB52(1) -----AHL20(1)          <---------TOE1(2)       <---------AHL20(2)                    <---------ANAC58 ---->AHL20(2)          <---------TOE2(3)       --------->AHL20(2)                    <---------ANAC46 -----AHL20(2)<---------ANAC58                  <---------AHL20(1)                    <---------ANAC58 ---->AHL20(1)<---------ANAC58            <----------DOF2       <----------ID1   --------->ATHB51 --- --->AHL20(2) <---------ANAC46      <---------GLK1(2)  <---------TOE1(3)     --------->MYB46(3)   <--   aattgtcgtgattatctcgtgtttctaaggtttctcgtgattctctttattttatttgaggttaagacgacaaatcggaacaactattgcgttaggccta  10151100                                                                                        ------->GAMYB    ------->TEIL                                                                       --------->MYB46(3) ------>HAHB4                                                         <----------DOF2 <---------At4g35610 --------ICU4                                              <---------ANAC58 <-----------GT1 ---MYB59<---------YAB1          --------->ARR11(3)        <---------ANAC58<-----------GT1 ------>ICU4                 ---------->DOF2<---------MYB52(1)<---------LBD16<-----------GT1 -------ATHB51  ---------->DOF2  <---------ARR11(3) <---------ATHB12  <---------DAG2  --------->At4g35610   attatggacttattcttccaaagtcgacttgtaaagttcttggtccgttctctaatcgttttcttggggaaactttttttcccccttcaactgccaaact  10151200  Previous    Next  AGI:  At2g23830.1    Description:  vesicle-associated membrane protein, putative / VAMP, putative. similar to VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1), protein binding [Arabidopsis thaliana] (TAIR:AT3G60600.1); similar to VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1) [Arabidopsis thaliana] (TAIR:AT3G60600.3); similar to VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1) [Arabidopsis thaliana] (TAIR:AT3G60600.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO24545.1); contains InterPro domain PapD-like (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) Range:  from: 10150726    to: 10151591    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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