Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                   --------->YAB1         <-----------GT1   <------MYB46(1)   <---------MYB46(3)      --------->ANAC58                       ----------->GT1          <---------YAB1   <------MYB83 <---------YAB1        ----------->HVH21         ---------->DOF2          --------->YAB1 ----------RAV1(1)  --------->YAB1  --------->CCA1(2)   --------->At5g28300          <---------YAB1 -------YAB1<----------DOF2--------->ANAC58             <---------MYB52(1)   ---------->DOF2   attgttggtttatactttataatcgtattacgcccatgatatgacagtatatcgaaccggtaattggaaagttaattcccaaagaatacgattatactaa  9453000                                                                     <----------DOF2        --------->ATHB12      --------->ARR11(3)                  <---------ARR11(3)       <---------YAB1         <---------ARR11(3)      ----------->HVH21           ---------->DOF2    --------->ICU4        ---------->DOF2  <----------DOF2  ---------->DOF2 ----------->GT1  ---------->DOF2 <----------ID1 <----------DOF2<---------ZAT18   --------->ARR11(3)   gatgaaaagatgattgtagagagacaaaaaaagagctttgatgagctttgtgcccattgacacaaagagaactttagatggataaaaagaacgttttata  9453100                                                      <---------GLK1(1)                 --------->LBD16                           --------->ANAC58           --------->GLK1(1)                <---------ANAC58                           --------->ANAC58       <--------P                           <---------ANAC46                         ---------->DOF2          <---------WOX13(1)                   --------->ANAC55(2)              <----------ID1                     <-------GAMYB                         <---------ANAC58           ---------->DOF2--------->DAG2       <---------TOE2(3)          <-----------GT1----------->HVH21       <----------DOF2<----------ID1     --------->ATHB12              --------->ATHB12<---------ANAC55(2)  ---------->DOF2  ---------->DOF2  ------->TEIL<---------MYB46(3)     --------->YAB1  <---------ANAC55(1)   gagagaaagctttgaaagaacaaaaggaaaagcaattgaacgttgatttgtggttgatttccaatctctacattgattaccagtcaattccgtgacaaat  9453200                                                                        <-----------GT1                                                                  --------->YAB1                                                                 --------->ZAT6                                                               --------->YAB1                  --------->CCA1(2)       --------->LBD16     <---------YAB1                 --------->ARR11(3)      <---------ANAC46    <---------AHL20(2)               <---------TOE2(3)        <---------LBD16      --------->AHL20(2)               ----------->ARR10     <---------ANAC58        --------->AHL20(1)                     <    <---------------AGL15     <----------DOF2               --------->YAB1                      <---- <-----------GT1 <---------ARR11(3)  <---------ANAC58 --------->YAB1 --------->YAB1          <-------   ttgttactaaattggctaagatatgtgttctggtttaatgcttccgcataatagaataacaattataatactaataacatcatccatgtgagtatttttt  9453300                                                                          --------->AHL20(2)                                                                         <---------AHL20(1)                                                                         <---------AHL20(2)                                                         --------->AHL20(2)                                                <---------ANAC58      --------->AHL20(2)           --                                                <---------ANAC58      <---------AHL20(2)           --                                              <------MYB83           --------->YAB1    --------->ANAC55(2)         <----------DOF2                      <------MYB46(1)        *TSS--------->AHL20(1)        <-     <----------DOF2                         <---------AtMYB61 ----------->GT1<-----------GT1<------- <<<<<<<<TBF1                       --------->AtLEC2     <---------AHL20(2)<---------ICU4    -------- -------GT1                      ------>ZmHOX2a(2)----------->HVH21 <---------YAB1     <---------ANAC55(2) --AHL20(2)             --------->YAB1    <-----------RAV1(1) --------->AHL20(1)   <---------GLK1(2)   tcttcttctttcttttttttttggaatgaaaatgatccatgcgaatgttggtgtgacaaataaatatgttattaaaatatttacagattatgtgatttat  9453400      <---------AHL20(2)                                                          --------->ANAC55(2)     --------->AHL20(1)                                                      --------->O2     --------->AHL20(2)                                                      --------->ANAC55(2)     <---------AHL20(2)                                                      --------->ANAC58       -     <---------AHL20(1)                                                      --------->ANAC55(1) <--- <---------AHL20(2)                                                          --------->ANAC46  ------ --------->GT1           --------->AHL20(2)                                  --------->ANAC58  <----- ------->ANAC55(2)    --------->YAB1                                        <---------TOE1(3) ------- --------ANAC55(2)   <---------ATHB12           --------->ZAT18     ---------->DOF2         --------- --AHL20(2)     --------->PCF5       <---------MYB52(1) <---------GLK1(1)  <-----------GT1 <-------TEIL ->AHL20(2)<-----------RAV1(1)    <-------TEIL--------->ANAC46 <----------DOF2    <---------ANAC55(2)   tatgtaatttaatatgtggtccagtcataaaatcgattcgtttgctaaactccactagatttctcctttgtaaagtttcacgttacatattgattcatca  9453500                                                 <---------WRKY12                                        <--------P                                       <-------GAMYB                                      <---------MYB46(3)   --------->WOX13(1)                <---------ANAC58                  <---------TOE2(3) <----------DOF2 ------>TEIL                         <---------ANAC46     ------>ZmHOX2a(1)           --------->ARR11(3) ------YAB1                          <---------ANAC58    --------->TOE2(3)            <---------ARR11(3) --->YAB1                           <---------LBD16  <----------DOF2   <---------YAB1--------->GLK1(1) ----ICU4                   --------->ANAC46     <---------WRKY38(1)   <---------------AtSPL8       - -->ICU4                  <-----------GT1<---------MYB46(3)            --------------->AtSPL8    ---- >YAB1  <---------YAB1   --------->ARR14(2) --------->ZAT14         <---------ATHB51 <---------GLK1(1)   tgaatcaattactatgggtttagtccatttacgcttcttgcggttgttcagtcaactttcctcaaatcaaattatggtacttataagaaatcttttggta  9453600                                                                                                 <---                                                                                                 ----                