Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                 --------->CCA1(2)                                     ----------->GT1          <---------ARR14(2)                                     <------MYB46(1)          <---------ARR11(3)                                    --------->MYB59           --------->ARR14(2)      --------->MYB52(1)            <---------TOE2(3) --------->GLK1(2)      ---------->DOF2        --------->ANAC46         --------->ARR14(2) ------ATHB12      --------->HSFB2a(2)   <---------AHL20(2)   <-----------ARR10           --------->ANAC58 ->MYB83           --------->HSFC1(1)<------MYB83     <---------ARR14(2)                  --------->ANAC58 ->MYB46(1)        <---------HSFB2a(2)   --------->AHL20(2)   --------->ARR11(3)          <---------ANAC55(2) --->WOX13(1)   --------->ARR11(3)--------->ICU4     <---------GLK1(2)                    --------->ANAC55(2)   tctataaccaaaggcaaacatctagaaatcgacgtaattaggtttaattagagaagaatctgaagatatacccccattgaacagcaagggactcgtaatc  9833600                                                                --------->ANAC46                                                                --------->ANAC58                                                                --------->ANAC58                                                           --------->DREB2C(2)                                                           --------->ATERF1(2)                                                           <---------ATERF1(2)                                                           --------->DEAR3(1)                                                           <-------PIF5                                                           ------->PIF5                                                          --------->DEAR3(2)                                                         --------->MYB52(1)                                                         <---------ATERF1(1)                                                        <---------ALFIN1                                                       --------->ZAT14                                                       <---------ABI4(2)                                                       <---------ZAT14                                                       <---------SPL7                                                       ------>NtERF2                                                      --------->DEAR3(1)                                                     --------->ATERF1(1)                                                    <---------RRTF1(1)                                                    ------>NtERF2                                                    <---------ATERF1(1)                                                    <---------RAP2.3(1)                                                    <---------DEAR4(2)                                                    <---------ORA47(2)                                                    <---------ERF1  --------->LBD16   --------->At4g35610                                                   <---------DEAR3(1)                 ----------->RAV1(2)                                                   <---------RRTF1(3)               ------>ZmHOX2a(2)                                   --------->ARR14(2)<------NtERF2<---------LBD16 --------->ARR11(3)                                   <---------ARR14(2)--------->RAP2.3(1)          <---------ARR14(2)                               --------->At4g35610 <---------RAP2.3(3)            <---------ARR11(3)                       --------->WRKY12            --------->ANAC46<---------ANAC46<------ZmHOX2a(2)                      --------->DOF5.7(2)   <---------ANAC58   --------->SPL7     --------->ARR14(2)                     --------->TOE2(3)      <---------ANAC58  <---------ALFIN1<---------At5g28300  <-       <---------MYB52(1) <---------bZIP60(1)      <---------RAP2.3(2)--------->ARR14(2)           --       ------>ZmHOX2a(1)  --------->bZIP60(1)<----------DOF2<-----------HVH21<-----------GT1   <-----   ccaatagtccttaggtctaacaacgttgacatcagcgtaaaccctagctttcgacggcgcaccggcacgccggatagatttaccgatcttctgagccagc  9833700                                                              --------->ARR11(3)                              <-----------RAV1(1)             <---------ARR11(3)                            <-------GAMYB                --------->HSFB2a(2)            <-----------HVH21 <---------MYB46(3)         <---------HSFB2a(2)  <---------YAB1--------->ANAC46       <-----------RAV1(1)--------->LBD16     ---------->DOF2     <-- --------ARR14(2)  --------->LBD16 <---------ANAC46      <---------ANAC46---------->DOF2         ---- ------->ARR14(2) --------->ANAC46<---------At4g35610   <---------LBD16--------->At5g28300      ----- -NtERF2   <----------DOF2 <-----------RAV1(1)  <---------MYB46(3)    ----------->GT1          ------   gtttctgatttttctttcacgcgcgattgctgttgttgctgatgttgttgttgttgattccggagatgttgacggtaaagagaagcgctggatgcgaaac  9833800                                                                                               ------                                                                                               <-----                                                                                             <-------                                                                                            ---------                                                                                            <------NtERF2                                                                                            <--------                                                                                            ---------                                                                                            ---------                                                                                            <--------                                                                                           ------>NtERF2                                                                                           <---------RAP2.6(1)                                                                                           <---------ATERF1(1)                                                                                           <---------RAP2.3(1)                                                                                           <---------RRTF1(1)                                                                                           <---------ORA47(2)                                                                                           <---------ERF1                                                                                          <---------DREB2C(2)                                                                                          <---------RRTF1(2)                                               <---------ATERF1(1)                        <---------RAP2.3(2)                                             <------NtERF2                                <---------RRTF1(3)                                            --------->LBD16                               <---------RAP2.3(3)                                           --------->DEAR3(1)                             <---------DEAR3(1)           <---------HSFB2a(2)            <---------LBD16                                 <---------RAP2.6(2)           --------->HSFB2a(2)      ------>ZmHOX2a(1)                                     <---------ANAC46           ------>ZmHOX2a(1)   <---------ARR14(2)                                         --------->ATERF1(2)          <---------LBD16      <---------GLK1(2)                                          <---------ATERF1(2)         ----------->RAV1(2)   --------->KAN4(2)                                         <------NtERF2 -------LBD16                 --------->HSFC1(2)                                         --------->ATERF1(1) ----->MYB52(1)               <---------HSFC1(2)--------->ATERF1(1)                    <---------DEAR3(1) ------>HVH21                 --------->HSFB2a(1)             <------ZmHOX2a(1)     <-----------RAV1(1) --->DEAR3(2)                 <---------HSFB2a(1)<----------ID1    <------ZmHOX2a(1)<---------MYB46(3)   gacggagattgtcctggagcgaagagagaagaagattcctcttcgccggagacgacgaagagaaggagaggagagagaagagattgttgttggcggcgga  9833900    <---------ANAC46 --->ATERF1(1)                                                                                    --- -NtERF2                                                                                     <------- --ANAC46                                                                                    -------- >ATERF1(1)                                                                               XXXXXXXXXXX -At4g35610            --------->ARR14(2)                                                <---------TOE1(3) >At4g35610            <---------ARR14(2)                     <-----------GT1            <---------TOE2(3) >RAP2.3(1)       ----------->GT1                            <-----------GT1       --------->DAG2 --- -LBD16      <------ZmHOX2a(1)          ---------->DOF2<----------DOF2        *TSS---------->DOF2 <--   agcgttgcgaagagaggagattgtgaatccagtacaaggccttaaggccattaatgtctttttttaactcttattcagaaaatgaaaagtgaaggtaacg  9834000         <-----------GT1    <---------DAG2    <----------DOF2 ------>ARR14(2)                <---------ANAC58                                             <------ZmHOX2a(2) --DOF5.7(2)               <----------DOF2                      --------->MYB59    <---------WOX13(1) ->MYB52(1)          <----------DOF2                      ------------>CBF       --------->ATHB12<--- XXXXXXXXX>MIR417   <------------------------ANAC81      <-----------GT1      <---------ZAT6<-------- ---->TEIL       <------------------------ANAC81   ----------->GT1<---------SPL7<---------YAB1------>ZmHOX2a(2) -------ARR14(2) <----------DOF2<---------ANAC58   <---------ANAC46   --------->LBD16       ---------   aatttgctttatttctctcctttctttttctttggcttctcttcgaaacgatgtcgtttaaacaattcggtccggttatagtgtgattgaaatcgatccg  9834100        <-----------GT1                                     <---------GLK1(1)     --------->MYB52(2)<-------GAMYB                <----------DOF2               <----------DOF2 <---------ANAC58     <---------MYB46(3)          <---------MYB46(3)     <<<<<<<<<TBF1 <---------ANAC58     ----------->GT1         <---------TOE2(3)      --------->GLK1(2)        ------>ZmHOX2a(1) ---------CBF        --------->ALFIN1         <---------AtMYB61     <---------GLK1(2)        *TSS -ARR14(2)           <---------AtMYB61   <------MYB46(1)  <---------ANAC58       --------->TOE2(3) >ARR14(2)         --------->ALFIN1      <------MYB83     <---------ANAC58       <---------DAG2   attgggtttgtttcggttcgagtgtggttgaatcggttcgatttggtttaggtggtttttgggtatcagagattcttcttcaacctttttctaatcctgc  9834200                        <---------ICU4                       <---------YAB1             <-------GAMYB    <---------ZAT18            <-----------RAV1(1)<---------ALFIN1       ---------->DOF2    ------->TEIL     <---------ICU4                 <------ZmHOX2a(2)           <-----------GT1  ------->GAMYB      --------->YAB1            --------->MYB52(1)      ------>ZmHOX2a(2)  <---------ZAT18   --------->ICU4            ----------->HVH21       <------ZmHOX2a(2) --------->ANAC58   <---------YAB1          ----------->RAV1(2)    <---------ANAC58            <----- --------->ANAC58 --------->YAB1        <---------MYB52(2)         <---------ANAC58      <-----------GT1   acaacgcacttcttctgttgtcatcatcatcgtccacttgaaacaaacctgacgatcaaagagaagattgcgatcgcaaatttctccattttttcagatc  9834300                                                 ---------->DOF2                                                ------>ZmHOX2a(1)                  ----------->GT1            ---------->ID1            --------->ANAC58       <---------TOE2(3)          ---------->DOF2          <---------TOE1(3)                                      --------->At5g28300        --------->ETT(2)          <---------DOF5.7(2)                                    ----------->GT1 -ZmHOX2a(2)--------->ANAC58    --------->DOF5.7(2)     <---------ARR14(2)              ----------->GT1   gaaattgatgtcgaaagctagggtttatacagatgttaacgttgttcgtcctaaagagtattgggactacgagtctctcgttgttcaatgggggtaaaac  9834400                                                                              <-----------RAV1(1)                                                                          --------->ATHB12                              <---------YAB1        --------->AHL20(2)  <---------WOX13(1)                             <---------TOE2(3)      <---------AHL20(2)--------->ATHB12                            <-----------GT1     <---------YAB1       <---------YAB1         ---------                 <----------DOF2            <----------DOF2          <---------AHL20(2)     <--------    <----------DOF2      ------->TEIL <-----------GT1       <---------ANAC46  <---------MYB46(3)   ttctagctttagaatttttctttgatgaatttacgatttttgacttctttttgataaattttcggtggaatttgattgatttgttgccaaatcgaattcg  9834500  Previous    Next  AGI:  At2g23070.1    Description:  casein kinase II alpha chain, putative. similar to CKA2 (casein kinase II alpha chain 2), kinase [Arabidopsis thaliana] (TAIR:AT3G50000.1); similar to casein kinase II alpha subunit [Sinapis alba] (GB:CAD12663.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) Range:  from: 9831045    to: 9833978    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g23080.1    Description:  casein kinase II alpha chain, putative. Identical to Probable casein kinase II subunit alpha [Arabidopsis Thaliana] (GB:O64817); similar to CKA1 (CASEIN KINASE ALPHA 1), kinase [Arabidopsis thaliana] (TAIR:AT5G67380.1); similar to CKA2 (casein kinase II alpha chain 2), kinase [Arabidopsis thaliana] (TAIR:AT3G50000.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72246.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR011009); contains InterPro domain Serine/threonine prote Range:  from: 9834193    to: 9836617    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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