Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                     <--------P                                                           --------->ANAC58                         < --------ANAC58                             --------->ANAC58 --------->ARR14(2)      --------->ANAC46 --------ANAC58       --------->ICU4        --------->ANAC58 <---------ARR14(2)      --------->ANAC58 ->ZAT6          ----------->GT1            ------->GAMYB  --------->ANAC58          --------->ANAC58   cgcgtccagacttgtagttttgtaattcttcccatagtttaatcaaacgcccatagtatgcaagaactggttgtccatcttgagtacaagcagcaatttc  9939000                                                   <---------ARR11(3)                                                   <---------ARR14(2)                                                   --------->ARR14(2)                                                   <---------GLK1(2)                                 ------->GAMYB     --------->ARR11(3)                                --------->MYB46(3) --------->ARR14(3)             <---------SPL7    ------>MYB46(1)     <-----------ARR10            <---------ANAC58   ------>MYB83 ------>NtERF2 ----------->RAV1(1)            <---------ANAC58   -------->P  --------->DEAR3(1)                           ------>MYB83    <-----------GT1           --------->MYB52(1) ----------->ARR10                      ------>MYB46(1) ----------DOF2     <---------ALFIN1---------->DOF2<---------ARR14(3)                  --------->MYB52(1)   atcttttaacagtgtcttacgaacaccgttcccaaccgaaaaacgacgacgaagattttcccacagttgtgatgcctctgaaacaaaaccaactgtagaa  9939100                                                                                    <---------DEAR3(2)                                                                                    <---------RAP2.6(3)                                                                                  <-----------------AGL2                                                                                  ----------------->AGL1                                                                                  <-----------------AG                                                                                  <-----------------AGL1                                                                                 --------->MYB52(1)                                     <---------YAB1                           --------->ZAT2                                     <---------ATHB12                         --------->At4g35610                                     <<<<<<<<<ARR1                            <---------At4g35610                                     <<<<<<<<<ARR2                            <---------ZAT2                                  --------->MYB46(3)                        <-----------RAV1(2)                              --------->MYB46(3)                           <------ZmHOX2a(2)                          ------>ZmHOX2a(2)                    --------->YAB1 ----------->RAV1(2)  <-                          <-------TEIL--------->YAB1           --------->TOE2(3) ------>NtERF2     --                         <------ZmHOX2a(2)             =========================HOX2a_HOX2a       <--                        <---------ARR14(2)             <------ZmHOX2a(2)  <---------ARR14(2)     <---                        --------->ARR14(2)            --------->ARR14(2)  --------->ARR14(2)     ----                        <-----------ARR10           <---------ANAC58     ============================                    <---------LBD16--------->YAB1   <---------ANAC58     ============================          ------>ZmHOX2a(2)  --------->AtLEC2 <---------AHL20(2)      <---------LBD16    <---------LBD16  --------->ATHB12 --------->ALFIN1--------->WOX13(1) <---------ARR14(2) <------ZmHOX2a(1)       ----   cgaattgttggatcgatagatgtgcggatccatccaacaatcatagaatttatggcgatccacaaacttaattcaggatcagctgccggtttggggatgg  9939200       ---------->DOF2 ------TEIL ---->ZmHOX2a(2) ----ZmHOX2a(2)                                                                                   --- ------ARR14(2)                                                                                 <---- ----->ARR14(2)                                               <---------At4g35610       ------->GAMYB ====HOX2a_HOX2a                                            --------->YAB1           ----------->RAV1(1) =====HOX2a_HOX2a                             <---------ARR11(3)                     --------->MYB52(1) --->TEIL                                     --------->ARR11(3)            <----------DOF2    <-----   atccatcgatgaagccaagtttttgtttggctctaagaaagttttgtagttcttcagaccattcagcatagttgttttcttttaaaacaacagaagagat  9939300                               --------->CCA1(2)                               --------->GLK1(1)                              --------->ARR11(3)   <-----------HVH21                              --------->ARR11(1)  --------->ALFIN1                              <---------ARR11(3)<---------ANAC58                   <---------ARR14(2)                              <---------ARR14(2)<---------ANAC46             --------->ANAC46                    <---------ANAC58            <---------bZIP60(2)  --------->ANAC46          <--------P<---------ANAC58     --------->ALFIN1      <---------ANAC55(2) <---------GLK1(2)       --------->LBD16        --------->ARR14(2)<---------ANAC58<---------SPL7    <---------At4g35610      --------->LBD16       ----------->ARR10 <------ZmHOX2a(1)--------->ANAC55(2)--------->At4g35610     <---------LBD16<---------ANAC46     <---------ANAC46     --------------->AtSPL8 ------->DOF2   --------->At4g35610    <---------MYB46(3)     --------------->AtSPL3 --------->At4g35610 --ZmHOX2a(2)   <---------At4g35610   <---------AtMYB61<---------At4g35610   --------->ANAC58 ----ARR11(3)  ----------->HVH21      --------->ALFIN1 --------->At4g35610   --------->ANAC58      *TSS   caaagcacccgggttgtctgatgcgttgataagatatgcagtggtggaggacgtgttagatgaagacgtactcgttaccaaggcagatgctgaagacatc  