Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                            <-----------RAV1(1)                                                      <---------------AGL15                                                      --------------->AGL15                                                     ================================================                                                     ----------------->AGL2                                                     <-----------------AGL2                          <----------DOF2            <-----------------AGL3                       <---------ARR11(3)       --------->ARR14(2)                            <------         --------->ALFIN1------>ZmHOX2a(2)      <---------ARR11(3)                            <------ -------MYB46(3)       --------->ARR11(3)       --------->ARR11(3)               <---------DAG2 >ANAC55(2)  <------ZmHOX2a(1)<---------YAB1    <---------ARR14(2)      ---------->DOF2 <---------YAB1 -ANAC55(2)  ===================HOX2a_HOX2a    <---------CCA1(2) ----------->GT1 <----------DOF2   tggttaagaaggtgaggaaagttttgatctttatgaatgggttttcttcaaatcttctaaatgtggctagataaaaaagatgactttattgtgattcgtc  9956100        <----------DOF2      <---------------AGL15      =======================================================MADS_MADS      --------------->AGL15                                             <xxxxxxxxxxxxxxxxsmallRNA(i)  <---------GLK1(1)    <----------DOF2                               --------->ANAC58          <----- =====================MADS_MADS              <----------DOF2         --------->ANAC58  --------->At4g35610 -----HVH21            <---------DAG2  <-----------GT1       <---------AtLEC2  ------>ZmHOX2a(2) -----TGA1 ---------->DOF2 <---------YAB1    --------------->AGL15   --------->ANAC46  <---------At4g35610   atgggtttctctttaaagtcttaaactttatgaattggatttttcttctttttagtgtattgtgcatgtataagccattgatcgagattagctcatgctt  9956200                                                            --------->YAB1         <---------TOE1(2)                             <---------MYB46(3)        ------------>CBF    ------------>CBF   <---------AHL20(2)    <---------YAB1        --------->ICU4              ------>ZmHOX2a(1) -----DOF2      <------ZmHOX2a(1) <---------ANAC46    <------ZmHOX2a(1) ---------->ID1   tctatttatacatttgtaggaagaattttgtttgttctgtgatttgggaatttttaggacaatgagagttttttgtcctcaatcttgggtttgagtcaca  9956300                                                                --------->ARR11(3)                ----------------->AGL1                          <---------ARR11(3)                ----------------->AGL2                          --------->GLK1(2)             <------MYB46(1)                             --------->ANAC58             <------MYB83                                --------->ANAC58  <-----------TBP         <-----------RAV1(1)       <------------CBF      ----------->GT1 <----------DOF2           -- <---------ANAC46=========================================================================MADS_MADS<- <---------ANAC58--------------->AGL15     --------->GLK1(1)   --------->RVE1(1)                 ---- <---------ANAC58<---------------AGL15----------->GT1 <---------ATHB12  <-----------------AGL3 ------   ttcgcttgtaaatgttggtccattttgagaaatgtgggattggagaaatcaaacaaatcaagaaaaaatctgtgtctttttatgggtttagtttatgtaa  9956400                                                                                 <---------MYB46(3)                                                                                <----------DOF2                                                                               <---------ANAC58       <---------TOE1(3)                                                       <---------ANAC58       <---------TOE2(3)         <---------ANAC46                              <---------ANAC46      ---------->DOF2        <----------DOF2                              --------->ALFIN1 ------->ARR11(3)           <---------ANAC58    <---------ANAC46          <-----------RAV1(1) --------ARR11(3)         <-----------GT1       ----------->GT1         <---------ANAC46      <------ ----->ICU4       <---------MYB52(1)       <------ZmHOX2a(1)            <---------ANAC58     -------- ---->DOF2   <-----------GT1<---------ANAC58--------->ARR11(3)          <---------ANAC58----------->GT1   agatgttttaaagtttttctgtttttttttgctttctgtgtaataggatgttgtgaaaagtttcaagagtagttgtgtgtggcttgttggaggtaataaa  