Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->At4g35610          ---------->DOF2        --------->ANAC58                                                                     --------        --------->ANAC46                                                                     <-------        --------->ANAC58--------->YAB1                                                       -------- ---->ANAC46     <---------At4g35610                                                         ------>ZmHOX2a(1) ---->ANAC58     --------->ZAT18       ---------->DOF2                                      <-------- ---->ANAC58--------->DAG2 ---------->DOF2         <-------TEIL               ------->TEIL ----------   gcaattgttcacgaaagggagcacaaaaataaagagcctgcaaaagagaaaggttcatcaaacaaattagtctatggatgaaacttgttcaactcctgga  9485600                                            ------->GAMYB                                          --------->ANAC58                                          -------->P                                          --------->ANAC58                                         ------->GAMYB    <---------ZAT18                     <---------MYB111(2)    --------->ZAT18                     <---------MYB55(2)    -------->P    --------->ZAT14                     --------->MYB46(3) --------->At4g35610    <---------ZAT14                 XXXXXXXXXXXXXXXXXXXX>MIR852 <---------ALFIN1 ->HSFB2a(2)                        ======================HOX2a_HOX2a --HSFB2a(2)                        <------ZmHOX2a(2)     --------->ANAC46 ->LBD16                           <---------ARR11(3)     --------->ANAC58                        --- -LBD16                            --------->ARR11(3)     --------->ANAC58     <----------DOF2    --- ->RAV1(2) --------->YAB1     --------->TOE1(2)    ------>ZmHOX2a(1)       <-----------GT1        ---   gacttgtgcacaaacatagaatgcaaaacagacctaagatcaacaacccagtcctgccataagctaccacatctataaaaccttttaagaactgatacac  9485700                                                             --------->AtLEC2                                                        <----------ID1                                                        --------->ANAC58          <---------------AGL15                         --------->ANAC58          --------------->AGL15                         --------->ANAC46       <---------AHL20(2)                        --------->ANAC58 ------>ANAC58                   <---------ATHB12--------->ANAC58                     --------->AtLEC2 ------>ANAC58         <---------DAG2          ---------->DOF2               <------ZmHOX2a(1) ------>ANAC46      <-----------GT1          <---------HSFB2a(2)         --------->ICU4   actctacatttacttaaaaatgaaaccttttgtcaataaatctaattccaaaagcaaaacgacatggaaactgaaatgaggactcgacctgcaaaacact  9485800                                                                                                    <                                                                                                 <---                                                                                                -----                                                                                              <------                                                                                              <------NtERF2                                                                                              ------>NtERF2                                                                                              -------                                                                <------NtERF2                <-------                                                              <---------DEAR3(1)             <-------                                                            <-----------HVH21                --------                                                    --------->HSFB2a(2)                     ---------                                                    --------->LBD16                         <------NtERF2                                                    <---------HSFB2a(2)                    ------>NtERF2                                                   <---------ANAC46                        <---------ATERF1(1)                                                   --------->HSFB2a(2)                     <---------                                                   <---------LBD16                        --------->DEAR3(1)                                                   <---------HSFB2a(2)  <----------DOF2   --------->ANAC46                                                  <---------LBD16    <---------ARR11(3)   <---------ALFIN1           <-----------RAV1(1)                  ------>ZmHOX2a(1)--------->DEAR3(1)      <---------LBD16           --------->ALFIN1         <---------HSFC1(2) --------->ARR14(2)               <---------ATERF1(1)  ----------->GT1                   --------->HSFC1(2) <---------ARR14(2)   --------->HSFB2a(2)------ --------->ZAT6   <---------RAP2.6(3)       <-----------------AGL1------>NtERF2        --------->PCF2   gttacagtaacaagtgttgccgaaattttcgaaaccgaagtatcgttctccttccgggaactggtcgccgagagctttctcgagtttggaccccgccgcg  9485900                                                             --------->GLK1(1)  --------->MYB46(3)                                 --------->GLK1(2) -----------HVH21        <---------MYB52(1)         <---------ARR11(3) ---NtERF2               --------->DOF5.7(2)        <---------ARR14(2) ->NtERF2               --------->TOE2(3)           --------->ARR14(2) ---ATERF1(1)           --------->At5g28300         <---------GLK1(2) -->ABI4(1)            ----------->GT1              --------->ARR11(3) --ALFIN1           <---------ALFIN1               --------->HSFC1(2) --ATERF1(1)      --------->SPL7                   --------->HSFB2a(1)                          >>>>> ->DEAR3(1)      ----------->HVH21                 <---------HSFC1(2)                        >>>>>>>> >ATERF1(1)     --------->LBD16 <---------ANAC58   <---------HSFB2a(1)                    >>>>>>>>>TBF1 --HVH21       --------->ANAC55(2)            --------->ANAC46                    <---------ANAC46 --->DEAR3(1)  --------->ANAC46 <---------ANAC58  ----------->ARR10   --------->ALFIN1 >>>>>>>>>TBF1   