Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                      -                                                                                                  ===                                                                                        =============                                                  --------->At4g35610                   <----------DOF2                                               --------->At4g35610                     <---------DAG2                                               --------->ZAT2               --------->LBD16       ---                                               <---------At4g35610        <---------LBD16      ------      <-------TEIL                             <---------ZAT2           --------->ARR14(2)     ------   <------ZmHOX2a(1)                           ----------->RAV1(2)      <---------ARR14(2)     <----- ------->MYB52(1)                            <-----------RAV1(2)   <----------DOF2  <---------ALFIN1- -------->DOF2                               --------->MYB46(3) <---------ALFIN1   ------>ZmHOX2a(2)-   ccaaaggattcatcttcatcaacatcgcaagaggttgtccaattccaccagctgctccaagtatcgccactttgaatccgggtgatccaccttttgcccg  9698800                                 --------->TOE2(3)                                 --------->YAB1                                 >>>>>>>>>RAP2.2                              --------->WOX13(1)                            <---------At4g35610                            --------->At4g35610                           --------->ANAC58                           --------->ANAC58                         <---------MYB52(1)                        <-----------HVH21    ------>NtERF2       <-----------TGA1    --------->MYB52(1) --------->ANAC58   --------->DEAR3(1)  --------->TGA1a -------->ANAC58       --------->ANAC58 ================================bZIP_DOF ================================bZIP_DOF                      ------->GAMYB ------->DOF2          ===============================================MYC_MYB ----->HVH21           --------->O2                       <------ZmHOX2a(2) --->ANAC46            --------->bZIP60(2)               <-----------ARR10 ----ETT(1)            --------->ANAC46                  --------->AGP1                        ------ -------->ANAC58  ----------->HVH21                     --------->At4g35610                    ------ -------->ANAC46----------->RAV1(2)         <---------ATHB12 -------->P ---------->DOF2  <------ZmHOX2a(2)   acaagccacccgattcaaacctgacccgtcagcaatctaaatccaaatcatcgaaatcagatcaacccaaaaaaaaaagaatcaaacttcgatcaccaaa  9698900                                                                                                -----                                                                                       <---------MYB46(3)                                                                                       <------MYB83                                                                                       --------->MYB52(2)                                                                                       <------MYB46(1)                                                                        --------->GLK1(2)       <----                                                                       <---------GLK1(2)       <-----                                                                 <---------At4g35610   --------->MYB55(2)                                                                 --------->At4g35610 <---------MYB52(1)                                                   <------ZmHOX2a(1) ----------->ARR10<---------TOE2(2)     <---------TOE2(3) ------->GAMYB     <---------YAB1     <---------At4g35610   <-------TEIL<------ >MYB83 --------->GLK1(2)       ------->TEIL<---------YAB1  --------->At4g35610 --------->ARR14(2) >MYB46(1)            --------->ANAC46--------->ICU4  <------ZmHOX2a(1)--------->ARR14(2)     -------   ttggtttaagaatcagagaattcaacgaaatttgaacctgattatgaagattaggaggattgagatgagcagagattctcgcgatacgttggtttggatc  9699000                                                                              --------->SPL7    --------->At4g35610                                             --------->At5g28300    <---------At4g35610                                            ----------->GT1  <---------RAP2.6(2)                                             ----------->GT1            <------- ->ZmHOX2a(2)                                                   --------->GLK1(2)            <------- ---TEIL---------->DOF2                             ----------->HVH21     <---------------AtSPL8 -ZmHOX2a(2)        <----------DOF2      <---------YAB1        <---------ARR14(2)        <---------AHL20(2) ---ARR14(2)     ---------->ID1     <---------TOE2(3)    --------->At5g28300<---------SPL7  --------- -->ARR14(2) <----------DOF2 ------->GAMYB          <------ZmHOX2a(2)  ---------->DOF2   --------->AHL20(2)   catggctgcttaaagctttgttctttaacaacgaaattgaggtctgattaagcgatcacggtgaagaatcggtaaaagggtacgaagagatttatataat  9699100                   --------->O2                   <---------O2                   --------->bZIP60(1)                   --------->TGA2(1)                   <---------ANAC46                   ----------->GT1                   <---------bZIP60(1)                   <---------TGA2(1)                  <-----------STF1                  ----------->STF1                 <---------TGA2(2)                ----------->TGA1------>ZmHOX2a(2)                                                   -              <---------ICU4    <-------TEIL                                                 --------     ----------->GT1           <------ZmHOX2a(2)                              <---------ANAC58      < --YAB1<---------ZAT6         ------->TEIL     --------->ALFIN1               <---------ANAC58      - --AHL20(2)  --------->ICU4   <---------ARR14(2)                    <---------At4g35610    --------->ALFIN1 >AHL20(2) ---------->DOF2    --------->ARR14(2)           <---------ZAT14 <-----------RAV1(1)      <   agagagatagtgataaagatgacgtcaaaatggatccatgtattgggaagtgtggcaagagaacagagagagcttatctgtcgtttctccgaagtgtgga  9699200               --------->LBD16             <---------LBD16           --------->ARR14(2)           <---------ARR14(2)     --------->ANAC58                                               <---------AHL20(1)     --------->ANAC58                                               --------->AHL20(1)    --------->SPL7                 <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------AHL20(2)  <---------SPL7                  *TSS <xxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------DEAR3(2)           --------->ZAT14                       --------->AHL20(2)             <- -------------->AtSPL3        <---------ZAT14           <-----------GT1  <---------AHL20(2)       <-- ->ALFIN1 <---------GLK1(1)   <-------TEIL          <----------DOF2<---------AHL20(2)       <-------- ---------------AtSPL3      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------->AHL20(2)       --------- -------------->AtSPL8     --------->LBD16    --------->AtMYB61<---------YAB1        ----------->GT1 ---------------AtSPL8   <---------LBD16      <xxxxxxxxxxxxxxxsmallRNA(le3)   ------------>CBF <-----   agacggtacgacatttccggtataaattccggtacagttcaagtcaaaccataccttttaaacttataattttattttaaaacaattttgttaaaatctt  9699300                                                <---------RVE1(1)                                               --------->ARR11(3)                                             <---------TOE1(1)                                             --------->ANAC58                                            --------->SPL7                                        <---------------AtSPL8                                        <---------------AtSPL3                                        --------------->AtSPL3                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                               <---------YAB1--------->ANAC58                              xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                           <----------DOF2<---------SPL7                          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                      <---------ANAC46<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                    xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                         <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     <xxxxxxxxxxxxxxxxsmallRNA(i) --------At5g28300xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               --------->ZAT14 ---------GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------->LBD16<---------ZAT18       <-------- -ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)   <---------LBD16  <---------ZAT14 --------->AtMYB61 >ARR11(3)--------->ZAT14--------->ZAT18--------------->AtSPL8    <---------HSFB2a(2) <xxxxxxxxxxxxxx -----DOF2<---------ZAT14<-------TEIL --------->MYB52(1)  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) <----   ttactgcttaactacagtcaaattatgtgcattatgttcagaacggtacgatatttccggtataaattccagtacagttcaagtcaaaccatacctttta  9699400                                                                                           --------->ARR14(2)                                                                                           <---------ARR14(2)                                                                                 <---------DEAR3(2)                                                                                --------------->AtSPL3                                                                                <---------------AtSPL3                                                                       <---------YAB1--------->ANAC58                                                                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                      xxxxxxxxxxxxxxxx>smallRNA(i)                                                                     xxxxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                   <----------DOF2<---------SPL7                                                                   xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                  xxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                                 <-------TEIL   --------------->AtSPL8                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                 --------->ZAT18<xxxxxxxxxxxxxxxxxxxx                                                                xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                                               <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                              xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                           xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                          xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                                 xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)--------->ANAC58                                               --------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                               xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)--------->SPL7                                           <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)--------->RAP2.6(3)                                          <---------At4g35610 <---------ANAC46 --------->SPL7                                       <---------At5g28300xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                      <-----------GT1     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        <---------AHL20(2)            xxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)     <------ZmHOX2a(1)------        --------->AHL20(2)         <xxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <---------AHL20(2)          <----------DOF2      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) <-------   <---------YAB1               <---------ARR11(3)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)<---------GLK1(1) --DOF2--------->AHL20(2)       --------->ARR11(3)xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxxx xsmallRNA(le3)               <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) -------GT1              ----------->GT1  --------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   aacttataattttattctaaaacaattttgttaaaatcttttacagcttagctacagtcaaattatgtgcattatgttcaggacggtacgacatttccgg  9699500                                                                                                    x                                                                                                   xx                                                                                                  xxx                                                                                         xxxxxxxxxxxx          <-------TEIL                          <---------AHL20(2)                     --------->At4g35610          --------->ZAT14           <-----------GT1                            <---------At5g28300xxx       --------->LBD16          <----------DOF2 --------->AHL20(2)            <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------LBD16      <xxxxxxxxxxxxxxxsmallRNA(le3)                       <-----------GT1     xxx xxxsmallRNA(i2)   <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                       <----------DOF2      xxxxx --->LBD16<---------ZAT14 --------->AtMYB61    --------->AHL20(2)       <---------ARR11(3)   xxxxxxxx --LBD16xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   <---------AHL20(2)       --------->ARR11(3)xxxxxxxxxxx xsmallRNA(fl3)<xxxxxxxxxxxxxxxxsmallRNA(i)<---------YAB1        ----------->GT1       xxxxxxxxxxxxxx   tataaattccggtacagttcaagtcaaaccataccttttaaacttataattttattctaaaacaattttgttaaaatcttttactgcttagctacagtca  9699600                            <---------RVE1(1)                           --------->ARR11(3)                         <---------TOE1(1)                    <---------------AtSPL3                    <---------------AtSPL8                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)           <---------YAB1--------->ANAC58          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)       <----------DOF2<---------SPL7      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <-------TEIL   --------------->AtSPL3     --------->ZAT18--------------->AtSPL8  <---------ANAC46--------->MYB52(1)  xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxx>smallRNA(si3)--------->ANAC58                                               <---------AHL20(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)               <---------ZAT14                       --------->AHL20(2) xxxxxxxxxxxxxxxxxxx>smallRNA(le3)             --------->LBD16                         --------->AHL20(2) xxxxxxxxxxxxxxxxxx>smallRNA(i2)   --------->LBD16<-------TEIL              <-----------GT1 xxxxxxxxxxxxxxx>smallRNA(fl3)   <---------LBD16  --------->ZAT14       <----------DOF2<---------AHL20(2) xxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)              --------->AtMYB61<---------YAB1 xxxxxxxxx>smallRNA(le3)--------->SPL7       <---------LBD16      <xxxxxxxxxxxxxxxsmallRNA(le3)   aattatgtgcattatgttcagaacggtacgatatttccggtataaattccggtacagtttaagtcaaaccataccttttaaacttataattttattctaa  9699700  Previous    Next  AGI:  At2g22780.1    Description:  PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); malate dehydrogenase. Identical to Probable malate dehydrogenase, glyoxysomal precursor [Arabidopsis Thaliana] (GB:O82399); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G09660.1); similar to Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures (GB:1SEV); similar to Malate dehydrogenase, glyoxysomal precursor (GB:P19446); contains InterPro domain Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal; (InterPro:IPR015955); co Range:  from: 9696495    to: 9699234    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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