Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        <---------ANAC58      <---------ANAC58                                           ----------->RAV1(2)      <---------ANAC46                                      --------->YAB1     ---------->ID1                                        <---------KAN4(1) ------->HSFB2a(1)                                         --------->KAN4(1)             *TSS ------- -----MYB83                                        <---------ANAC46                   ---------->DOF2 -----MYB46(1)                                  --------->ARR14(2)            <---------DAG2--------- --------HSFB2a(1)                              <---------ARR14(2)            <----------DOF2 ------- -------AtMYB61     <<<<<<<<<TBF1   <---------MYB111(1)   <---------KAN4(2) ----------------->AGL1   aaggttttgcgttttctacttcttcttccttctctgtaactactaactcggttctgtgagaataatcgtctggccagtcccttttttgtaaagagaaagc  10008600                                ---------->ID1                                     ------->TEIL <----   <---------ARR11(3)     <---------YAB1                                 <-----------GT1        -----   --------->ARR11(3)   --------->AHL20(2)              ----------->GT1--------->ARR14(2)     -------  --------->RVE1(1)    --------->AHL20(2)            --------->CCA1(2) <---------ARR14(2)    <------- -->ANAC58             <---------ATHB51             --------->ARR11(3) <---------ARR11(3) <---------ICU4 ->DOF2 ----------->GT1<---------AHL20(2)           --------->AHL20(1) --------->ARR11(3)--------->AHL20(2) -->ANAC58             --------->ICU4    <---------AHL20(2)           <---------CCA1(2)  <---------AHL20(2)   caaaaaatccttgtaaaaaactgaaataatttttgttttttttttaattcgaaatatatggatattactagtatatctccatccgaacctattaattacc  10008700                                     <---------ALFIN1                                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                    --------->MYB46(3)                                    <---------MYB55(2)                              ------>MYB46(1)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                            --------->AtMYB61                           --------->MYB46(3)                         ------>MYB46(1)                         xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                         ------>MYB83<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                       <---------MYB59                                                --------->LBD16                      --------->MYB46(3) <----------DOF2          --------->AHL20(2)  <---------LBD16 -----HSFB2a(2)<---------ARR14(2)  --------->SPL7 <---------AHL20(2)      --------->TOE2(3)<---------GLK1(1) ---->HSFB2a(2)--------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->TOE1(3)--------->GLK1(1) -->MYB52(1)--------->MYB52(2)------>MYB83      <----------DOF2  --------->AHL20(2)  <---------LBD16 ----GT1   <-------TEIL--------->AtMYB61<---------DAG2       --------->AHL20(2) <---------ICU4-------   agaaaaaccatggttcgtttccgaaccaaaccatccgaaccacctttactctttatttgaaaatcaaataaaaaaaccctaatatttccagggatttccc  10008800                                                                                      <---------HSFB2a(1)                                                                               <---------At4g35610           <---------CCA1(1)                                                   --------->At4g35610           <---------RVE1(1)           <---------MYB52(1)              <------------MYB.PH3(1)          --------->ARR11(3)        <------------MYB.PH3(1)           <---------At5g28300          <---------ARR11(3)       <---------At5g28300            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)          <---------GLK1(2)  ------>ZmHOX2a(1)                  ------>ZmHOX2a(1)     --------->HSFB2a(1)         <---------RVE1(1)  --------->TOE2(3)                  --------->TOE2(3) ------->GAMYB     <- ---------->AGL1 <-----------GT1  <-----------GT1   <-----------GT1  <-----------GT1----------->RAV1(1)   aattcgaagagagattttttgacttcttctccttagtaaccgttttcgattttttgacttcttctccttagtaaccgtttcaactgcaacattccctatt  10008900                                                                                     <-------MYC3                                                                                     ------->MYC3                                                                                    <---------ANAC58                                                                                    <---------ANAC46                                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                   <-----------GT1         <------NtERF2        <----                                         --------------->AtSPL3           ------>NtERF2        ------               ------>ZmHOX2a(2)        xxxxxxxxxxxxxxxx>smallRNA(i)     --------->RAP2.6(2)  <------       <---------AHL20(2)              <-----------GT1 --------->ARR14(2)*TSSxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)      --------->AHL20(2)   <----------DOF2  <---------MYB52(1)        xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      <---------AHL20(2)  <---------ANAC58<---------ANAC58         --------->WRKY18(1)--------->ALFIN1 <---------AHL20(2)       <---------ANAC58<---------ANAC58        <-----------HVH21 <---------ANAC58 --------->AHL20(2)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    --------->WOX13(1) <---------O2<---- ---------DOF2 --------->HSFB2a(1)    <---------GLK1(1)<---------ARR14(2)--------->DEAR3(1)<------ZmHOX2a(1)   tctttaaatttaatcgatcgttcttcttgctttcaccagtatttccgttctatttccgattcgaaatcagtcatgccgcctaagacgcgtggaggaggtc  10009000                               ------>NtERF2                              --------->DEAR3(1)                             <------NtERF2                             --------->ATERF1(1)                            ------>NtERF2                            <---------RAP2.3(1)                            <---------ATERF1(1)                           --------->DEAR3(1)                           --------->RAP2.3(2)                           --------->RAP2.3(3)                          --------->ATERF1(1)                          <------NtERF2                          --------->RRTF1(1)                          --------->ERF1                          --------->RAP2.3(1)                          --------->RAP2.6(1)              <------NtERF2                         <---------ORA47(2)                <---------ZAT2                         <---------ERF1                    --------->ZAT2                         <---------RAP2.3(1)               <---------At4g35610                         <---------DEAR3(2)               ------>NtERF2                         <---------DEAR4(2)               <---------DEAR3(2)                         <---------RAP2.6(1)              <---------ATERF1(1)                         --------->LBD16                 --------->ATERF1(2)                         ------>NtERF2                   --------->RAP2.3(2)                         <---------ATERF1(1)             --------->RAP2.3(3)                         <---------RRTF1(1)              <---------ATERF1(2)                        <---------DEAR3(1)               <---------DEAR3(1)                        --------->ATERF1(2)             --------->DEAR4(2)                        <---------ATERF1(2)             --------->ERF1                   xxxxxxxxxxxx                        <---------RAP2.3(2)             --------->RAP2.3(1)           <------NtERF2                        --------->RAP2.3(2)             --------->ORA47(2)           --------->LBD16                        --------->RAP2.3(3)             --------->ATERF1(1)          ------>NtERF2                        <---------RAP2.3(3)             <------NtERF2               <---------ANAC46                        --------->DEAR3(1)              <---------LBD16             <---------RAP2.6(2)                       <---------LBD16                 ------>NtERF2                --------->ATERF1(2)                       --------->DEAR4(2)              <---------RAP2.3(1)          <---------ATERF1(2)                       --------->ATERF1(1)             <---------ATERF1(1)          <---------DEAR3(1)                       <------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(i)  --------->DAG2    --------->DEAR3(1)                       --------->ORA47(2)              <---------RRTF1(1)          --------->DEAR3(2)                       --------->RAP2.3(1)             <---------ORA47(2)          --------->ATERF1(1)                       --------->ERF1                  <---------DEAR4(2)          <---------LBD16  -                      <---------ATERF1(1)             <---------RAP2.3(2)          <------NtERF2    <         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        --------->DEAR3(1)          <---------ATERF1(1)       ---------->DOF2<---------RAP2.3(1)   ---------->DOF2--------->At4g35610 --------->HSFC1(2)   <   ---------->DOF2   --------->DEAR3(1) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------HSFB2a(1) <- -----WRKY12        <---------ABI4(2)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     --------->HSFB2a(1) <- --->WRKY18(1)      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->DEAR3(1)   --------->DAG2--------- -----HVH21     xxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <---------DEAR3(1)  <------ZmHOX2a(1)<xxxxxxxxx -----WRKY38(1)--------->CCA1(2)<------NtERF2     ---------->DOF2---------->DOF2 --------->ALFIN1xxxx   aagggaaaagaaaggagatagaagcgccggcgccagcgaagacagagaaagttaaggcgccggctgagaaagtgaaggagaaggtgccggcgaagaaagc  10009100             <------NtERF2            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                  <------NtERF2            --------->LBD16             <------NtERF2             <---------ATERF1(1)            ------>NtERF2              --------->LBD16            --------->LBD16            <---------ATERF1(1)        ------>NtERF2              ------>NtERF2           --------->RAP2.3(3)         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)           --------->RAP2.3(2)         <---------ATERF1(1)       --------->RAP2.3(2)           <---------ATERF1(2)        <---------ATERF1(2)        --------->RAP2.3(3)           --------->ATERF1(2)        --------->DEAR3(1)         <---------DEAR3(1)           <---------DEAR3(1)         --------->RAP2.3(2)        --------->ATERF1(2)           --------->DEAR3(1)         --------->ATERF1(2)        --------->DEAR3(1)          --------->ORA47(2)          <---------DEAR3(1)         <---------ATERF1(2)          --------->RRTF1(1)          --------->RAP2.3(3)       --------->ATERF1(1)          --------->ATERF1(1)        --------->DEAR3(2)         <------NtERF2          <---------LBD16            --------->RAP2.6(1)        --------->RRTF1(1)          --------->DEAR3(2)         <------NtERF2              --------->RAP2.3(1)          <------NtERF2              <---------LBD16            --------->DEAR4(2)          --------->ERF1             --------->ORA47(2)         --------->ORA47(2)          --------->RAP2.6(1)        --------->ATERF1(1)        --------->DEAR3(2)          --------->RAP2.3(1)        --------->RRTF1(1)         --------->ERF1          --------->DEAR4(2)         --------->ERF1             --------->RAP2.6(1)         ------>NtERF2               --------->DEAR4(2)         <---------LBD16               <------NtERF2         <---------ATERF1(1)         --------->RAP2.3(1)       <---------ORA47(2)            ------>NtERF2         <---------RAP2.3(1)        ------>NtERF2              <---------RAP2.3(1)          <--------         <---------RRTF1(1)         <---------ATERF1(1)        <---------DEAR4(2)           ---------         <---------ORA47(2)         <---------DEAR4(2)         ------>NtERF2               <------NtERF2         <---------DEAR4(2)         <---------ORA47(2)         <---------RRTF1(1)          --------->ATERF1(1)        <---------DEAR3(1)          <---------RRTF1(1)         <---------ATERF1(1)        ------>NtERF2        --------->DEAR3(1)          <---------RAP2.3(1)       <---------DEAR3(1)          <---------ATERF1(1)       --------->RAP2.3(1)         --------->DEAR3(1)         --------->DEAR3(1)       --------->ANAC46      <xxxxxxxxxxxxxxxxsmallRNA(i) <---------DEAR3(1)        <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <-----------RAV1(2)           --------->RAP2.3(1)       <xxxxxxxxxxxxxxxxsmallRNA(i) <---------DEAR3(1)   <-------TEIL                  <xxxxxxxxxxxxxxxxsmallRNA(i)--------->ATERF1(1) --------->HSFC1(2)  <-----------HVH21            <-----------RAV1(2)     xxxxxxxxxxxxxxxx>smallRNA(s)<-----------HVH21 xxxxxxxxxxxxxxxx>smallRNA(s) <-------TEIL            <---------HSFB2a(1)        <---------HSFC1(2) xxxxxxxxxxx>smallRNA(fl3)   <-----------HVH21     xxxxxxxxxxxxxxxx>smallRNA(s)  <---------HSFB2a(1) -------->HSFC1(2)          xxxxxxxxxxxxxxxx>smallRNA(s)<-----------HVH21       <---------TOE1(3) ---------HSFC1(2)         --------->HSFC1(2)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-----------RAV1(2) ---------HSFB2a(1)     xxxxxxxxxxxxxxxx>smallRNA(s)  <---------HSFC1(2) ---------->DOF2 ----------->HVH21 --------TOE1(2)     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<-------TEIL xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) --------TOE1(3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<-----------RAV1(2) xxxxxxxxxxxxxxxx>smallRNA(i) ->DOF2--------->ATERF1(1) <---------HSFC1(2)   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)<-------TEIL xxxxxxxsmallRNA(i)---------->DOF2--------->ATERF1(1) --------->HSFC1(2)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxxxxx>smallRNA(i)  <---------HSFB2a(1)---------->DOF2--------->RAP2.3(1)<---------TOE1(2)   <   gaaggttcaggcgccggcgaagaaagagaaggttcaggcgccggcgaagaaagagaaggttcaggcgccggcgaagaaagcgaaggttcaggcgacggcg  10009200                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                 --------->MYB52(1)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <------NtERF2            --------->ZAT18           ------>NtERF2                                                           ------->GAMYB          --------->bZIP60(2)            ------->GAMYB                     --------->At4g35610          <---------bZIP60(1)           --------->ANAC58                  <---------ATERF1(1)          --------->O2 <xxxxxxxxxxxxxxxxsmallRNA(i)                       <---------DEAR3(2)          --------->ANAC46              --------->MYB46(3) --------->MYB52(1)------>NtERF2          <---------DEAR3(1)<---------DEAR3(1)         --------->MYB46(3) <---------RAP2.3(1)          --------->ANAC58  --------->DEAR3(1)    xxxxxxxxxxxxxxxx>smallRNA(i)    --------->MYB46(3)          --------->ANAC58<---------ATERF1(1)   --------->At4g35610       ------>NtERF2          <---------ATERF1(2)  <---------DEAR3(1) ------>NtERF2          <---------DEAR3(1)        <---------ATERF1(1)--------->ATERF1(1) <---------RAP2.3(1)       <---------RAP2.3(2)       ----------->HVH21 ----------->HVH21     <---------ATERF1(1)      --------->RAP2.6(3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)  <---------DEAR3(1)       ------->GAMYB<---------LBD16<-     <xxxxxxxxxxxxxxxxsmallRNA(i)       ----------->HVH21  xxxxxxxxxxxxxxxx>smallRNA(i)         <xxxx -DEAR3(1)--------->ATERF1(2) <------NtERF2  --------->At4g35610      ----------->HVH21  --------->GLK1(1) >DEAR3(1)--------->bZIP60(1)------>NtERF2   <---------At4g35610 ------>NtERF2    ----------->HVH21<- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)    --------->ANAC58------->GAMYB --------->MYB46(3)xxxxxxxxxxxxx   aagacgactgcgacggcacaaacgactgcgacggcgatggcaacgacagcggctccaacgacaacggctccaacgacggctccaacgacggagagcccga  10009300                                         --------->At4g35610                                         <---------At4g35610                                        ------>NtERF2                                        --------->LBD16                                       <---------RAP2.6(2)                                      --------->RAP2.6(3)                                      <---------LBD16                                   <---------ARR14(2)                       <---------bZIP60(2)                                   --------->ARR14(2)                       <---------ANAC46                                   --------->KAN4(2)                       <---------AtMYB61        xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                   xxxxxxxxxxxxxxxxxxxx>smallRNA(se3)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)    <---------YAB1              --------->YAB1              <---------KAN4(2) --------ANAC58     --------->YAB1--------->KAN4(1)         --------->GLK1(2) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <----------TaMYB80        <---------ARR14(2) --------ANAC58    <---------YAB1 <---------KAN4(1)         --------->ARR14(2)     --------->At4g35610 xxxxxxxxxx>smallRNA(le3)  ----------->HVH21                ---------->TaMYB80--------->ALFIN1 ------   tgcttgatgattctacgttttatgatgctctgaagcatattccggctgaagaaactcaagagaatatgcaaactgatgaggtggaagatgaaaatgaaaa  10009400                                                                                               ------                                                                                            <--------                                                                                            <--------                                                                                            <--------                                                                    <---------ARR14(2)      ---------                                                      --------->GLK1(2)                     ---------                                                      <---------ARR14(2)          ===================                                                      --------->ARR14(2)          ---------->DOF2                     --------->GLK1(2) <---------ALFIN1  <---------YAB1<---------------------WRI1<---             ---------->DOF2 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ----------->HVH21       <--------       ----------->GT1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <------ZmHOX2a(1)        <-------- ---->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)  <------NtERF2 <---------At4g35610         <--------   agaagaaggaagtgaaaaagaagaatcagggagtagtagccaaaccttgggctccgattccgattcagaggagacggagacaaacaaagaagtcgcgtgt  10009500  Previous    Next  AGI:  At2g23470.1    Description:  similar to EMB1879 (EMBRYO DEFECTIVE 1879) [Arabidopsis thaliana] (TAIR:AT5G49820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14786.1); contains InterPro domain Protein of unknown function DUF647 (InterPro:IPR006968) Range:  from: 10006062    to: 10008589    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g23480.1    Description:  transposable element gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35794.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29710.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G04330.1); similar to hypothetical protein Tb927.4.5120 [Trypanosoma brucei TREU927] (GB:XP_826463.1); contains InterPro domain Protein of unknown function DUF287; (InterPro:IPR005048) Range:  from: 10008973    to: 10011768    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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