Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                    <---------ANAC46                                                  <---------ANAC58        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <---------ANAC58                                  <      --------->ARR14(2)                         ---------->ID1                                   ---      <---------ARR14(2)               <-----------GT1             --------->HSFB2a(2)    <---------GLK1(2)  <---------LBD16<---------CCA1(2)     ---------->ID1              <---------HSFB2a(2)<---------At4g35610  --------->At4g35610                 <-----------GT1      <---------GLK1(1) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------At4g35610    <----------DOF2      <----------DOF2  <----------DOF2  xxxxxxxxxxxxxxxxxxxxx -----DOF2      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   <--   ttgcagcggaattggcttcatatcgttctttagtttgttttttcccttcttttcgtattagatttctttctcgtagttctaatactcgagcagattgttt  9537200                                                       xxxxxxxxxxxxxxxx>smallRNA(i)                --                                                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <-                                                      ------>ZmHOX2a(1)               --------->LBD16                                                     --------->TOE2(3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                                  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  xxxxxxxxxxxx                                             xxxxxxxxxxxxxxxxxxx>smallRNA(le3)       <---------HSFB2a(2)                                          <<<<<<<<<<<<<<<<<LFY           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <-----------ARR10   <-                                        --------->ANAC58  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(s2)    <---                                        --------->ANAC58 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)   xxxx                                        xxxxxxxxxxxxxxxxxxx>smallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(l2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                               <-----------GT1  <---------MYB46(3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                --------->ANAC58      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)----------->ARR10 ---------                --------->ANAC58<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)       <---------ZAT2         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)    <---------ANAC46  <xxxxxxxxxxx    ---------->DOF2         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)     <---------LBD16--------->HSFB2a(2) xxxxxxxxxxxxxxxx>smallRNA(i) <-----------GT1<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <---------TOE1(2) <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxx ------>At4g35610         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xx>smallRNA(si3)         <----------DOF2<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) -------At4g35610        <---------DAG2xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxxxxxxxxxxsmallRNA(i)   agctaagaaagctcgggctcgcaatagccttttttcccatgtaagcacattggttcctaaatggctctctctagcggagagtctcttcccgataacttaa  9537300       <---------MYB46(3) ------->AHL20(2) --------AHL20(2) xxxxxxxxxxx>smallRNA(si3) --------YAB1                          <-----------ARR10 ------------AGL15                     <---------ARR11(3) xxxxxxxxxxxxxxxxxxx>smallRNA(si3)     --------->GLK1(2) >TOE2(3)                              --------->ARR11(3)                                         <-- xxxxxxxxxxxxsmallRNA(se3)       ----------->RAV1(1)                                        --------- xxx>smallRNA(l2)         --------->AHL20(2)               <---------YAB1             --------->AHL20(2) xxxxxxxxxxxx>smallRNA(si3)     <----------ID1     <-----------GT1           <---------YAB1--------->AHL20(2)   tataaatggtgtttgaagaaaaaaaaaaaaaaatgcaacaaaatctactcgattttctattttgatacaatgctccattcttataaaaaaaaataaaaga  9537400                                                                                                 ----                                                                                                -----                                                                                                <----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                                -----                                                                                               ------                                                --------->YAB1                                 <-----                                       <---------YAB1                                         <------              ----------->GT1        <---------ICU4                      --------->TOE2(3)--------->ANAC58              <---------ANAC46      <---------ATHB12                    --------->ANAC58  --------->ANAC58             --------->DAG2   ----------->GT1  <---------ATHB12         ----------->GT1--------->WRKY18(1)    ----------->GT1      <------MYB46(1)     --------->WOX13(1)         --------->ANAC58<---------WRKY38(1) ----ZmHOX2a(1) ----------->GT1     --------->ICU4                      <---------ANAC55(2) <-------- ->DOF2---------->DOF2   <------MYB83--------->YAB1        <---------ANAC46           <-----------HVH21   ggaaaactgtaaagtaaggtgtaaatttggtgaagaaaatcattatccaatcaaaaacgttttgtgtaatagaaacgtaaataaaacgagtcaaggcacc  9537500                                                                                        -------------                                                                                        <------------                                                                                       <-------------                                                                                       --------------                                                                                       --------------                                                                                       <-------------                                                                                       --------------                                                                                       --------------                                                                                       --------------                                                                                       <-------------                                                                               ------->PIF5                                                                               <-------MYC2                                                                               ------->MYC2                                                                               ------->MYC3                                                                               <-------PIF5                                                                        --------->SPL7 <-------------        <---------ARR11(3)                                             <---------MYB52(1) ------->RAV1(1)                                                       <---------ARR14(2) ---->At1g77200                     ------>MYB46(1)                    --------->ARR14(2) -----ETT(1)                        ------>MYB83                      <---------SPL7   <------------- ---->DEAR4(1)                    <---------MYB111(1)               <------NtERF2     <-------------- ------>HVH21                     <---------MYB46(2)              --------->ANAC46<---------ANAC58 ---->DREB2C(2)                   <---------MYB59                 --------->DEAR3(1) ================ ---->DEAR3(1)       <---------GLK1(1)  --------->ANAC46          <---------DEAR3(1) -------->P --->DEAR3(2)       <---------ARR14(2)  --------->ANAC58       --------->ANAC46<-------MYC3 -NtERF2--------->ARR11(3)       --------->ANAC46          ------>ZmHOX2a(1)<------------OsbHLH66 ---ATERF1(1)       --------->ARR14(2)  --------->ANAC58  --------->TOE2(3)<---------At4g35610 ------ -ABI4(2) ------>ZmHOX2a(2) <-----------GT1        ------------>CBF------>NtERF2  <---------ANAC58   gacacaagatgatctcaatggggatttgtgtttccacctaatacgacatcgtattcaattcctaaacgacgccgttccgctcgtgcttacccataaatgg  9537600                           --------->ANAC58                           *TSS                           --------->ANAC58                          <---------ZAT18                         <---------ALFIN1                        --------->At4g35610                        <---------At4g35610                    <-----------HVH21                    <-----------TGA1                   --------->bZIP60(1)                   <---------TGA1a                   <---------O2                   --------->ANAC58   --------->ARR11(3) <-----------bZIP910(2)   <---------ARR11(3)--------->TGA2(2)  --------->RVE1(1)--------->O2  --------->CCA1(1)--------->ANAC46                                            --------->MYB55(2) -->AGL15          --------->bZIP60(2)                                         <---------MYB46(3) ---AGL15          --------->TGA1a                                            --------->ALFIN1 ----AGL3          --------->ANAC58                                           <---------DEAR3(1) --->AGL3          <<<<<<<<<<AtbZIP1                                          <---------AtMYB61 --->AGL2          <---------bZIP60(1)                                       <------NtERF2 ----AGL2        <---------ALFIN1                                           <---------MYB46(3) --->AGL1      <-----------HVH21                                           <---------DREB2C(2) ->AGL15      ------->GAMYB--------->ANAC46                                --------->ALFIN1 --->AG       ===============MYC_MYB                                       <---------DEAR3(1) ----AG      ================MYC_MYB        --------->LBD16             --------->ANAC46 ----AGL1    <------------AtMYB77          --------->DEAR3(1)           <---------DEAR3(1) --AGL15     --------->MYB46(3)           <---------LBD16              <---------LBD16 ---AGL1    <---------At4g35610       --------->ARR11(3)        --------->ARR11(3) ============================MYC_MYB --------->RVE1(1)         --------->YAB1<-------GAMYB ----->GT1  --------->At4g35610  --------->AHL20(2)      --------->ANAC46 <---------ABI4(1)     <----   aaaaatatctatacaactgccacgtcagcacaccaaaaaatatcaccggcgaaaaacacacacagtgatattctacggcggtggttcagtctcttcgaag  9537700                                    --------->ATERF1(1)                                   <-----------HVH21                                  <---------bZIP60(1)                                  <---------ANAC58                                  <---------ANAC46                      <---------ANAC58                                  <---------ANAC58           --------->ANAC46                                  --------->bZIP60(1)        --------->ANAC58   <---------MYB52(1)                                  <---------bZIP60(2)        --------->ANAC58  --------->LBD16                                  <---------DEAR3(1)      ----------->HVH21   --------->LBD16                       --------->LBD16            <---------MYB52(1)    <---------ANAC58    <---------CCA1(2)  ----------->GT1         <---------LBD16     <----------DOF2   --------->YAB1 -----ZAT2           <---------LBD16<------NtERF2--------->LBD16------->TEIL <---------LBD16   ctcgtcgtctctctcttcaaaactccggtgaaaatggcgtcgcttactctccggtgcgattcgacgcatcttttgccttcccggtaatcaaattgaattg  9537800                                                                                   --------->ATHB12                                                                                  <---------YAB1                                             ------>ZmHOX2a(2)                <---------ANAC58                                            <------ZmHOX2a(2)                 <---------ANAC46                                           <---------AGP1                     <---------ANAC58                                           --------->AGP1                 <---------MYB52(1)                                           --------->ARR11(3)           <---------ANAC55(1)                                           <---------ARR11(3)           <---------ANAC58                                           --------->ARR14(2)           <---------ANAC46                                           <---------ARR14(2)           <---------ANAC55(2)                                         ----------->ARR10              <---------ANAC58                                     --------->ATHB12                   <---------YAB1            <-----------GT1         <---------YAB1  <---------YAB1    <-----------GT1   tatttctctctgtttcactgaatttgaattgatagtttttgattagatctgtttatcattcggaatttgaaattacgtttgcttatgattcgattttgga  9537900                         --------->MYB59                         <---------TOE1(3)                         <---------TOE2(3)                     ------->TEIL       <-----------RAV1(1)             --------->ARR11(3)     <-------GAMYB             <---------ARR11(3)    <---------MYB46(3)                        <----------ID1       ---            <---------CCA1(2)  <---------YAB1                         <-----------HVH21           <--   ttcaattgaaacacatatctatgtatttaggttttgatggttatgttgtcttcatgggtttttcagtgatgttgtcaagggaacaaaaccatttggaacg  9538000                <------ZmHOX2a(2)               --------->ARR11(3)               <---------ARR11(3)              --------->YAB1           ------>ZmHOX2a(1)          --------->TOE1(2)          --------->TOE2(2)       <---------ARR14(2)       --------->ARR14(2)       ------->TEIL      <---------CCA1(2)  <------MYB46(1)--------->YAB1                                                                    <-  <---------ANAC46          ----------->GT1                                     =====================  <------MYB83<------ZmHOX2a(1)                                 <------ZmHOX2a(1)               <---- ------>ZAT2<---------TOE2(2)     <---------TOE1(3)         <------ZmHOX2a(1)   --------------->AGL15 -------ZAT2<---------TOE1(2)     <---------TOE2(3)   ----------->RAV1(2)       <---------------AGL15   agcttggtgtatcctaggatcatatcgaagaagtttaatgttagaatgagagtgatacctgaggaaggagatgtgttctcttcttctaagagtaatggat  9538100  Previous    Next  AGI:  At2g22450.1    Description:  riboflavin biosynthesis protein, putative. similar to ATGCH (ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II), 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II [Arabidopsis thaliana] (TAIR:AT5G64300.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43134.1); contains InterPro domain 3,4-Dihydroxy-2-butanone 4-phosphate synthase; (InterPro:IPR000422); contains InterPro domain GTP cyclohydrolase II/3, 4-dihydroxy-2-butanone 4-phosphate synthase (InterPro:IPR016299); contains InterPro domain GTP cyclohydrolase II; (InterPro:IPR000926) Range:  from: 9537627    to: 9539994    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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