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                            <--------                                                                                          <--------ATHB1                                                                                          <---------ICU4                                                                                          --------->ATHB51                                                                                          --------->ATHB12                                                                                          xxxxxxxxxxx                                                                                 <------ZmHOX2a(1) xx                                                                                 xxxxxxxxxxxxxxxxxxxx                                                                               xxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                              xxxxxxxxxxxxxxxxxxxxxxx                                                                             <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                                                           <------NtERF2  xxxxxxxxxxx                                                                           ------>NtERF2xxxxxxxxxxxxx                                                                          --------->ZAT18xxxxxxxxxxxx                                                                         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                                                         <---------ANAC58--------->ICU4                                                                xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                           --------->REM1(1)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                                      --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                                                      --------->ANAC58   <---------ANAC58<---------YAB1                                                      --------->ANAC58  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                                    <-----------GT1   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                               <---------AHL20(1)     xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                               <---------ARR11(3)   ---------->DOF2  xxxxxxxxxxxxxxxx                                            <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2) ====================                                            ------>MYB83  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)  xxxxx                                            ------>MYB46(1)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)xxxxx                             <------ZmHOX2a(1) --------->AHL20(1)  xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                     <------MYB83--------->CCA1(2)<-----------GT1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->DOF2   <---------AtLEC2<-------TEIL --------->ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) ------------->AGL1  <------MYB46(1)      <---------MYB59xxxxxxxxxxxxxxxxxxxx>smallRNA(si3) <xxxxxxxx   ccaaaagagtagacaagtttggatggtattaggagatacaaataccaaatattttcacgcttcaactaaacaaaggcgggctaggaacagaataattggt  9453700              <---------ANAC58              <---------ANAC58       xxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->YAB1      xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)     <------ZmHOX2a(2) ------>ZmHOX2a(1) ------ARR14(2) ----->ARR14(2) xxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxx>smallRNA(si3) -WOX13(1)   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxx>smallRNA(si3)                                                                        == xxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)                                                                -- xxx>smallRNA(i2)    <-------GAMYB                        <---------At4g35610                     <-- >smallRNA(fl3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->At4g35610                     === >smallRNA(si3)   --------->ALFIN1                     xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)      <--- >smallRNA(fl3) --------->ALFIN1                       <---------MYB52(1)                        ---- xxxxxxxxxxx>smallRNA(le3)                            <-----------HVH21                         <---- xxxxxxxxx>smallRNA(si3)                             <---------ANAC46                           ----- xxxxxxxxxxx>smallRNA(s2)                           <------NtERF2                           --------- xxxxxxx>smallRNA(si3)<--------P                  <---------DEAR3(1)                 <---------TOE1(2) ===========HOX2a_HOX2a    <---------ICU4    ---------->DOF2      --------->YAB1    ------>ZmHOX2a(1) xxxxxxxxxxxxxxxxx>smallRNA(le3)          <---------HSFB2a(2)    <---------YAB1     ================= xxxxxxxxxxxxxx>smallRNA(si3)             --------->HSFB2a(2)  <----------DOF2      ================= xxxxxxxxxxxxxxxsmallRNA(le3)           xxxxxxxxxxxxxxxxx>smallRNA(se3)    <----------DOF2  <--------   atcctcgatcaaaatagagtgtgggttgataatgaagaaggtatcgagaaagtcgccgtgagctactttgataacttcttttcttcctcggtttcgagag  9453800                                 <---------MYB52(1)                                 <---------ARR14(2)                                 --------->ARR14(2) ==================HOX2a_HOX2a  --------->At5g28300 ---->ZmHOX2a(2)                <-------GAMYB ----ZmHOX2a(2)                <---------MYB46(3) ==================HOX2a_HOX2a<---------ANAC58 ------ARR11(3)               <---------ANAC58                                                <------ ----->ARR11(3)          <-----------RAV1(1)                                           ---------->DOF2 -----GLK1(1)         xxxxxxxxxxxxxxxx>smallRNA(s)                                --------->At4g35610 ---->GLK1(1) ---------->DOF2 <---------ANAC46                          <---------HSFB2a(2)--------->ARR11(3) >HSFB2a(2) ------>ZmHOX2a(1) <---------RAP2.6(2)            --------->TOE1(2)    ----------->GT1 =====HOX2a_HOX2a <---------ARR11(3)                         --------->TOE2(2)   --------->ALFIN1 ====HOX2a_HOX2a  --------->ARR11(3)                        --------->MYB46(3)  <------ZmHOX2a(1) -HSFB2a(2)--------->TOE2(3) <---------LBD16          <-----------ARR10 --------->HSFB2a(2)<---------ARR11(3)   atcccactaatgtccttaaagatgtccatgttgcggttactccaaggatgaacgaggctctaaccaaggaggttacagaagaggaggtgaaaagagcttt  9453900  Previous    Next  AGI:  At2g22210.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 1.1e-19 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 9453369    to: 9456436    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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