Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                <------                                                                    <---------YAB1          <--------                                                                    --------->ICU4          ---------                                                                   --------->TOE2(3)        -------->HAHB4                                                                  <--------HAHB4           --------->ICU4         <---------AHL20(2)                           --------->ARR11(3)              --------->TOE2(3)     <------MYB83                                     ------->TEIL--------->YAB1      --------->YAB1     <------MYB46(1)                                 <---------CCA1(2)   ---------->DOF2   <---------ATHB51     ----------->GT1                             <---------ANAC58 <---------ICU4    --------->ARR11(3)    <---------TOE2(3)                            <---------ANAC58 --------->ATHB12  <---------ARR11(3)    --------->MYB59  <---------MYB46(3)          <---------ANAC46<---------YAB1    --------->GLK1(1) --------->ARR10     ----------->GT1     <---------TOE2(3)     --------->YAB1      <---------GLK1(1)   tgagattaggtttaattgtagagttgttaatagaaggcctattgatgtattgcttgtatcttgaattatcattagtaaagagaagaaatcttaattatga  9521600                             --------->ANAC58                             --------->ANAC46                             --------->ANAC58                       <---------At4g35610                       --------->At4g35610                 <----------DOF2              <---------ARR11(3)              <-----------ARR10      ------->TEIL              <---------ARR11(1)     <---------AGP1              --------->GLK1(2)      --------->ARR11(3)              --------->ARR11(3)     --------->ARR14(2)              <---------ARR14(2)     <---------ARR11(3) ---YAB1      --------->ARR14(2)     <---------ARR14(2) -ICU4       <---------CCA1(2)      <---------CCA1(2)  <----------DOF2         <-----------HVH21 ---- >YAB1   --------->AtLEC2 <-------TEIL ------>ZmHOX2a(2)              <---------YAB1    ---------->DOF2   cttctaaattgatgcaaatctttttagctacatgccatggatcttggttctccaaaactttgattttggtttatgaatactggtcactgctaaagctaca  9521700                             --------->TOE2(3)                            <---------ICU4                  <---------AHL20(2)      --------->ANAC58      --------->YAB1      <---------MYB46(3)      --------->ANAC58     --------->ICU4  --------->ZAT14  <-----------HVH21   ----------->GT1      <---------ZAT14         <---------ATHB51           <------ ----->GLK1(2)   --------->AHL20(2)   <---------ATHB12     <---------ATHB12            ----------->RAV1(1)   atctggtcacaccagtctataaaatagtaaacattatctaatcactgaagttgttgtcccaataaacaaattatggactggacaagtagcaacattctaa  9521800                                                                                       <-------------                                                                                       <---------TOE2(3)                                                                                      ---------->DOF2                                                                                     <---------ICU4                                                                                  <---------ICU4                                                                                 <---------AHL20(2)            ---------->DOF2                                                      --------->ICU4         --------->ANAC58           <---------ANAC46                             <---------ATHB51         --------->ANAC58           <---------ANAC58   <---------ARR14(2)        --------->AHL20(2)      <-------TEIL                  <---------ANAC58   --------->GLK1(2)<---------ARR11(3)  <---------------AtSPL8       <---------ICU4          --------->ARR14(2)  <---------HSFB2a(2)  <---------TOE2(3)           --------->ICU4          <---------GLK1(2) --------->GLK1(2) <---------------------WRI1--------->AHL20(2)<---------TOE2(3)          --------->ARR11(3)     ------ ---YAB1 --------->ANAC46----------->GT1     <---------TOE1(3)         <---------GLK1(2)   <-------TEIL   ttctgaggtacacacaaagaaacttaaatgtaaatattccttgtttcaaggtttcagaatttgcacatatacaaaatctcgaaataattaaggcacatta  9521900        <-----------HVH21      <---------DEAR3(2)      <---------MYB46(3)     <---------DEAR3(1)                       <---------LBD16   --------->MYB52(1)                    <---------DAG2  ------->GAMYB--------->LBD16           <----------DOF2  --------->DEAR3(1)                  <---------ALFIN1 --------->MYB46(3)                  <---------ZAT18 --------->DEAR3(2)           ----------->HVH21             <-----------GT1    <---------At4g35610 --AtSPL8<-------TEIL       <---------At4g35610        <----------DOF2         --------->At4g35610  < --->AHL20(2)<---------LBD16--------->At4g35610 --------->LBD16  <---------GLK1(2)  <---------YAB1  -   aaaaccgccggttcacccggttatagagtaatctgaccgtccactttatccggtttacttttaaaccgattttgtggtcttagctcataaatgtcaagag  9522000                                                   <------ZmHOX2a(2)                *TSS                    <-------TEIL             <---------------AGL15     --------->GLK1(2)       <---------TOE2(3)        <---------GLK1(2)            <-----------------AGL1    <---------ARR14(2)     ---------->DOF2            --------->ARR14(2)    <----------DOF2                   <---------GLK1(2)  ------>ZmHOX2a(2)    <---------TOE2(3) <---- ----------DOF2<------------CBF       --------->ARR14(2)<------ZmHOX2a(2)  --------->ICU4--------->GLK1(2) ----->ZmHOX2a(1)        --------->GLK1(2)       <---------GLK1(1)     <---------ZAT18  <---------ARR14(2)   tcctttcttttcttccccattgttgaaaatcaggtttacagattcagtgagagatcagatcgctaaaggtttgtgcaattagggttctcagattctctct  9522100                                                                                                   --                                                                                                  <--                                                                                                 <---                                                                                                 ----                                                                                                 ----                                                                                                 ----                                                                                                 <---                                                                                                 <---                                                                                                 <---                                                                                         ----------->HVH21                                                                                       --------->At4g35610                                                                                       <---------At4g35610                                                                                       ----------->RAV1(2)                                                                                       <---------ZAT2                                                                             ======================RAV                                                                             ====================RAV                                                                          --------->GLK1(2)      <---                                                                         <---------GLK1(2)--------->At4g35610                                                                    <------ZmHOX2a(1)  --------->ZAT2                                                                    =================================                                                                  --------->ANAC58   <-----------RAV1(2)       <----------DOF2                      <---------ANAC46      --------->ANAC58  <---------At4g35610    <-----------GT1                      <---------MYB52(1) <---------WOX13(1)  --------->ALFIN1 ---- ------DOF2                             <-------GAMYB      --------->ARR14(2)<-----------RAV1(1)<----   tttgtttaactttggattcaaatcgctaatggtttttgatttcgttgtgtagaagaaaatggattggcaaggacagaaactggtggagcagctgatgcag  9522200          <---------GLK1(1)          --------->GLK1(1)         --------->ARR11(3)         <---------ARR11(3)                                                           <---------ANAC46 ---->ZmHOX2a(2)                --------->MYB111(2)                                --------->ALFIN1 ----ZmHOX2a(2)                 --------->MYB55(2)                                 <---------AtMYB61 ------ARR14(2)              --------->MYB52(2)                                    <---------DEAR3(1) ----->ARR14(3)              <---------MYB46(3)  <---------ARR14(2)               <---------MYB52(1) ----->ARR14(2)     <---------REM1(1)            <---------GLK1(2)               --------->LBD16 ----->AGP1   <---------DEAR3(1)--------->MYB111(1)                             <---------DEAR3(1) --------ARR10--------->ANAC46  <---------MYB46(3)         ======================HOX2a_HOX2a ------ARR14(3)   <-------GAMYB<--------P--------->ANAC46  <------ZmHOX2a(1)    <---------DREB2C(2) ------ARR11(3)------>NtERF2 --------->MYB55(2)  --------->ARR14(2)             <---------ATERF1(2) ------AGP1------>ZmHOX2a(2)<---------AtMYB61  ------->GAMYB                   <---------LBD16 ====HOX2a_HOX2a <---------ANAC46<-------GAMYB--------->ANAC58            ------>ZmHOX2a(2) ----->ARR11(3)--------->LBD16<-------GAMYB   --------->ANAC58          <-----------ARR10        ---- -----CCA1(2)<---------LBD16--------->ALFIN1--------->MYB52(1)      <---------At4g35610          ----   atcttactggtgatctccggcgttgtagcggtggttgttggctacacaacggaatcgttcaggacgatgatgctgatctatgccggtggtgttgttctca  9522300                                                           ------>ZmHOX2a(2)                   <---------WOX13(1)                     --------->CCA1(2)                 ------>MYB83                             <------ZmHOX2a(2)               <---------MYB111(1)                       <---------ARR14(2)               <---------MYB46(2)                        --------->ARR14(2)               <---------MYB59                           --------->AGP1     <---------HSFC1(2)         --------------->AtSPL8                        ----------->ARR10    --------->HSFB2a(1)         --------------->AtSPL3            =======================HOX2a_HOX2a   xxxxxxxxxxxxxxxxxxxxx    <---------MYB46(3)       <-----------GT1           --------->MYB59      --------->HSFC1(2) <----------DOF2 ------>MYB46(1)           ======================HOX2a_HOX2a<---------HSFB2a(1)     - ----->ANAC58------->TEIL<----------DOF2   ------>ZmHOX2a(1)               --------->ANAC58         < ----->ANAC58<-----------------AGL1--------->YAB1  ----------->GT1         --------->ANAC58    <-----   cgactttggttactgtacctaattggcctttctacaatcttcatcctctcaaatggttagatccgagcgaagccgagaagcatcccaaaccagaagttgt  9522400             <---------------------WRI1     <---------ANAC58     <---------ANAC58     <---------ANAC46                                                                            <--- xxx>smallRNA(le3)                            ------->TEIL                                       <--- -------->ALFIN1                             <---------GLK1(2)                                  ----- -----------RAV1(1)--------->GLK1(2)       <---------YAB1                             <---------ANAC46 ------HVH21 >>>>>>>>>TBF1             <---------GLK1(2)                      --------->YAB1    <----   cagtgttgcttcgaagaagaaattctctaagaaataggtctgattctgaatctctctctctctctctctctctctctctctcagaattgtttgtatgaga  9522500  Previous    Next  AGI:  At2g22420.1    Description:  peroxidase 17 (PER17) (P17). Identical to Peroxidase 17 precursor (PER17) [Arabidopsis Thaliana] (GB:Q9SJZ2;GB:P93725); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT2G18150.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO45517.1); contains InterPro domain Plant peroxidase; (InterPro:IPR000823); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) Range:  from: 9520299    to: 9521615    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g22425.1    Description:  signal peptidase. Identical to Probable signal peptidase complex subunit 1 [Arabidopsis Thaliana] (GB:Q944J0;GB:Q7G9Y5); similar to signal peptidase [Arabidopsis thaliana] (TAIR:AT4G40042.1); similar to Microsomal signal peptidase 12 kDa subunit family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98316.2); similar to hypothetical protein OsI_036933 [Oryza sativa (indica cultivar-group)] (GB:EAY82974.1); similar to hypothetical protein OsJ_034565 [Oryza sativa (japonica cultivar-group)] (GB:EAZ20356.1); contains InterPro domain Microsomal signal peptidase 12 kDa subunit; (InterPro:IPR009542) Range:  from: 9522016    to: 9522615    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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