Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          =============================================================================                        --------------->AGL15                      ------->TEIL                                                                ---                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                       <---                    <---------SPL7                                                              <----                   --------->ANAC55(2)                                                          -----            <---------GLK1(1)                                                                   -----            <---------WOX13(1)                                                                  <----           <---------ANAC58                                             <---------ANAC55(2)     <----        <---------WOX13(1)  ----------->HVH21                           <---------ANAC46        -----      --------->ATHB12--------->SPL7    <xxxxxxxxxxxxxxxxsmallRNA(s)    <---------ANAC55(1)     -----     --------->ICU4--------->ANAC46    --------->ANAC58           --------->DAG2                <---- -----TEIL <---------ANAC58<-----------HVH21  --------->YAB1     ---------->DOF2               ------ ----At4g35610 <---------ANAC58        --------->ANAC58     ----------->GT1      <---------At4g35610 --->At4g35610 <---------ANAC58        --------->ANAC46--------->ZAT6   --------->ANAC55(2) ---------   tgcatccatgatggattgcctacgtaccctgtgaaggaatcaagccattcgtagttctcactaggtataaagttatgtgtttcttctgagtatcaaaaga  9770100                                                xxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                ------>NtERF2                                               <---------ALFIN1                                               --------->DEAR3(1)   <----------DOF2                           <---------ATERF1(1) =========================================MADS_MADS --->ZmHOX2a(2)                             --------->RAP2.6(2)                              -------- ---ZmHOX2a(2)                              ------->GAMYB                          --------->TOE2(3) -----ARR11(3)                              --------->DEAR3(1)                     --------->TOE1(3) ---->ARR14(2)                             xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <---------YAB1 ----- ---->ARR11(3)                             --------->MYB46(3)                   <-----------GT1 <---- -----ARR14(2)                        <---------MYB52(1)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) -----ARR14(3)                       --------->At5g28300               --------->GLK1(1)     <------- ---->ARR14(3)                       <-------GAMYB<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <------MYB46(1) ---->AGP1               <---------DAG2  <-----------GT1               <---------GLK1(1)   <---------DEAR3(2) -------ARR10            <----------DOF2---------->DOF2               <---------ARR11(3)   <------MYB83 --->RVE1(1)   ----------->RAV1(2)  ----------->GT1                   --------->ARR11(3)  <---------DEAR3(1) ->DOF2  --------->ZAT14<-----------------AGL3--------->ATERF1(1)  <---------TOE1(2)------>ZmHOX2a(1)   tcttccttttgtgaagtccctgaggcgctttatataggccgttaaaccgcctccctagcgatattctcgtaagatttccatttatccttaagtcggttct  9770200                         <----------DOF2                     <---------ETT(1)                  <---------RVE1(1)                          ----------->HVH21                 <---------AHL20(1)                         ------>ZmHOX2a(2)                     ---                 --------->AHL20(1)                   <---------ANAC58                           ----       --------->YAB1 <-----------GT1                 <---------ANAC58                          -----  <---------KAN4(2)   <---------AHL20(2)           <---------GLK1(1)        <---------ATHB12    <---- <------ZmHOX2a(1)<---------CCA1(1)                --------->GLK1(1)<---------ARR11(3)    <---------ICU4 ->ARR14(2)   <---------TOE2(3)                  ==================HOX2a_HOX2a           <---------YAB1 ---->HSFB2a(2)  --------->ARR11(3)        ===============================RAV        <---------DAG2 < -----HSFB2a(2)  <---------ARR11(3)        <-----------RAV1(2)----------->RAV1(1)    <----------DOF2- --ARR14(2)  ---------->DOF2     <---------LBD16 <------ZmHOX2a(1)  --------->ARR11(3)  <xxxxxxxxxxxx   ggaggataatcgtattaaagatattttctttattcttcggaggcttcagaaggatttcttgatccgacattatcttcaaacattctcctttatcatttcc  9770300                            --------->ARR14(2)                            <---------ARR14(2)                          --------->LBD16                         <---------HSFB2a(2)              <------ZmHOX2a(2)              ==============================HOX2a_HOX2a             <---------ARR14(2)             <-----------ARR10             <---------ARR14(3)                                                                 <----             --------->ARR11(3)                                                              <-------             <---------ARR11(3)                                                          <---------DEAR3(1)             --------->ARR14(2)      ------>ZmHOX2a(1)                                 xxxxxxxxxxxxxx             --------->ARR14(3)    ------>ZmHOX2a(2)                                --------->ANAC58         ---------->DOF2<---------LBD16           ----------->GT1                   --------->ANAC58 ------->DOF2<---------AGP1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    --------->ANAC46 ----->LBD16--------->RVE1(1)    <---------ARR11(3)                                <---------LBD16 ---->HSFB2a(2)=============================HOX2a_HOX2a                  <---------At4g35610<-------- -----HSFB2a(2)------>ZmHOX2a(2) --------->ARR11(3)     <-----------GT1<-----------RAV1(2)  --------- ---------HSFB2a(1)    <---------At5g28300       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxx -------->HSFB2a(1)   <-----------GT1<----------DOF2<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxx xxxxxxxxxxxsmallRNA(fl3)--------->HSFB2a(2)  --------->ATHB12  <----------DOF2  <---------REM1(2)   gaaagtcccataaaagatcttattttaccggaaatgatcctttgagaatgaatggtttttacaagtctttgcctcaggtgttcttcacggctcggtggtc  9770400                                                  <---------YAB1                                              <----------DOF2                                          <---------ZAT18                                          ------>NtERF2                  <---------At4g35610                                          --------->ZAT18                --------->At4g35610                                         <---------ANAC58             <---------MYB52(1)          <---------ANAC58               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)          <---------ANAC46              --------->PCF2               --------->ZAT2       --------->ALFIN1                 --------->ATERF1(1)          <---------At4g35610     <---------O2  --------->MYB52(1)   ------>NtERF2                --------->At4g35610 -----MYB46(3)<---------HSFB2a(2)    <---------HSFB2a(2)             <---------ZAT2 --MYB46(3)   --------->HSFB2a(2) <---------ARR14(2)               <-----------RAV1(2) xxxxxxxxx>smallRNA(s2)           --------->ARR14(2)            <---------At4g35610 -AtMYB61 <---------ANAC58    ----------------->AGL1            --------->At4g35610 >ALFIN1 <------NtERF2       ------->TEIL<---------ANAC58    ---------->DOF2      ---------->DOF2 xxxxxxx>smallRNA(fl3)       --------->MYB52(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <---------RAP2.6(3) xxxxxxxxxx>smallRNA(le3)   <-----------GT1<------NtERF2    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   gtttgagaggtggcttcgagcaaacggtatgtaccggttcggggcgcgcttgatgactgtccattaagctcagttggctgtctccaaagccgatatatat  9770500                                                                                       ------>ZmHOX2a(2)                                                                                     xxxxxxxxxxxxxxxx                                                                                   <---------MYB46(3)                                                                                 <-------GAMYB                                                                                ----------->GT1                <---------YAB1                                                  <---------DEAR3(2)              <-----------GT1                                                   <---------MYB46(3)          <---------MYB52(1)                                                   <---------DEAR3(1)     <---------ALFIN1                        <-----------GT1                  --------->RAP2.6(3)    --------->LBD16                      <------ZmHOX2a(1)                   ------------>AtMYB77   --------->ANAC58                    <---------TOE1(2)                     =================HOX2a_HOX2a   --------->ANAC58                    <---------TOE2(2)                     <------ZmHOX2a(1)   --------->ANAC46          <---------DEAR3(1)      --------->ANAC46     --------->HSFB2a(2)  <---------LBD16--------->ATHB12    --------->TOE1(2)       <-----------GT1----------->HVH21--------   gtttcccgcaccgttttcacgattggctcgggctgtgttcataggattaacatccgagccattttacgaagtctctccaggacggttgatcgaataaggt  9770600                                                                                               <-----                                                                                               ------                                                                                               ------                                                                                              <------                                                                                              -------                                                                                        --------->ALFIN1                                                                                      <xxxxxxxxxxxxxx                                                                                     <----------DOF2                                                                                    <---------ANAC58                                                                                    <---------ANAC46                                                                                    <---------ANAC58                                                                                 xxxxxxxxxxxxxxxx>smallRNA(i)                                                                            xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                           xxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                           xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                 <---------TOE2(2)                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                 <---------TOE1(2)                       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                              --------->YAB1                --------->TOE2(3) xxxxxxxxxxxxxxxxxxxxxxx       <----------DOF2       <---------ATHB12             <---------YAB1 xxxxxxxxxxxxxxxx>smallRNA(i)     <-------TEIL          --------->WOX13(1)       <---------WOX13(1)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxx>smallRNA(se3)  ------>NtERF2  <-----------GT1 <---------YAB1 <xxxxxxxxxxxxxxxxsmallRNA(i)<-- ->MYB59      >>>>>>>ZML2------------>CBF          <------------CBF  <---------MYB52(1) <---------ANAC46   cccaaggtgctttgttctaggctaggggccaatcatatgtttaaccatgaggtgattgttattcttagactgtttggctcggtcttgcttgtgggggaat  9770700                    <---------ICU4                 <---------ICU4                 --------->YAB1                 -------->HAHB4     ----------->RAV1(1) ----ARR14(2)   <---------YAB1 --->GLK1(2)  --------->YAB1                                                                      <-- --->ARR14(2)--------->ICU4                       <-------TEIL                              --------- ---GLK1(1) --------->AHL20(1)                 --------->At4g35610                         --------->AHL20(2) -->GLK1(1)--------->YAB1 <---------MYB59     --------->ANAC58                ------------>CBF ------ xxxxxxsmallRNA(si3)--------->ZAT6            --------->ANAC58      ----------->GT1        <---------AHL20(2) >smallRNA(se3) --------->ICU4            <------ZmHOX2a(1)       <---------ZAT18       <---------ICU4 -------ETT(1)<---------ICU4          ---------->DOF2             --------->ZAT14      --------->ICU4   ccgaccccaacaaaaataatgatcactacttaactagcacaaaaggataagctacatagcctacatagtgtggtcaaaaacacaatctactaattaatca  9770800                                                    --------->GLK1(1)                                                    <---------GLK1(1)                                           ---------->DOF2                                    <---------HSFB2a(1)                      <------------CBF    ------>ZmHOX2a(1)         --------->AHL20(2)         --------->KAN4(1)       --------->TOE2(3)            <---------KAN4(1)           <---------AHL20(2)     <---------AHL20(2)     <---------AHL20(2)  ----------->GT1 --------------->AGL15 --------->AHL20(2)     --------->AHL20(2) --------->AHL20(2)  --------->ATHB12--------->KAN4(2)       --------->TOE2(3)        <---------AHL20(1) <---------AHL20(2) --------->ICU4  --------->HSFB2a(1)   ----------->RAV1(1)         --------->AHL20(1) -------ICU4        <---------YAB1  --------->HSFC1(2)   --------->ANAC46       <---------WOX13(1) >WOX13(1)         <----------DOF2  <---------HSFC1(2) <-----------GT1        --------->ATHB12 --->YAB1<---------AHL20(2)    --------->YAB1     <------ZmHOX2a(1)          <---------YAB1        <-   tatttatttcattaattaagtctttattggtaattagaacattcctaaagaaggatttcacaacattaaatatggaatgctgattgaatataatcaggga  9770900                                                                 --------->O2                                                                 <---------TGA1a                                                                 --------->bZIP60(1)                                                                 --------->TGA1a                                                                 <---------O2                                                              ------->GAMYB                                                              =============MYC_MYB                                                              ----------->HVH21                                                             --------->MYB46(3)          <---------ANAC58                                   --------->DEAR3(2)          <---------ANAC58                                  --------->At4g35610         <-------TEIL                <---------REM1(1)     --------->GLK1(2)    --------->AHL20(2)               --------->ALFIN1      --------->ARR14(2)  --------->TOE2(3)                <---------ANAC58        <---------ARR14(2)  <----------DOF2<---------ARR14(2)<---------ANAC58      <---------At4g35610  --------->TOE1(3)      <------ZmHOX2a(1)      <---------ATHB12 <---------bZIP60(1) ----------GT1   --------->ARR14(2)<---------ANAC46      --------->At4g35610    <---------ATHB12   ttaactttaaatgcatgcggttttggaggatgtgtttgggtgtagatgtaatcaaggtgagcatccgacgtcgttttcatcaaacattcttctgtttcgc  9771000  Previous    Next  AGI:  At2g22940.1    Description:  similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G45560.1) Range:  from: 9768735    to: 9770542    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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