9939400                                                                        <---------AHL20(2)                                                                  ----------->GT1                                                                 --------->ALFIN1                                                               <---------ANAC46                                                              <---------DEAR3(1)                                                             <---------At4g35610                                                             <---------ZAT14                                                             --------->At4g35610        <---------ARR11(3)                                                             <------NtERF2              --------->ARR11(3)                                                             <---------ABI4(1)      ---------->DOF2                                                           <---------RAP2.3(3)--------->MYB59                                                           <---------DEAR3(1) <---------TOE2(3)                    <------ZmHOX2a(1)              --------->MYB52(1)   --------->AHL20(2)            --------->YAB1             --------->YAB1<---------MYB52(2)--------->AHL20(2)  <---------   gtatagtagaggtatagtaataggagaaaatagaagtagaataagaaacagaacaacgaaggctgcggtggaaaaaaatttaggtcaaaagagcttttgc  9939500                      --------->DAG2                     ---------->DOF2                 ----------->GT1                                                            ---------              <---------AHL20(2)                                                            <--------             <---------AHL20(2)                                                             ------->TEIL             <---------AHL20(1)                                                             <--------             --------->AHL20(1)                                                            <---------ARR14(1)             --------->AHL20(2)                                          <---------------AGL15  -----            --------->YAB1                                              <---------ANAC46   <---------CCA1(2) -DOF2  --------->AHL20(2)      --------->KAN4(2)       <---------AHL20(2)         --------->CCA1(2)   tctgatacaatgaaatataatgtaaaagtgtgtttattccaatagtcgaagagagtatttatacaaggagagttgctcatagaagataagaacgtatcta  9939600                                                                                            ---------                                                                                   --------->DEAR3(1)                                                                                   ------->GAMYB                                                                                  --------->DEAR3(2)                       <-----------ARR10                                      <------ZmHOX2a(2)       <------ZmHOX2a(1)          --------->ZAT6                              =================HOX2a_HOX2a   --------->TOE2(2)   <---------ARR11(1)                                    --------->ARR11(3)    --   --------->TOE1(2)   <---------ARR14(2)                            <---------AHL20(2) ------>ZmHOX2a(1) >ARR14(2)             --------->ARR14(2)                    ----------->RAV1(2)  --------->MYB46(3)< -ARR14(2)             ------->TEIL   <-----------GT1        --------->At4g35610<-----------GT1    <- -ARR11(1)            <---------ARR14(1)                   <---------ALFIN1  <---------ARR11(3)  ---- ------>GT1           <---------CCA1(2)-------->P<---------MYB52(1)  --------->AHL20(2)--------->TOE2(3)   gtaaatctaggatttacatatatcgtatctactctaatactaacctctccagttatctcgagcacctgaaattaaacaagatcaaccgtccttaacaact  9939700                                                         ------>NtERF2                                                        --------->LBD16                                                       <---------RAP2.6(2)                    -------                                                      <---------LBD16                         -------                                                    --------->ARR14(2)                        <------                     ----------->GT1                <---------ARR14(2)                        ------- >MYB46(3)        <--------ATHB1                   <---------GLK1(1)                         ------->TEIL ------->ICU4     --------->YAB1                   <---------CCA1(2)                --------->AHL20(2) ---------ICU4   <---------YAB1              --------->GLK1(1)              ------>NtERF2 --------->ANAC46 --------YAB1    <---------ATHB51         --------->DOF5.7(2)           --------->ARR14(2)--------->ANAC58 ----->YAB1    --------->YAB1           <---------ANAC55(2) <------NtERF2--------->SPL7   --------->ANAC58   cataattctcacccgaacaataatagttaaacaatgtttgaaacgtgaactccatatccggcctcgaatagctggttcggcccaaaataaacaagcacct  9939800     <------ZmHOX2a(1)  <---------HSFB2a(2)                     --------->SPL7  <-----------RAV1(2)                 <---------ICU4                 <---------MYB46(3)  <---------LBD16                   --------->GLK1(2)           <---------LBD16 -->ZAT2                         --------->ANAC46      <---------AHL20(2) -->At4g35610                 --------->ARR14(2)       --------->AHL20(2)--------->ATHB12 ---At4g35610            ----------->RAV1(1)          <---------WOX13(1)<---------YAB1 ---------->DOF2 ---->RAV1(2)<---------GLK1(2)<---------ARR14(2)   <---------YAB1 --------->LBD16 <----------DOF2   gagtccaggagtccagactctgcatcccaacatatacgaatcagtacgaagttttgattaattgtgtccggatgttgattagctctttataaagactaca  9939900  Previous    Next  AGI:  At2g23330.1    Description:  transposable element gene. copia-like retrotransposon family, has a 3.9e-195 P-value blast match to GB:AAA57005 Hopscotch polyprotein (Ty1_Copia-element) (Zea mays) Range:  from: 9934906    to: 9939399    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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