Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                 ------                                                                                              <------                                                                                              -------                                                                                              <------                                                                                           ----------                                                                                           <---------                                                                                          -----------                                                                      <-----------GT1     -----------                                                                   ----------->GT1      ------>MYB46(1)                                                                 ---------->DOF2        ------>MYB83                                                              --------->ANAC58        <---------MYB59                      <---------ARR14(2)             <---------HSFB2a(2)     <----------DOF2  ------- ---->YAB1            --------->ARR14(2)         <---------GLK1(1)--------->DAG2      --------->AtMYB61 ----ATHB12           --------->GLK1(2)  --------->MYB46(3)   --------->ANAC58     --------->ANAC46   atcaaatgaaaaacagagacagagaatttgggtttctactctaacaactagaattctcgataacaagaaaagttacaaactttacaaaccaaaccagata  9949700          --------->YAB1         <---------ATHB12        ------>MYB46(1)                                   --------------->AtSPL8        ------>MYB83                                    -------->ATHB1     --------->ANAC55(2)                                --------->ATHB12     <---------ANAC55(2)                                <---------ICU4   <-----------GT1                                      --------->YAB1 --->CCA1(2)                                           <---------YAB1 ---ARR11(3)                                           --------->ICU4 -->ARR14(2)                                      --------->ANAC58 ---ARR14(2)                                      --------->YAB1 ----->AGL15                                      --------->ANAC55(1) ------AGL15                                  --------->ZAT6 ------>AGL3                                  <---------ALFIN1 ------>AGL2                       ----------->GT1--------->ANAC58 -->ARR11(3)          <---------ALFIN1<-----------GT1  <---------ATHB12  ---------->DOF2   --------->YAB1   tagtatcacctatcatcaaattcaacacatttttagatagttactctcacactcgtaatcattgtacataatcgaaaaagagattagaaacaaaaatact  9949800                                                                                <---------DEAR3(1)                                                                                <---------ANAC46                                                                                --------->ALFIN1                                                                               <---------LBD16                                                                               <------NtERF2                                                                               --------->ATERF1(1)                                                                              <---------RAP2.3(1)                                                                             <---------RRTF1(3)                                                                             <---------RAP2.3(2)                                                                             <---------RAP2.6(2)                                                                             <---------DEAR3(1)                                                                            --------->At4g35610                                                                      <------NtERF2                                                                     <---------ATERF1(1)                                                                    --------->DEAR3(1)                                          <---------LBD16           ----------->HVH21                                         -------->P                 <---------DEAR3(1)                                     <---------At4g35610           --------->RAP2.3(1)        -------                                     --------->At4g35610          <---------ATERF1(1)         =======                                    <-----------ARR10            --------->TOE1(2)      --------->ANAC58                            <---------ANAC58              --------->YAB1    <---------At4g35610                            <---------ANAC58   --------->At4g35610--------->LBD16--------->LBD16                            <---------ANAC46--------->LBD16      --------->TOE2(2)      --------->ANAC58                     --------->At5g28300 --------->MYB52(1)     --------->DEAR3(2)    ---------->DOF2               <-----------HVH21   <------ZmHOX2a(1)     <---------YAB1 <---------DEAR3(2)    *TSS            <---------At4g35610 <-----------RAV1(2)    --------->YAB1------>NtERF2<------NtERF2   cgaattcaaacttaagcagtcacagtaacttcgtgcaggagcttaccggagatgaattcatcataaaccggcgacggtagcggcggagcaaagcaaaaat  9949900                                                --------->ARR11(3)                                                <---------ARR11(3)                                               --------->RVE1(1)                                               --------->CCA1(1)                                               <---------RVE1(1)                                               <---------GLK1(1)                                        --------->ANAC55(2)                                        ==========================bZIP_DOF                                        <---------TGA1a                                        ================================================bZIP_DOF                                        <---------ANAC46                                        <---------ANAC55(2)                                        --------->TGA1a                                        --------->O2                                        <---------O2                                    --------->ARR11(3)                                   <------ZmHOX2a(1)           ----------->HVH21                             =====================================bZIP_DOF                             <---------TGA1a  <---------ARR11(3)          --------->YAB1                             --------->TGA1a  --------->ARR11(3)  <---------DEAR3(1)                             =====================bZIP_bZIP    <---------SPL7                             --------->O2<-------MYC3        <---------------AtSPL3     <-------TEIL            <---------O2------->MYC3       --------->GLK1(2) --------->DAG2 <---------YAB1       ============================bZIP_DOF <---------GLK1(2) ---------->DOF2 --------->ICU4       =================bZIP_DOF<---------CCA1(1) --------->RAP2.6(3) --->DOF2             ---------->DOF2<------ZmHOX2a(2) ---------->DOF2  <---------TOE2(3)      <----- ======================================bZIP_DOF--------->GLK1(1) --------->SPL7 <---------At4g35610   gcgatgattcatggaataggtctcaaaagtcacgagaggatcacgtgagatatcttgaaaagaatcggacggctaagaataaagcagactaattctctta  9950000                                           --------->TOE1(2)                                           <---------LBD16                    <---------ANAC46                                           --------->TOE2(2)                  <---------ANAC58           <---------MYB52(1)   <-----------GT1                   --------->ZAT6         ----------->GT1       <-----------GT1                    <-----------GT1     ----------->HVH21   <---------TOE2(3)----------->RAV1(2)  --------->GLK1(1)  --------->ZAT6        ---------->DOF2 <-----------GT1        <---------GLK1(1) ----CCA1(2)    --------->AHL20(2) <---------DAG2   <---------TOE2(3)         <---------ANAC58     --   tctatctctaaccgttaaataaaaactaaagttttaaccttttaacctgggactagggttttcagatttcactactcttgtcgtgtaagacttgagcaac  9950100                                 *TSS                                ------>NtERF2                                <---------At4g35610                                --------->ZAT14                             ----------->RAV1(2)                             --------->At4g35610                             <---------At4g35610------>NtERF2                     --------->YAB1          <---------ZAT2                  --------->WOX13(1)         --------->At4g35610                             <------NtERF2           <---------DAG2--------->ARR14(2)  --------->ZAT2                                <---------DEAR3(1)           <----------DOF2  --------->ANAC46 <---------At4g35610                     --------->YAB1     --------->TOE2(3)   <---------ARR14(2) --------->ALFIN1                        <---------YAB1 <---------AHL20(2) <---------ATHB12      --------->DEAR3(1)    ------>NtERF2     --------->WOX13(1) --------->TBP  ------------>CBF--------->At4g35610--------->ANAC46          ------>ZmHOX2a(1)   tatataatctcaacttttctcaatcactatccgctgcggtctcgccgtgctgcccacaacaatctccgacttcgtcttcctcatctatcatcgtcgtcgt  9950200                             ------------------------>ANAC81                        <---------YAB1                       --------->TOE2(3)                    <---------ANAC58                      <--------HAHB4                        <---------ANAC58       <-----------GT1--------->YAB1                     <----------DOF2 <---------DAG2      <---------YAB1                --------->TOE1(3)                            <---- --------->TOE1(3)<---------AHL20(2)               --------->TOE2(3)       --------->ANAC46<--------- --------->TOE2(3)--------->AHL20(2)          ---------->DOF2 <---------MYB52(1)  --------->AHL20(2)   caaccttatttatctcttaatttatcattaaaaccaaaaaaccaaaaaaaaagccttagctttcgtttcttcaatcccagcaaaaaaaatggctcaggtt  9950300                                                                                            ---------                                                                                           <------NtERF2                                                                                           --------->ATERF1(1)                                                                                           <-------GAMYB                                                                                          <---------DEAR3(2)                                                                                          <---------MYB46(3)                                                                                         <---------ANAC46                                                                                         <---------DEAR3(1)                                                                                         --------->ALFIN1                                                                                         <---------DREB2C(2)                                                                                         <---------AtMYB61                                                                                        <---------ABI4(1)                                                                                        --------->ATERF1(1)                                                                                       ------>NtERF2                                                                                       <---------ATERF1(1)                                                                                       <---------ORA47(2)                                                                                       <---------DEAR4(2)                                                                                       <---------ERF1                                                                                       <---------RRTF1(1)                                                                                       <---------RAP2.3(1)                                                                                       <---------RAP2.6(1)                                                                                      <---------RRTF1(3)                                                                                      <---------RAP2.3(3)                                                                                      <---------RRTF1(2)                                                                                      <---------ATERF1(2)                                                                                      <---------RAP2.3(2)                                                                                      <---------DEAR3(1)                                                                                      --------->DEAR3(1)                                                                                      --------->ATERF1(2)                                                                                     <---------At4g35610                                                                                     --------->ATERF1(1)                                                                                     --------->At4g35610                                                                                    <---------ATERF1(1)                                                                                    <---------ORA47(2)                                                                                    <---------RRTF1(1)                                                                                    <---------ERF1                                                                                    <---------DEAR3(2)                                                                                    <---------RAP2.3(1)                                                                                   <---------DEAR4(1)                                                       <---------DEAR3(1)          <---------At1g77200                                                      --------->ATERF1(1)          <---------RAP2.3(3)                                                    ----------->HVH21              <---------DREB2C(2)                                                   <------NtERF2                   <---------DEAR3(1)                                                  <---------ATERF1(1)            <-----------HVH21                                                <---------At4g35610              <---------SPL7                                   <---------MYB46(3)<---------ATERF1(1)         ------>NtERF2                                 <-------GAMYB  --------->ZAT2                   <---------ATERF1(1)                                <-----------RAV1(1)--------->ATERF1(1)     --------->ARR14(2)                             ------>ZmHOX2a(1)  <---------ABI4(1)      --------->LBD16<---------RAP2.6(2)                           ----------->RAV1(2)  --------->At4g35610   --------->LBD16<---------ABI4(1)                           =================RAV <---------ZAT2        <---------LBD16<------NtERF2                          ------>ZmHOX2a(1) <---------DEAR3(1)    -------->P    <---------DEAR3(1)                         <---------ALFIN1   <---------bZIP60(2)<---------At4g35610--------->ATERF1(1)                       ------>ZmHOX2a(1)    <---------O2       --------->At4g35610<------NtERF2     ------>ZmHOX2a(1)<---------ALFIN1 <---------DOF5.7(2)  <---------At4g35610 --------->DEAR3(1) ---TEIL            ------>ZmHOX2a(1)--------->DOF5.7(2)------>NtERF2----------->RAV1(2)<------NtERF2 --RAV1(2)   <---------GLK1(2)<---------At4g35610<---------DEAR3(1)  <---------LBD16------>NtERF2   caagctccttcttcacattctcctcctcctcctgctgttgttaacgacggggctgcgacggcttctgctacccctggaatcggcgtcggcggcggtggag  9950400                                              --------->GLK1(1)                                              <---------GLK1(1)                                         ------>ZmHOX2a(2)                                        <------ZmHOX2a(2)                                        --------->CCA1(2)                                       <---------ARR14(3)                                       <---------ARR14(2)                                       --------->ARR14(3)                                       <---------ARR11(3)                                       --------->ARR14(2)                                       --------->AGP1                                       <---------AGP1                <---------DAG2                                       --------->ARR11(3)            <----------DOF2                  <----------DOF2     <---------GLK1(1)            <---------At4g35610                <----------DOF2       --------->GLK1(1)            --------->At4g35610          >>>>>              --------->ABI4(2)      ----------->ARR10       <-----------ARR10                 <-----              <---------ZAT18       <------NtERF2           <---------GLK1(2)                <-------          --------->ANAC46        --------->ETT(1)          --------->ARR14(2)              ---------       ----------->HVH21          <---------ANAC46          <---------ARR14(2)       --------->DEAR3(1)  <-----------HVH21             <-----------HVH21      <-----------GT1             <---------At5g28300 >ALFIN1--------->MYB52(1)     <-----------RAV1(1)   <-----------HVH21   <---------YAB1   --------->ALFIN1   acggagtcactcacggtgctctttgttctctctatgtcggagatctggatttcaatgtcaccgattctcagctttatgactatttcaccgaggtgtgtca  9950500   --------->ARR14(2)                                                                --------------->AtSPL8   <---------ARR14(2)    <---------At4g35610                                        <---------ANAC46   ------->TEIL    <---------ANAC46                                                <<<<<<<<<<MYB80  <---------CCA1(2)<---------ANAC58                                               <---------MYB46(3) >>GRF7            <---------ANAC58                                        --------->DEAR3(1)       < ------RAV1(2)    ---------->ID1                   <---------TOE1(3)      --------->DEAR3(2)     <--- ----HVH21<---------ANAC58  <---------At4g35610    <---------TOE2(3)    <---------ALFIN1 --------->ZAT18 -->HVH21 <---------ANAC58  --------->At4g35610    <---------YAB1     ----------->RAV1(1)<---------ZAT18   ggttgtatctgttcgtgtttgtcgtgatgctgctaccaatacttctcttggttatggttatgtcaactacagcaacaccgacgatggtttgtgccctaaa  9950600  Previous    Next  AGI:  At2g23348.1    Description:  unknown protein Range:  from: 9948269    to: 9949894    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g23350.1    Description:  PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor. similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76464.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN65906.1); contains InterPro domain Polyadenylate binding protein, human types 1, 2, 3, 4; (InterPro:IPR006515); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Polyadenylate-bind Range:  from: 9950133    to: 9953349    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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