Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                               <---------ALFIN1                            <---------ZAT14                            <-------TEIL                            --------->ZAT14                         ------->GAMYB          <---------DAG2--------------->AtSPL3                  ----------->RAV1(1)   --------->ZAT6     --------->MYB52(1)               ---------->DOF2 -------->P        --------->YAB1                  --------->TOE1(3)                --------->ATERF1(1) --DOF2   --------->TOE2(3) <---------ZAT18        --------->TOE2(3)  <---------GLK1(2)   ccttaccagtagccttatctataacaacggtacactcttcaatctcaccataaccttcaaagactccaacaagagtctcgcgagtcgtctcccatggaag  9397200                                                  <---------RRTF1(3)                                                  <---------RAP2.3(3)             --------->At4g35610                                                  <---------RAP2.3(2)          ---------->DOF2                                                  <---------DEAR3(1)         <---------HSFB2a(2)                                          <----------DOF2                    --------->HSFB2a(2)                                         <---------ANAC46                    <---------HSFC1(1)                                       ------>NtERF2                     <---------ARR14(2)                                      <---------DEAR3(1)             <------ZmHOX2a(2)                          <---------bZIP60(1)  --------->ANAC46      --------->ARR14(1)                        <-----------GT1<---------RAP2.3(1)          <---------ARR11(3)                   <---------ANAC46   <---------RAP2.6(2)           --------->ARR11(3)                 =========================HOX2a_HOX2a               <---------ARR14(2)                 ------>ZmHOX2a(1)   <---------LBD16                --------->ARR14(2)                 ========================HOX2a_HOX2a               <---------GLK1(1)          --------->ARR14(2)        <-----------RAV1(1)<------NtERF2--------->ARR11(1)          <---------ARR11(3)       ------>ZmHOX2a(2)  --------->LBD16--------->CCA1(2)          <---------ARR14(2)      <------ZmHOX2a(2) <---------LBD16--------->HSFB2a(1)          --------->ARR11(3)     <---------ARR11(3) <------NtERF2  <---------HSFB2a(1)          --------->ARR14(3)     --------->ARR11(3)<---------ATERF1(1)   --------->ARR14(2)          <---------ARR14(3)     --------->ARR14(2)<---------RAP2.3(1)------>ZmHOX2a(2)           <--          <---------GLK1(2)      <---------ARR14(2)------>NtERF2   --------->GLK1(1)            -----        ----------->ARR10 --------->bZIP60(1)  ----------->HVH21  ----------->ARR10     --------->MYB46(3)   accataaacgaagattttcctgtgtgtaacatcacgatctgcggcttctacgacggcggaatagatcgaagatccgattcgagaagcggaacaaactaga  9397300                                               --------->HSFB2a(2)                                         <---------ARR11(3)                                         --------->ARR11(3)                                        --------->GLK1(1)                                    --------->ANAC46                                    --------->ANAC58                                    --------->ANAC58                                   <---------LBD16                                       <---------ZAT2                               --------->At4g35610                                       <---------At4g35610                          <---------HSFB2a(2)  <---------HSFB2a(2)       --------->ARR14(2)            ------>ZmHOX2a(1)  <---------At4g35610     <---------ARR14(2)<---------ARR14(2)    --------->ZAT2        --------->HSFB2a(2)----------->RAV1(2)     <---------LBD16     --------->At4g35610    <---------ZAT2  --------->DAG2--------->MYB52(1)   --------->ARR14(2)<---------GLK1(2) --------->ALFIN1 -------ETT(2)      <---------TOE1(3)   <---------At4g35610    <-----------------AGL1    --------->ZAT2 ---->ARR14(2)      <---------TOE2(3)   <---------GLK1(1)   <---------MYB52(1)       --------->YAB1   tcgacaagctggtccttggaataaggttgtagaagctcacggagctcttctgggtcgaattcgttgtctgattcggaatcgctagaatcagagctggagc  9397400                              <-------GAMYB                         <---------YAB1                      --------->GLK1(2)                     <---------GLK1(2)                     <---------ARR14(2)                     --------->ARR14(2)                                              <-----------GT1                    <------ZmHOX2a(1)                                  <---------LBD16                  <---------TOE1(3)                                   <---------ANAC58                  <---------TOE2(3)       <---------MYB46(3)          <---------ANAC46              <-------GAMYB <--------P  <---------ANAC46              <---------ANAC58             <---------ANAC58--------->MYB111(2)                     <-------TEIL <---------GLK1(1)             <---------ANAC58--------->MYB55(2)           <---------ANAC58 <---------ARR14(2)             <---------ANAC46<---------MYB46(3)           <---------ANAC58 --------->ARR14(2)     <--   ttgaacttgaatatggcgttgaggattctggttgttgttgttgtttgttaatcttctgtttcttatcgaaattcgtggatttggatttcacgagtttgcg  9397500                                                                                                -----                                                                                              <------                                                                                              <------                                                                                       *TSS   <------                                                                    <---------YAB1   <---------GLK1(1) --------DOF2        --------->ANAC46<------ZmHOX2a(1)  <----------DOF2     <XXXXXXXXXXXXXXXXXXXXMIR832-5P   cttcttagatttgtctagggttttcgccattgtagtagaggataaacgagtcaagaagcttttagggattttgatttttgatttttgatttcagtttcct  9397600                                                                                                    -                                                                                                    <                                                                                                    <                                                                      <---------AHL20(2)            -         <-----------HVH21                       <-----------GT1     --------->AHL20(2)             <     --------->STY1(1)                          <-----------GT1      <---------AHL20(2)      <------- ->ZmHOX2a(1)              <----------DOF2 <---------ANAC46          <---------AHL20(1)     <-------- ---ANAC46                 <---------DAG2  <---------ANAC58      <---------AHL20(2)         <-------- ---ANAC58              <-----------GT1    <---------ANAC58      --------->AHL20(2)   <---------ARR14(2) ---ANAC58--------->WRKY18(1)     ------>ZmHOX2a(1)       <-----------GT1   <---------AHL20(2)      -   gtttcccctcgggtcaagagttcgatttactttatcctcgagatgtcgtttttccgattttttcagtttaattttttttttattcgagtattttgctttg  9397700                                                             --------->ANAC55(2)                                                           <-----------GT1 <---------AHL20(2)                                     <---------YAB1 -------->ARR11(3)                            <---------ARR11(3) ---------AHL20(2)              <------MYB46(1)      <---------YAB1 ---------ARR11(3)              ----------->GT1   <---------YAB1 -------->AHL20(2)              <------MYB83  <---------AHL20(1)                          <---------TOE1(3) ---------AHL20(1)             <---------AtMYB61  <---------AHL20(2)            <---------DAG2 ---DOF2              <---------YAB1          --------->ARR11(3)                <----------DOF2 -ANAC58        <---------TOE2(3)             --------->AHL20(1)     <---------AHL20(2)   <---------YAB1 -ANAC58   --------->AHL20(2) <---------WOX13(1) <---------AHL20(2)  --------->AHL20(2)   <---------TOE2(3) -------->AHL20(1)<---------GLK1(2)      <---------YAB1<---------AHL20(2)<---------AHL20(2)  --------   aatatattttcaaatatttagattatttttggattggtttattttgaatatttttattattttacatatttttaaatatttgctttatatttaagataag  9397800               ----------->GT1              <---------TOE2(3)                                                                    <-       <----------DOF2                                                                             <-      ------>ZmHOX2a(2)                                                                       <------     <------ZmHOX2a(2)                                                                     <---------ANAC46    <---------ARR11(3)                        --------->ICU4                              <---------LBD16    --------->AGP1                            <---------YAB1     --------->LBD16         --------->MYB52(1)    --------->ARR11(3)            ------>NtERF2                 ------->GAMYB<---------At4g35610-----    <---------AGP1              <---------ANAC58               <---------LBD16         <---------DAG2   <---------CCA1(2)            <---------ANAC58              -------->P     --------->At4g35610<----  ----------->ARR10 <---------AtLEC2 <----------DOF2        --------->MYB46(3)         <----------DOF2 ->CCA1(2)--------->REM1(2)   --------->GLK1(2)--------->YAB1 --------->MYB52(1)  <---------MYB59  --   gccttagatctttgtagaggttacatggcaagatgctggctttaagttatgatggctatacatcaaccggaataccataagctccctaactttacggggt  9397900                               <------NtERF2                              ------>NtERF2                              <---------RAP2.6(3)                              <-----------HVH21                             --------->DEAR3(1)                             <---------ATERF1(2)                             <---------bZIP60(1)                             --------->ATERF1(2)                             --------->O2                            --------->ORA47(2)                            --------->RRTF1(1)                            <------NtERF2--------->GLK1(2)       --------------->AtSPL8--------->bZIP60(2)       --------------->AtSPL3--------->RRTF1(3)       <---------------AtSPL8--------->RAP2.3(2)                                      <---------At4g35610       <---------------AtSPL3--------->RAP2.3(3)                             <---------bZIP60(1)   <----------DOF2          --------->RAP2.3(1) <---------ANAC58             <---------REM1(1) --------ZAT14             --------->ZAT18      <---------ANAC58             --------->bZIP60(1) --------ZAT18             <---------ZAT18     <---------STY1(2)             --------->ALFIN1 ---ANAC46               --------->ZAT18<---------GLK1(2)                    <-----------RAV1(1) ---->ALFIN1 <----------DOF2--------->ERF1   ------>ZmHOX2a(1) <-----------GT1 <------NtERF2 -----ANAC46 <---------DAG2<---------ATERF1(1) --------->STY1(2)           <---------MYB46(3) ------->ZAT18    <----------DOF2   ---------->DOF2    <------NtERF2      <---------AtMYB61   gtgaactttgtggtacttttcttttagagcgccgtcagaaaagattcctggctaggcagaggttttagccatattggtggtgtcgctctgctacttgttt  9398000                                                                               ------>ZmHOX2a(2)                                                                              <------ZmHOX2a(2)                                                                             --------->AGP1                                                                             <---------ARR14(2)                                                                             <---------ARR11(3)                                                                             --------->ARR14(2)                                                                             --------->ARR14(3)                                                                             --------->ARR11(3)                          <----------DOF2                                    <---------ARR14(3)                       <-----------GT1                                      --------->GLK1(1)                 <----------DOF2       <----------DOF2        <---------AHL20(2)                 <---------DAG2     <-----------GT1           --------->AHL20(2)         --------->At4g35610  <----------DOF2     <---------YAB1       <---------At5g28300    <------   attcattcaccagttgaaacttttttttctttcttttttatctttatgtgttatgagaaactaaaaaaatagtcaccgagatcttagagagggttttgtt  9398100  Previous    Next  AGI:  At2g22090.1    Description:  UBA1A; AU-rich element binding / RNA binding. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G19380.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83373.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71791.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 9395340    to: 9397587    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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