Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <xxxxxxxxxxxxxxxxxxxx                                                                               ------->GAMYB                                                                              <xxxxxxxxxxxxxxxxxxxxxx                                                                             ------>MYB83                                                                             ------>MYB46(1)                                                                             --------->At4g35610                                                                           --------->AtMYB61                                                                           --------->MYB46(3)<-------                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                  --------->WOX13(1)                                      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                    <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)               <---------ARR14(2)                                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         XXXXXXXXXXXXXXXXXXXX>MIR842                                    <-----------GT1xxxxxxxxxxxxxx         <---------ICU4                                                 --------->ANAC46    <xxxxxxxx        --------->ICU4                                                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------YAB1                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      <---------ICU4   --------->AtLEC2                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   --------->ANAC46 <---------ATHB12                                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) ------>WOX13(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) --- ----->YAB1    --------->ARR14(2)                          ------>ZmHOX2a(1)--------->MYB52(1)    <-- ---->ATHB1   <---------CCA1(2)                          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) ------ ------ICU4<---------YAB1   <---------ALFIN1             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<xxxxxx -----ATHB12--------->YAB1------->TEIL        --------->AHL20(2)    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)   cattcacatcattatcatatccatcatgcaccatctcacatacttcatttaaaacatcatcctctattacatttacaccaactgaacttcgacgctccgg  10099600      <-----------GT1    <---------HSFB2a(1)    <---------HSFC1(2)                           --------->AtLEC2    --------->HSFB2a(1)                          --------->ANAC58    --------->HSFC1(2)                           --------->ANAC58 xxsmallRNA(i2)                                 ------->MYC3 xsmallRNA(si3)                                 <-------MYC3 --LBD16<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   ------->MYC2 xxxxxxx>smallRNA(l2)                           <-------MYC2 --------->GLK1(2)      ----------->GT1 xxxxxxxxxxxxxxxsmallRNA(fl3)              ------>ZmHOX2a(1) --------->ARR14(2)  --------->GLK1(2) ------>ZAT14                       <---------AHL20(2)      <---------GLK1(1)   <---------ARR14(2) -----TEIL       ------>ZmHOX2a(1)  --------->AHL20(2)      --------->GLK1(1)   <---------GLK1(2) --->LBD16------>ZmHOX2a(1)        --------->AHL20(2)      <------ZmHOX2a(1)<---------At4g35610 xxxxxxxxxxxxxsmallRNA(si3)------>ZmHOX2a(1) <---------ALFIN1<---------ARR14(2) --------->ARR14(2)   tacagaaatttcctctctcctctcaactcctataccatttaattcctccacatgcaaaacaggaatccgactctcttcatcagattctgttaaaaatatg  10099700                                                                                           <---------HSFB2a(1)                                                                                           --------->HSFB2a(1)                                                                                           <---------HSFC1(2)                                                                                      --------->YAB1                                                                                      --------->ANAC58                                                                                   --------->WOX13(1)                                                                               --------->REM1(1)                                                                               <xxxxxxxxxxxxxxxxxxxxx                    <---------AHL20(1)           ----------->GT1              <-------TEIL --------->HSFC1(2)                    <---------ARR11(3)         <---------GLK1(2)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <---------HSFC1(2)            --------->At4g35610       <----------DOF2                      --------->HSFC1(2)      ------>ZmHOX2a(1)               --------->TOE2(3)            ----------->HVH21  --------->ANAC58     --------->TOE2(3)            ------>ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxxxxxx   aagacatcctcatcatctacaatatatgtctctctcctaactttagacagattgtaactcagtttcaacttgacagaagcttcatcaatcgcaaccttct  10099800              --------->MYB52(1)             ------->GAMYB            <---------MYB52(2)            --------->MYB46(3)           <---------At4g35610                                                      ------>MYB83           --------->At4g35610                                                      --------->ARR14(2)    ------>ZmHOX2a(2)                                                              --------->WOX13(1)  <---------ARR11(3)                                                            <-----------GT1  --------->ARR11(3)                                                           <-----------GT1     -- xxsmallRNA(i2)                                                             <---------ICU4<---------ATHB12 xxsmallRNA(le3)             <-----------ARR10                       ----------->GT1------>MYB46(1)<x   tcatgatcttgtcaactaacatcgaatagctaatcttctccaaactactcgtcttaaacgaatatagcatatagtgaatttttaccaatccactgattca  10099900                                           ------>ZmHOX2a(2)                                           =========================HOX2a_HOX2a                                         --------->ARR11(3)                                         <---------ARR14(2)                                      <---             ------>ZmHOX2a(1)           ------->TEIL                                           -----             =====================================HOX2a_HOX2a                                   <----         --------->ARR14(2)    --------->TOE1(3)          *TSS                         <---------ATHB12         <---------ARR14(2)  ------->TEIL<---------ARR11(3)  --------->LBD16         --------->WOX13(1) ------->ZAT14  ---------->DOF2--------->TOE2(3)<<<<<<<<<TBF1------>ZmHOX2a(1)       <xxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     --------->ARR14(2)----------->RAV1(2)     ------------>CBF   cttcagaatagtatcctccaaagtcaaaatgtaccttagtatggatcttcttcttcatcgctcctgaaaatacaaccagttcaactccaatcaaacattt  10100000                                                  <---------ALFIN1                                                 <---------ZAT18                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                               ---------->ID1                <-----------GT1                                             --------->TGA1a                --------->DOF5.7(2)                                             <---------O2             ------>MYB83                                             --------->O2             ------>MYB46(1)            <-------MYC3                     ===============================================bZIP_DOF        --------->ANAC46            <---------ATHB12                <---------MYB59                --      <-----------GT1               ------------>CBF <xxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    --------->GLK1(1) ------YAB1 ------->MYC3 --------->TOE2(2)   <---------TGA1a      ------->TEIL             <---------GLK1(1) ---->AHL20(2)          --------->YAB1  xxxxxxxxxxxxxxxx>smallRNA(i)--------->TOE2(3)    --------->ATHB12 -----AHL20(2)  ------->TEIL      <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------MYB52(1)     -- xxxxxxxxsmallRNA(i2)  <---------YAB1 --------->WOX13(1)      --------->ANAC46   <----------DOF2  ---   taatagttataccacatgtactcttatcatacgttgaaatcaatctctcgtcgcactcgattctactgaacctaattcgttacctttcaattgatttcca  10100100                                                                   <----------DOF2                                                                   --------->TOE2(3)                                                                <---------ARR11(1)                                                                <---------ARR11(3)                                                                --------->ARR14(2)                                                                <---------ARR14(2)                                                               <---------CCA1(2)      --------->GLK1(1) ------->TOE2(3)             ----------->GT1                 <---------ALFIN1    <---------LBD16   -- ------->YAB1              <---------WOX13(1)               --------->LBD16   --------->ARR11(3) <--- -------->GT1    --------->TOE2(3)  --------->TOE2(3)     --------->ANAC46   <---------GLK1(1)   ----   atgttaatacatacctattcgttaaactaattggttaatctaaactttgcaaacacaaaccccccaaatctttaatatgaaatctcggaattcaaattca  10100200                                              <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                       <---------TOE2(3)                              --------->YAB1                                      --------->MYB52(1)                              <---------ICU4                                      <-----------GT1                                <---------ATHB12                               --------->TOE2(3)    --------->TOE2(3)               ------>MYB83                              --------->At4g35610 -------->P                        ------>MYB46(1)                            <---------ALFIN1--------->RAP2.6(3)           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ----->GAMYB               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          <----------DOF2         ---- ------At4g35610       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) ----->At4g35610   <----------DOF2  <---------MYB52(2)              <----------DOF2--------->WOX13(1)   actcacattcaaactacattcctttgctcatcacctcaaataacgtttcggcaacctctaatcgattactctttactttgcaaaccaatcatcaaactat  10100300                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                       <---------ZAT18                                                      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                 --------->YAB1                                                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                               <xxxxxxxxxxxxxxxxsmallRNA(i)                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          >>>>>>>>>RAP2.2------->TEIL                                          --------->TOE2(3)       ---------->DOF2                   --------->AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               ------>MYB83          <---------ZAT2          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                       ------>MYB46(1)          --------->ZAT2  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<-----------HVH21           <---------MYB59          <---------At4g35610    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     XXXXXXXXXXXXXXXXXXXX>MIR418 ----->YAB1        <---------AHL20(2)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)        <---------MYB52(2)   caaattgaatcgagctgggaattatatagaattcaaaatcccaatctaaaatcacaatgcaccaatgtcaaaggaaatatgagaagaaactgacctaatt  10100400                            <------NtERF2                          --------->ATERF1(2)                          <---------ATERF1(2)                          <---------DEAR3(1)                         --------->ATERF1(1)       ------>NtERF2                         <---------At4g35610      ----------->HVH21                         --------->At4g35610      --------->DEAR3(1)            xxxxxxxxxxxxxxxxxxxxx                         <---------LBD16         --------->ATERF1(1)            <xxxxxxxxxxxxxxxxsmallRNA(i)                        <---------ORA47(2)       --------->DEAR3(2)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                     ---------->DOF2               --------->GLK1(1)     --------->GLK1(1)  <xxxxxxxxxxxxxxxxsmallRNA(i)               <---------GLK1(1)   xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   --------->AtMYB61              <---------ARR14(2)   <------ZmHOX2a(1)<------NtERF2      <xxxxxxxxxxxxxxxxsmallRNA(s)              xxxxxxxxxxxxxxxx>smallRNA(i)      <---------ATERF1(1)  --------->WRKY38(1)              --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)--------->DEAR3(1)            --------->LBD16------>NtERF2        <------NtERF2        --------->WRKY12          <---------LBD16<------NtERF2          <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)        --------->ANAC46<---------RAP2.3(1)    xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)           ------>NtERF2   <----------DOF2      <---------ATERF1(1)   <---------RAP2.6(2)    <---------ETT(2)      --------->DEAR3(1)  <---------ANAC58     <---------DEAR3(1)   <---------MYB46(3)       --------->ETT(2)   --------->ANAC46  <---------ANAC46     <---------RAP2.3(3)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)>>>>>>>>>TBF1  <---------ANAC58     <---------DREB2C(2) <---------AtMYB61     ------->TEIL  <xxxxxxxxxxxxxxxxsmallRNA(i)   catggcttttacgccggatttcaagtcggcggcatgaggaaatcgatggtggccgacgaagaagatgaacgtcgaccaaagaagaagaacacgacgacga  10100500  Previous    Next  AGI:  At2g23720.1    Description:  transposable element gene. Mutator-like transposase family, has a 6.7e-76 P-value blast match to Q9SI25 /181-349 Pfam PF03108 MuDR family transposase (MuDr-element domain) Range:  from: 10095854    to: 10099958    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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