Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                   <---------YAB1                                                          ---------->DOF2                <---------At4g35610                                                  --------->ARR14(2)                     --------->At4g35610                                        ------>MYB46(1)--------->At4g35610             <---------WRKY38(1)    --------->TOE2(3)                   ------>MYB83------>ZmHOX2a(2)  <---------YAB1  <---------WRKY12  --------->GLK1(2)           ------->TEIL        <---------ARR14(2)<---------YAB1    <<<<<<<<<<WRKY11 ------->ARR11(3)      --------->ARR11(3)    <---------ANAC46  ----------->GT1 --------->AHL20(2) --------ARR11(3)    --------->DAG2   <---------MYB59  <---------At4g35610     <---------AHL20(2) -->WRKY18(1)      ---------->DOF2----------->HVH21<------ZmHOX2a(2)--------->ICU4    <<<<<<<<<<WRKY6   agataatctaaaacaatgctaaaaaggtcatgaaccctgacctaattttgtggatccagctaaagatgtgattattttttataaattagtcaactggaac  9456700                                                                                                 <---                                                                                 <---------AHL20(2)<-              ------>NtERF2                                             ----------->HVH21   <------MYB83      --------->ARR14(2)       <---------MYB52(1)                  --------->GLK1(2)        <--------      <---------ARR14(2)      <----------DOF2               ----------->GT1 <----------DOF2 <------MYB46(1)   <-----------------AGL1  ------->TEIL                     --------->YAB1  <---------DAG2 --------->MYB59   aaatttcatatactggcacctagtctatgtgcctttggttatgcacaaatgcaactctaaaatcgtaaaaatcggtgactttttaaaatgagtttggtta  9456800                                                                              ---------->DOF2                                                                        ----------->GT1                                             =====================================MADS_MADS                                            --------->HSFB2a(2)         <----------ID1            <xx                                            <---------HSFB2a(2) ----------------->AGL2          <xxxx                                           =======================================MADS_MADS    <xxxxx                                           ----------------->AGL3--------------->AGL15       <xxxxxxx                                       --------->MYB52(2)       ----------------->AGL3     <---------ARR14(2)                                       <---------MYB46(3)      ------------------------>ANAC81<xxxxxx   ----------->ARR10         <---------WRKY12<---------------AGL15    ---------->DOF2      <xxxxxxxxx ------At4g35610             <---------WRKY38(1)              <------ZmHOX2a(1)         ------------- --------MYB46(3) ---------->DOF2--------->TOE2(3) --------->DAG2<---------------AGL15  <------------ -MYB46(3)  <-------TEIL    --------->WRKY18(1)  ---------->DOF2----------------->AGL1  <---------ANAC46   gcggttcgattcggttcatcaaaaggaacagtcaaccttgtttgttccaaaaaaaggctacgaaggaccaaaaaaagaaaaaaagaaatggcctatacag  9456900                                                         <---------ZAT18                                                       --------->ANAC46                                                <---------At4g35610                                                --------->At4g35610                                               <xxxxxxxxxxxxxxxsmallRNA(si3)                                               <xxxxxxxxxxxxxxxsmallRNA(fl3)                                               <xxxxxxxxxxxxxxxsmallRNA(le3)                                               <xxxxxxxxxxxxxxxsmallRNA(se3)                                              <xxxxxxxxxxxxxxxxsmallRNA(se3)                                              <xxxxxxxxxxxxxxxxsmallRNA(fl3)                                              <xxxxxxxxxxxxxxxxsmallRNA(s)                                              <xxxxxxxxxxxxxxxxsmallRNA(i)                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                            <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                            <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                            <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                           ------>MYB83--------->ANAC58                                           ------>MYB46(1)                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                           ----------->RAV1(2)                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                           <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                           <xxxxxxxxxxxxxxxsmallRNA(le3)                                          --------->MYB52(1)                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                          <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                         <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)         ----------->HVH21               <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <-----------HVH21                <xxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxsmallRNA(se3)     ------->GAMYB --------->ANAC58   >>>>>>>>>>>>>>>>>LFY      --------->TOE2(2)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)      --------->TOE1(2)                 <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)     ----------->RAV1(2)                --------->MYB46(3)          <------------CBF    ------->TEIL                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) ------>ZmHOX2a(2)                     <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxsmallRNA(se3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)             --------->AHL20(2) xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------AHL20(2) xxxxxxxxxxxsmallRNA(s)              <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)            --------->ARR11(3) xxxxxxxxxsmallRNA(s)                <xxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)            --------->AHL20(1) xxxxxxxxxxsmallRNA(s)       --------->ANAC58<xxxxxxxxxxxxxxxxxsmallRNA(fl3)            <---------AHL20(1) xxxxxxxsmallRNA(s)          --------->ANAC46<xxxxxxxxxxxxxxxxxsmallRNA(si3)            <---------ARR11(3) ---->AGL1                   --------->ANAC58<xxxxxxxxxxxxxxxxxsmallRNA(se3) <------------CBF      -- -----AGL1               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   *TSS<---------AHL20(2)  ------->TEIL --   ggatcgaacctgtgaccttcgcgttattagcacgacgctctaaccaactgagctaataggccacttgttatattgtttccattgtatgaatatattcaaa  9457000                                                                *TSS                                --------->ZAT6               ----------->RAV1(2)                              --------->MYB52(1)             <---------At4g35610                             ------->GAMYB                   --------->At4g35610                            --------->MYB46(3)           ------>ZmHOX2a(1)           <-----------GT1  <---------MYB52(2)      <---------At4g35610          ---------->ID1   <---------At4g35610      --------->At4g35610     ------->TEIL        --------->REM1(1)  <-----------GT1<---------ALFIN1 ------->TOE1(2)       <----------DOF2 --------->TOE2(3) <-----------HVH21          <---------GLK1(2) ------->TOE2(2)     --------->At4g35610--------------------->WRI1         <---------ARR11(3)--------   acctatgaatttgtcactatctctgcttcaactaacacaaacctttgtactctccgctccttcacctgcaaaaacaacatctctcacattctctctaaac  9457100                                                                                 --------->YAB1                                                                                 <---------ICU4                                                                              --------->YAB1                                                                              <---------ICU4                                                                             <---------YAB1                                                                           --------->YAB1                                                  <---------TOE1(2)        <---------ICU4              <<<<<<<<<<<<<<<<<LFY               ------>ZmHOX2a(1)        <---------YAB1       <-----------HVH21                        --------->TOE2(3)       <---------ICU4  --------->AtMYB61  --------->ZAT14                          <---------DAG2               --------->YAB1------->TEIL  <---------ZAT14                          <----------DOF2           --------->YAB1   -------->P ->ZAT14<---------MYB52(1)           --------------->AtSPL8         <-------TEIL<---------YAB1   tctcttcactgttactcgacaatggctactacttctaactcggtacttttcctaagttctgactcactgattcatcatcatcatcatcaacctctccatc  9457200            ------>ZmHOX2a(2)               <------ZmHOX2a(2)           --------->GLK1(1)           --------->ANAC58           <------ZmHOX2a(2)           --------->ANAC46          --------->AGP1               --------->ANAC58          <---------AGP1             ---------->DOF2          --------->ARR11(3)         --------->MYB46(3)          <---------ARR11(3)       ------>MYB83          --------->ARR14(2)       ------>MYB46(1)                                                  -          <---------ARR14(2)     <---------MYB55(2)                                               ---          <-----------ARR10      --------->MYB46(3)                                              ----         <---------CCA1(2)      --------->ANAC46                <---------MYB52(1)            -------       --------->HSFB2a(2)      --------->ANAC58         --------->ANAC58                   <--------     ==============HOX2a_HOX2a  --------->ANAC58         --------->ANAC58               --------->AtMYB61     =============HOX2a_HOX2a <---------ALFIN1           --------->ANAC46              --------->At4g35610     ------>ZmHOX2a(1)       --------->MYB46(3)       ----------->HVH21 --------->MYB46(3)  <--------   tatcttcctccagatctcactctgtttctctcccacccaacaagcgatccaattctctcacgcttcgttgttcaacaaatggcgatagcacctcaaccga  9457300           <---------ATHB12          ------>MYB46(1)          ------>MYB83        --------->AtMYB61 ---------->GT1                                            <-----------TGA1                       --- ------>DAG2             <---------GLK1(2)                --------->YAB1                          <-- ------>DOF2             --------->ARR11(3)              <-------TEIL                            <--- >GAMYB --------->MYB46(3)   <-----------GT1       --------->ANAC46                            ------ ---------AG             <---------ARR11(3)        <---------ETT(1)                          <------- ---------AGL1         ----------->ARR10    <---------TOE2(3)                                --------   aaaggaaacaccaatcgaactcagtaagatttttctctcgatttctaatgtttccgacattcgtcattctcttactcaatctgtttctcttaatccccag  9457400                                                                      --------->YAB1                                                                 <---------ARR11(3)                                                                 <---------AHL20(1)                                                                 --------->ARR11(3) ------>GLK1(1)                                          ----------->GT1 -------GLK1(1)  --------->At5g28300                    <---------TOE2(2) ------GLK1(2)  ------->GAMYB               <---------ARR11(3)   --------->AHL20(1) --->LBD16      --------->TOE2(3)           --------->ARR11(3)--------->AHL20(2) --LBD16     --------->MYB52(1)   ------>MYB46(1)       <---------TOE1(2) ->LBD16--------->GLK1(1)         ------>MYB83      ----------->HVH21<-------TEIL   <----------DOF2   aattcccagcatttccaacggtaatggacattaaccaaatcagagagatattgcctcacaggtataaaatattcataagacttcaactttcggtgatttg  9457500                                                                                   --------->At4g35610                                                                                   <---------At4g35610                                                                                   <---------ZAT2                                               <-----------GT1                    <-----------RAV1(1)                                       --------->HSFC1(1)                      <---------ARR14(2)                                       --------->HSFB2a(2)                     --------->ARR14(2)                                       <---------HSFB2a(2)                    <---------MYB52(1)                                      <---------LBD16                       <---------ANAC58                                   <----------DOF2                          <---------ANAC58                                --------->ARR11(3)    <---------YAB1 <---------TOE2(3)                 <---------TOE2(2)------>ZmHOX2a(2)   <---------TOE2(3) <---------GLK1(1)        <---       <-------GAMYB            <---------ARR11(3) --------->ICU4    <---------TOE1(3)  <--------P   atgagttttcgttgaaacccatgtttgaagttttgatctttctggaatttgacattatggttcttggattttaggtttccgtttctgctggtagatagag  9457600  Previous    Next  AGI:  At2g22220.1    Description:  pre-tRNA. tRNA-Ile (anticodon: AAT) Range:  from: 9456889    to: 9456962    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g22230.1    Description:  beta-hydroxyacyl-ACP dehydratase, putative. similar to beta-hydroxyacyl-ACP dehydratase, putative [Arabidopsis thaliana] (TAIR:AT5G10160.1); similar to 4D11_17 [Brassica rapa subsp. pekinensis] (GB:AAZ67531.1); contains InterPro domain Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; (InterPro:IPR010084); contains InterPro domain Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ (InterPro:IPR013114) Range:  from: 9457064    to: 9458702    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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