Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                --------->ARR11(3)                              <-----------RAV1(1)             <---------ARR11(3)                            <-------GAMYB                <---------ANAC46            <-----------HVH21 <---------MYB46(3)         <---------HSFB2a(2)  <---------YAB1--------->ANAC46       <-----------RAV1(1)--------->LBD16---------->DOF2          <-- --------ARR14(2)  --------->LBD16 <---------ANAC46      --------->HSFB2a(2)  ---------->DOF2    ---- ------->ARR14(2) --------->ANAC46<---------At4g35610   <---------LBD16--------->At5g28300      ----- -NtERF2   <----------DOF2 <-----------RAV1(1)  <---------MYB46(3)    ----------->GT1          ------   gtttctgatttttctttcacgcgcgattgctgttgttgctgatgttgttgttgttgattccggagatgttgacggtaaagagaagcgctggatgcgaaac  9833800                                                                                               <-----                                                                                               ------                                                                                             <-------                                                                                            <--------                                                                                            ---------                                                                                            <------NtERF2                                                                                            ---------                                                                                            <--------                                                                                            ---------                                                                                           <---------RAP2.6(1)                                                                                           ------>NtERF2                                                                                           <---------ATERF1(1)                                                                                           <---------ORA47(2)                                                                                           <---------ERF1                                                                                           <---------RRTF1(1)                                                                                           <---------RAP2.3(1)                                                                                          <---------ANAC46                                                                                          <---------RAP2.3(2)                                               <---------ATERF1(1)                        <---------RRTF1(3)                                             <------NtERF2                                <---------RRTF1(2)                                            --------->LBD16                               <---------DEAR3(1)                                           --------->DEAR3(1)                             <---------RAP2.6(2)           <---------HSFB2a(2)            <---------LBD16                                 <---------ATERF1(2)           --------->HSFB2a(2)      ------>ZmHOX2a(1)                                     <---------RAP2.3(3)           ------>ZmHOX2a(1)   --------->KAN4(2)                                          --------->ATERF1(2)          <---------LBD16      <---------GLK1(2)                                          <---------DREB2C(2)         ----------->RAV1(2)   <---------ARR14(2)                                        --------->ATERF1(1) -------LBD16                 --------->HSFC1(2)                                         <------NtERF2 ----->MYB52(1)               <---------HSFC1(2)--------->ATERF1(1)                    <---------DEAR3(1) ------>HVH21                 <---------HSFB2a(1)             <------ZmHOX2a(1)     <---------MYB46(3) --->DEAR3(2)                 --------->HSFB2a(1)<----------ID1    <------ZmHOX2a(1)<-----------RAV1(1)   gacggagattgtcctggagcgaagagagaagaagattcctcttcgccggagacgacgaagagaaggagaggagagagaagagattgttgttggcggcgga  9833900    <---------ANAC46 -NtERF2                                                                                          --- --->ATERF1(1)                                                                               -------- --ANAC46                                                                                    <------- -At4g35610                                                                               XXXXXXXXXXX >At4g35610            <---------ARR14(2)                                                <---------TOE2(3) >RAP2.3(1)            --------->ARR14(2)                     <-----------GT1            <---------TOE1(3) -LBD16           ----------->GT1                            <-----------GT1       --------->DAG2 <-- >ATERF1(1)  <------ZmHOX2a(1)          ---------->DOF2<----------DOF2        *TSS---------->DOF2 ---   agcgttgcgaagagaggagattgtgaatccagtacaaggccttaaggccattaatgtctttttttaactcttattcagaaaatgaaaagtgaaggtaacg  9834000         <-----------GT1    <----------DOF2    <---------DAG2 ---->TEIL                      <---------ANAC58                                             <------ZmHOX2a(2) ->MYB52(1)                <----------DOF2                      --------->MYB59    <---------WOX13(1) --DOF5.7(2)         <----------DOF2                      ------------>CBF       --------->ATHB12<--- XXXXXXXXX>MIR417   <------------------------ANAC81      <-----------GT1      <---------ZAT6--------- -------ARR14(2) <----------DOF2<---------ANAC58   <---------ANAC46   --------->LBD16       <-------- ------>ARR14(2) <------------------------ANAC81   ----------->GT1<---------SPL7<---------YAB1------>ZmHOX2a(2)   aatttgctttatttctctcctttctttttctttggcttctcttcgaaacgatgtcgtttaaacaattcggtccggttatagtgtgattgaaatcgatccg  9834100        <-----------GT1                                     <---------GLK1(1)     --------->MYB52(2)<-------GAMYB                <----------DOF2               <----------DOF2 <---------ANAC58     <---------MYB46(3)          <---------MYB46(3)     <<<<<<<<<TBF1 <---------ANAC58     ----------->GT1         <---------TOE2(3)      --------->GLK1(2)        ------>ZmHOX2a(1) ---------CBF        <---------AtMYB61        <---------AtMYB61     <---------GLK1(2)        *TSS >ARR14(2)           --------->ALFIN1    <------MYB83     <---------ANAC58       <---------DAG2 -ARR14(2)         --------->ALFIN1      <------MYB46(1)  <---------ANAC58       --------->TOE2(3)   attgggtttgtttcggttcgagtgtggttgaatcggttcgatttggtttaggtggtttttgggtatcagagattcttcttcaacctttttctaatcctgc  9834200                        <---------ICU4                       <---------YAB1             <-------GAMYB    <---------ZAT18            <-----------RAV1(1)<---------ALFIN1       ---------->DOF2    ------->TEIL     --------->YAB1                 <------ZmHOX2a(2)           <-----------GT1  <---------ZAT18    <---------ICU4            --------->MYB52(1)      ------>ZmHOX2a(2)  ------->GAMYB     --------->ICU4            ----------->HVH21       <------ZmHOX2a(2) --------->ANAC58   <---------YAB1          ----------->RAV1(2)    <---------ANAC58            <----- --------->ANAC58 --------->YAB1        <---------MYB52(2)         <---------ANAC58      <-----------GT1   acaacgcacttcttctgttgtcatcatcatcgtccacttgaaacaaacctgacgatcaaagagaagattgcgatcgcaaatttctccattttttcagatc  9834300                                                 ---------->DOF2                                                ------>ZmHOX2a(1)                  ----------->GT1            ---------->ID1            --------->ANAC58       <---------TOE2(3)          ---------->DOF2          <---------TOE1(3)                                      --------->At5g28300        --------->ETT(2)          <---------DOF5.7(2)                                    ----------->GT1 -ZmHOX2a(2)--------->ANAC58    --------->DOF5.7(2)     <---------ARR14(2)              ----------->GT1   gaaattgatgtcgaaagctagggtttatacagatgttaacgttgttcgtcctaaagagtattgggactacgagtctctcgttgttcaatgggggtaaaac  9834400                                                                              <---------MYB46(3)                                                                          --------->ATHB12                              <---------YAB1        <---------AHL20(2)  <---------WOX13(1)                             <---------TOE2(3)      --------->AHL20(2)--------->ATHB12                            <-----------GT1     <---------YAB1       <---------AHL20(2)     ---------                 <----------DOF2            <----------DOF2          <---------YAB1         <--------    <----------DOF2      ------->TEIL <-----------GT1       <---------ANAC46  <-----------RAV1(1)   ttctagctttagaatttttctttgatgaatttacgatttttgacttctttttgataaattttcggtggaatttgattgatttgttgccaaatcgaattcg  9834500                      <---------TOE2(3)                                    --------->ICU4                      <---------TOE1(3)                        --------->GLK1(2) >ARR14(2)      --------->AHL20(2)                          --------->ANAC55(2) -ARR14(2)      <---------AHL20(2)--------->MYB59  <----------DOF2         <---------ARR14(2)      --   aaatcagagaaattggaattttttagggtttggacttaggtctcttgaagacactttgttttaagtatctattagcaaatattggattttgaaattcaac  9834600                                                                            <------ZmHOX2a(1)                                                                           ----------->GT1                                                                          ----------->GT1                                                <---------ICU4       <------MYB83                    <---------ANAC46           --------->ICU4       --------->MYB111(2)        --------->TOE2(3)                      <---------YAB1       --------->MYB111(1)            --      --------->GLK1(2)                     --------->ICU4      --------->DAG2                <------     <---------GLK1(2)                      <---------YAB1     ---------->DOF2         <---------ZAT14 ------->ALFIN1  <----------DOF2    --------->YAB1  <---------TOE2(3)<------MYB46(1)   --------->ZAT14   agtgtgagattcttaaatacttttgtgtgattcttcagtcatcaagatgattatgaggttgtgagaaaagttggtagaggaaaatacagtgaagttttcg  9834700  Previous    Next  AGI:  At2g23070.1    Description:  casein kinase II alpha chain, putative. similar to CKA2 (casein kinase II alpha chain 2), kinase [Arabidopsis thaliana] (TAIR:AT3G50000.1); similar to casein kinase II alpha subunit [Sinapis alba] (GB:CAD12663.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 9831045    to: 9833978    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g23080.1    Description:  casein kinase II alpha chain, putative. Identical to Probable casein kinase II subunit alpha [Arabidopsis Thaliana] (GB:O64817); similar to CKA1 (CASEIN KINASE ALPHA 1), kinase [Arabidopsis thaliana] (TAIR:AT5G67380.1); similar to CKA2 (casein kinase II alpha chain 2), kinase [Arabidopsis thaliana] (TAIR:AT3G50000.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72246.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine prote Range:  from: 9834193    to: 9836617    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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