cccatcagccctagcctccgtaacaccgttaatttcgttccgattcacacagaagattctcagatttcgaaagtgttgaaattggcgaagaagaagaaga  9486000                                                                                                  <--                                          --------->AHL20(2)                                      ---                                       <---------AHL20(1)                                         ---                                       *TSS --------->MYB52(1)                                    <--                                       --------->AHL20(1)                                        <---                                       --------->AHL20(2)                                        ----                                       <---------AHL20(2)                                     <------                                    --------->YAB1                                        <---------ICU4   <------ZmHOX2a(2)               <---------YAB1                                        <---------YAB1   =============================HOX2a_HOX2a<---------AHL20(2)                            --------->ICU4  <---------ARR11(3)               --------->ICU4                             ----------->GT1--------  --------->ARR11(3)             --------->YAB1                       ---------->DOF2  --------->YAB1 >>>>TBF1                  --------->HSFB2a(2)                     <---------AHL20(2) <---------YAB1 >TBF1                   ------>ZmHOX2a(1)<---------AHL20(2)<-----------GT1  --------->ICU4  <-------   agaagatcgatactgaaatttctgttcctcgcgaataataataaattaatggaacttgtgtttgactattttaaaaggaaagattaatatgataattaaa  9486100       ------>ZmHOX2a(1) -------AHL20(1) ------>AHL20(1) ------>AHL20(2)                                                             <---------AHL20(2) -------AHL20(2)                                                            <---------AHL20(2) ------AHL20(2)                                                   <---------YAB1          <----------DOF2 ----->AHL20(2)                    <-----------GT1             <---------AHL20(1)        <---------ANAC58 ---AHL20(2)     --------------->AGL15          <---------YAB1 <---------AHL20(2)        <---------ANAC58 ->AHL20(2)      <---------------AGL15--------->TOE2(3)        --------->AHL20(2)        <---------ANAC46 --AHL20(2)   <-----------GT1  <---------AHL20(2)    --------->AHL20(2)     --------->AHL20(2)    ---   taaattatcctctatttttctgtatttagcgatttttttacatcaaaactatgaattaaactcattttatttttgaaattaaataagtttggcttgtatg  9486200                                                                                                   <-                                                                                                   <-                                                                                                   --                                                                          <---------AHL20(2)       <-                                                                          --------->AHL20(2)       --                                                                       --------->AHL20(1)          --                                                                       <---------AHL20(1)         ---                   >>>>>>>>>CBP60g                               --------->ANAC58                 <--      <---------AHL20(2)                                         --------->ANAC58                 ---     --------->AHL20(2)      --------->MYB59   <----------DOF2   --------->ANAC46                 <-- -------->GT1      >>>>>>>>>SARD1 ---------->DOF2    <-----------HVH21--------->AHL20(2)      -------   aagtttataaaatgaattgaaatttggaagttagataaaagtcaattttctttcatgtcaatgcttcaagaaatatataatttcatctagctctaagtta  9486300                           --------->AHL20(1)                           <---------AHL20(1)          --------->AHL20(2)    <---------YAB1        <---------AHL20(2)  <---------ICU4        --------->AHL20(2)  -------->HAHB4        <---------AHL20(2) --------->ICU4       <---------AHL20(2) -------ATHB1         --------->AHL20(2) -------HAHB4       --------->AHL20(2) ------->ATHB51     <---------AHL20(2) --------ICU4     <---------AHL20(2) ------>HAHB4     --------->AHL20(2)                                                 --------->TOE1(3) ------->YAB1   <---------AHL20(2)            <-----------RAV1(1)          <---------ANAC58 ------>AHL20(2)--------->AHL20(2)            --------->ALFIN1             >>>>>>>>>>WRKY18 -------ATHB51<---------AHL20(2)      >>>>>>>>>>GT-3b                      <---------ANAC58 ------>ICU4  --------->AHL20(2)   --------->ANAC58                    <---------WOX13(1)  <---------AHL20(2) -------YAB1--------->AHL20(2)     --------->ANAC46                 <---------YAB1 -------->P<------- -->AHL20(2)<---------AHL20(2)     --------->ANAC58                 <---------TOE2(3)--------->TOE2(3)   ataattatgcatatatatatatatatatatatattacaagaaaaatatgtgttggagaatgccaagtcttaagattgacttgactaaccttaatttatct  9486400                                                                                                  <--                                                          --------->YAB1                      -------                  <-----------GT1                        <---------ATHB12                    --------          <----------DOF2                               ------>MYB46(1)                      <-------      <-----------GT1                                   ------>MYB83                       --------->YAB1 ----GT1 <---------DAG2        ---------->ID1      <-----------GT1                        --------->ICU4   acttagttttacctttttttaaaccatatttttgtcttcaagttttttttttttcaccaatcttcaagtgttttggattgtaatgttatggaataataat  9486500  Previous    Next  AGI:  At2g22310.1    Description:  ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 4 (UBP4) [Arabidopsis Thaliana] (GB:Q8LAM0;GB:O24455); similar to ATUBP3 (UBIQUITIN-SPECIFIC PROTEASE 3), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT4G39910.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67091.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43342.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) Range:  from: 9483658    to: 9486039    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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