Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100         <---------AHL20(2)      --------->AHL20(2)                ----------->GT1      <---------AHL20(1)            <---------TOE2(3)      <---------AHL20(2)          ---------->DOF2 -------->ANAC55(2)               --------->MYB52(1) ---------GT1             --------->GLK1(1)                                                         < --AHL20(2)              --------->ARR11(3)                                               ----------- -AHL20(1)               <---------ARR11(3)                                             ---------->DOF2 >AHL20(1)   ----------->GT1----------------->AGL3                              <---------YAB1    <--   ttacataatttttttgggtaaaatggagatatcaaataaaggaagtttatttgtagtagtatacatttcttcggtttcagttttgattcagaaagtttat  9625100                                                                                             <-------                                                                                           <---------                     <-----------GT1                                                   <---------AHL20(2)              <----------DOF2                                --------->ARR14(2)        <-----------GT1 -----------GT1    --------->YAB1                            <---------ZAT14   <---------TOE2(3) >GT1  --------->AHL20(2)                                    --------->ZAT14   --------->MYB59 ------ -------AHL20(2)  <---------YAB1                             <---------ARR14(2)<---------TOE1(3)<----   tttttctatgtaaatactttataatactgttccttctgtctcatgtgttctatgaactatgtgtatactgtatacatattttaggttattaacttggtac  9625200                                                                    --------->AHL20(1)                                                                    <---------AHL20(1)                                                                    --------->AHL20(2)                                    --------->MYB46(3)              <---------AHL20(2)                                  --------->MYB52(1)          --------->TOE2(3)                               --------->ANAC46           --------->GLK1(1)<---------HSFB2a(2)    <---------ICU4            ------>MYB46(1)             <---------GLK1(1)--------->HSFB2a(2) --SPL7                       ------>MYB83             --------->ANAC58    --------->LBD16 ------AtSPL3               --------->AtMYB61          --------->ANAC58    ------>ZmHOX2a(1) --->SPL7                  --------->MYB46(3) ----------->GT1 --------->TOE1(3)         --------->WRKY38(1) -----YAB1    ---------->DOF2----------->RAV1(1)>>>>>>>>>GATA-1------>ZmHOX2a(1)   <------------CBF   gattactaattagccctcaagctgtatcgaccaacacaacgactcaaatagataaaaacgaaatccttaatttattcctcgaatacattgttgactctta  9625300                                                                                          <---------HSFB2a(2)                                                                                          --------->HSFC1(1)                                                                                          --------->HSFB2a(2)                                                                                         ------>ZmHOX2a(2)                                                                                        --------->CCA1(2)                                                                                        <------ZmHOX2a(2)                                                                                       <---------AGP1                                                                                       --------->ARR14(3)                                                                                       <---------ARR14(3)                                                                                       --------->ARR11(3)                          <-----------GT1                                              <---------ARR11(3)                      <----------DOF2                                                  <---------ARR14(2)                   ---------->ID1                                                      --------->AGP1                <----------DOF2                    <---------GLK1(2)              <---------ANAC46             <-----------GT1                     ------>ZmHOX2a(1)            <---------ANAC58          <---------AHL20(2)                     <---------YAB1         <----------DOF2--------->ARR14(2)      <------------------------ANAC81          ----------->RAV1(2)  <----------DOF2  ----------->ARR10 <------------------------ANAC81          <----------DOF2   <<<<<<<<<TBF1     <---------ANAC58   cttccttcttatttttttcttttccttttctctctctctattctctttctcctgattcgttcttcttcatctttctttggccttgcgaagatctagaaaa  9625400                   ---------->DOF2                 ------>ZmHOX2a(2)                <------ZmHOX2a(2)                --------->CCA1(2)                                                   --------->HSFC1(2)               --------->ARR14(2)                                                   --------->HSFB2a(1)               <---------ARR11(3)                                                  <---------YAB1               --------->ARR11(3)                                              <------ZmHOX2a(2)               <---------AGP1                                                 <---------ARR11(3)               --------->AGP1                                            --------->LBD16         ------->TEIL                    --------->AHL20(2)             <---------HSFB2a(2)       --------->ZAT18      <------ZmHOX2a(2) <---------AHL20(2)        --------->HSFB2a(2)      --------->ANAC58     <---------ARR11(3)--------->AHL20(2)         <-----------RAV1(2)      --------->ANAC58     --------->ARR11(3)<---------AHL20(2)        ------>ZmHOX2a(2)    <<<<<<<ZML2<---------ARR14(2)    ----------->GT1         ----------->ARR10--------->ARR11(3)   