9956500                                  ----------->GT1    --------->ANAC58      --------->DAG2         <---------ATHB12        --------->ANAC58             <---------YAB1    <     ---------->DOF2         ------------>CBF      ---------->DOF2    <---------ZAT6           ------ ---AHL20(2)           >>>>>>>>>TBF1         <---------MYB52(1)     --------->MYB52(2)   --------->TOE2(3) ->ICU4             <---------------------WRI1<---------MYB46(3)  <--------P--------->ICU4   <-------   tggaccataaagcatggccttggaagaagaaatcaatggagaaaaccgttgttgaaagcaatggagaggttagtggaaatgatgttgataacattaatgt  9956600                   <---------ARR11(3)          <------MYB83         --------->ALFIN1        <--------P --------->ARR14(2)        --------->ALFIN1      <------MYB46(1)      <------MYB83 ------->TEIL                          <------MYB83     --------->MYB46(2)                            --------->ARR11(3)     --------->MYB111(1)                           <---------ARR11(3)     --------->MYB59                       <----------DOF2   <---------MYB52(1)------>ZmHOX2a(2) <---------CCA1(2) <------MYB46(1)                      <------ ---------TOE2(3)  --------->ARR11(3)<XXXXXXXXXXXXXXXXXXXXMIR825                         <-------TEIL --->ATHB12        <---------ARR14(2)--------->ANAC55(2)--------->MYB59       ------>ZmHOX2a(2) --TOE2(3)<------MYB46(1)<----------DOF2------->TEIL  <---------MYB52(1)     <---------At4g35610   ttgatgttaggttggggaatggatcttctttgctcatttatgtatcttttagagatgttaggtttagtatcagagtgtgatctgtttgacattcatgtgt  9956700                                                                           --------->ATHB12                                ----------->GT1                            <---------ICU4                  ----------->GT1                                         <---------YAB1                 <---------TOE2(3)                                        --------->ICU4            <           <---------YAB1       --------->ANAC58                      --------->ANAC58              <   <---------At4g35610          --------->ANAC58        <---------REM1(1) <---------ATHB12          - -----RAV1(1)    <---------TOE1(3)               <----------DOF2      --------->ANAC58              <   tgtttagctcattgtgtttgaggttaaacttgtcaagaaaaatccctcaagctttgtgatgtagtttgagacacccatgattgtgaaacttgtgtaatag  9956800       --------->YAB1     --------->ARR11(3)                        <---------ARR14(2)     <---------ARR11(3)                        --------->ARR14(2)  <---------GLK1(2)                          <---------RAP2.6(3) ---------YAB1                  <---------At4g35610                --------->ATHB12 ---------TOE2(3)  <------MYB46(1)       <-----------GT1         <----------DOF2 ---------->ARR10  <------MYB83 --------->At4g35610       --------->YAB1 ---------TOE1(3) --------->MYB59    <----------DOF2     <-------TEIL<---------WOX13(1)   ctaagattatcttgatgagttaggtttttgactcatctgcttttagccgtatttgctgattcatgagcttgattgttcatttgttcttggcattcgactg  9956900                      <---------ZAT2                      <---------At4g35610               --------->ANAC58               --------->ANAC58        ---------->DOF2          ----------->HVH21       <---------ANAC58         <---------ANAC46         ----------->GT1                      --------->At4g35610        <---------At4g35610       <---------ANAC58                     <---------At4g35610        --------->At4g35610       <---------ANAC55(2)                <---------RAP2.6(2)      <---------RAP2.6(2)         <---------ANAC46      --------->TOE1(3)    --------->ALFIN1  --------->At4g35610               --------->TOE2(3)                          --    <---------MYB46(3)--------->ZAT2----------->HVH21  --------->At4g35610            --------->YAB1   --------->ALFIN1  <---------AGP1--------->LBD16--------->YAB1  --------->ALFIN1 --------->YAB1  --   agaaggttgtggctgacaagatagagctggaacatcgcgtgaaaagtctaaatgataagcttaactctgtggaggctgagagcaataagcatgagactga  9957000  Previous    Next  AGI:  At2g23360.1    Description:  transport protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47900.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65607.1); contains InterPro domain Protein of unknown function DUF869, plant (InterPro:IPR008587) Range:  from: 9956536    to: 9959925    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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