accctagaacgcaccaagatctaaaggaagatcaaaatagggtttaaattaatggggagagggaagattgtgatccagaagatcgatgattccacgagta  9625500               ---------->DOF2             <---------------AGL15             --------------->AGL15                                     ------>NtERF2            ----------------->AGL2                                    --------->DEAR3(1)            ----------------->AGL3                                   <------NtERF2       <---------DAG2                           --------->ARR11(3)  ------>NtERF2       <----------DOF2                          <---------ARR11(3) --------->DEAR3(1)            ---- --------->ANAC46                           ---------->DOF2        <---------DEAR3(1)            <--- --------->bZIP60(2)                --------->ANAC58              --------->ATERF1(1)          ------ --------->ANAC58                   --------->ANAC58             <---------ATERF1(1) <---------ICU4 --------->ANAC58     ---------->DOF2 ---------->DOF2           ----------->HVH21   <---------YAB1  -   gacaagtcactttctccaaaagaagaaagggtctcatcaagaaagctaaagaacttgctattctctgcgacgccgaggtctgtctcatcattttctccaa  9625600                                                                  <-----------GT1                                                              <----------DOF2                                                             ------>ZmHOX2a(2)            --------->REM1(1)                            --------->LBD16                 <---------RVE1(1)          ------>ZmHOX2a(2)       <---------ARR11(3)  <-----------RAV1(2)              <------ZmHOX2a(2)         --------->CCA1(2)     --------->ANAC58  <---------ZAT2                      --------->AGP1             <------ZmHOX2a(2)     --------->ANAC58  <---------At4g35610                 <---------AGP1            --------->AGP1 ----->ZAT6            --------->ZAT2                      --------->ARR11(3)        <---------ARR11(3) ------ALFIN1          --------->At4g35610 <----------DOF2<---------CCA1(2)          --------->ARR11(3) ----->RAV1(1)  <----------DOF2           --------->TOE2(3)<---------ARR11(3)        --------->ARR14(2) ---------->HVH21     ------>NtERF2     XXXXXXXXXXXXXXXXXXXXX>MIR4221                <---------AGP1   cactgacaagctctatgactttgccagctccaggtttctctcttcctttattcaattcttagatcttttaacatctacatacctatagatctacatctat  9625700                                             --------->ANAC55(2)                                            ------->TEIL                                            <-------TEIL                                            <---------------AtSPL3                                            --------------->AtSPL8                            ----------------->AGL3         --------->ARR11(3)                    <---------AHL20(2)      --------------->AtSPL3                   <---------YAB1       <---------------AtSPL8          <-------TEIL                   XXXXXXXXXXXXXXXXXXXX>MIR860  ------->TEIL            --------->ZAT18                 --------->YAB1         --------------->AtSPL8   --------->ALFIN1           --------->ARR11(3)--------------->AGL15         <---------ARR11(3)           <---------ARR11(3)<---------------AGL15     <---------AHL20(2)            <---------ARR14(2)          <---------CCA1(2) <-----------------AGL3    --------->AHL20(2)<---------ZAT14   ------->TEIL <---------YAB1          <---------------AtSPL3   <-----------RAV1(1) --------->ARR14(2)   ctatgtatttgtatatctataataaatggaactatatataggtatgtacgtacttatataatatcatgtgtgggttcactacaagaatataggctatttc  9625800                                            <----------DOF2                                          <-------TEIL                                  <------MYB46(1)                                  <------MYB83                                 --------->MYB111(2)                                 --------->MYB59                                 --------->MYB46(2)                                 <---------MYB46(3)                       --------->ATHB12 <---------ZAT18                       <--------ATHB1  <---------ANAC58                                       -------                      --------->ICU4   <---------ANAC46                                    ----------                      <---------ATHB12 <---------ANAC58                       ------->TEIL <---------DOF5.7(2)              --------->AHL20(2) --------->MYB111(1)                    <-----------GT1  --------->DOF5.7(2)   tctaagagggtttggattaattcaatgatttgtgtttggtagcgtgcatttagtcatttgtagtagtatacatttttctgcatcttgtggcgataacgct  9625900                                                                                                    -                                                 --------->TOE2(3)                              -----                                             <------ZmHOX2a(1)                                  -----                                       --------->At4g35610                              <------ZmHOX2a(1)                            <---------YAB1 <---------TOE2(3)                          <---------TOE2(3) >GAMYB                ----------->GT1 <---------At4g35610 ---------->DOF2        --------->At4g35610 >DOF2  <---------ANAC46 ----------->GT1   <---------TOE1(3)                ---------->DOF2   -------   ctctatatttctgtgtatatatacaaggtgataaatgtatgagctaaggaaacttaattttcaaaggaaacttagtttgaaaggagcttaggatgccaaa  9626000  Previous    Next  AGI:  At2g22630.1    Description:  AGL17 (AGAMOUS-LIKE 17); transcription factor. Identical to Agamous-like MADS-box protein AGL17 (AGL17) [Arabidopsis Thaliana] (GB:Q38840;GB:Q9ZQ50); similar to AGL21 (AGAMOUS-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT4G37940.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61572.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) Range:  from: 9625452    to: 9629037    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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