Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100            <---------ANAC58          <---------ANAC58                                                             --------->ATHB12     --------->ALFIN1                                                                 <---------YAB1  <---------TOE2(3)                                                              --------->YAB1 <-----------RAV1(2)            ---------->DOF2          <---------WOX13(1)     <---------YAB1 -------TEIL                  --------->MYB46(3)       --------->ATHB12       <---------ICU4 ------->GLK1(2)             ------>MYB83 ------>ZmHOX2a(1)                   --------->YAB1 -------ARR14(2)             ------>MYB46(1)          --------->AHL20(2)     <---------YAB1 -------GLK1(2)             ----------->RAV1(1)       <---------AHL20(2)   <---------ICU4 ------>ARR14(2)          --------->MYB46(3)<----------DOF2                --------->YAB1   gattcaggtatggcttcgttggagggaaaccaacaaaagttttcctctttcattgtttaattggtatgtaagttccatcatcatcatagttattgagcat  9393200                  <-------MYC3                                               ------------------------                  ------->MYC3                                  <---------CCA1(1)        --------->ARR14(2)               <---------ANAC46                                 <---------RVE1(1)        <---------ARR14(2)               <---------ANAC58                 <---------AHL20(2)          --------->DAG2               <---------ANAC58               --------->CCA1(2)--------->ARR11(3)       <------ZmHOX2a(1)          <---------bZIP60(2)     ---------->DOF2       --------->ATHB12   ---------->DOF2       ----------->HVH21      <---------ZAT6<------ZmHOX2a(1)  <---------ARR11(3) ---------->DOF2     --------->At4g35610 <----------DOF2   ----------->GT1   <---------TOE2(3) --------->YAB1   tagaataagatgacatggcatgtgagtctttagtgctaaaggagaaggatataatgaacgattgagatatttttgggaaaagcataaagaggaaatggaa  9393300                                                           --------->MYB52(2)                                                           <---------MYB46(3)                                              --------->ARR14(2)       --------->YAB1                         <---------ARR14(2)                                  ---    --------->WOX13(1)               >>>>>>>>>TBF1       <---------MYB52(1)                    ------   --------->MYB46(3)          <------ZmHOX2a(1)       <---------YAB1   <----------DOF2       -------  <---------KAN4(2)          ------------------------>ANAC81  <-----------GT1<----------DOF2 -------- >ANAC81  ---------->DOF2>>>>>>>>>TBF1        --------->GLK1(2)    ---------->DOF2      <-----------GT1   ttggaacaatcagaaagaagtatagaagaagaaggagaagaagaagagaatatggttctgtttgttaccaaaagcttttctttttagtttttactaacca  9393400                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                             <-------                                                                                             <-------                                                                                             <-------                                             <------NtERF2                                   --------                                           <---------DEAR3(1)                                --------                                           --------->ETT(1)                                  --------                                          <---------ORA47(1)                                 <-------                                          --------->RAP2.6(3)                                <-------                                     ------>ZmHOX2a(2)                                   <---------ANAC58                                    <------ZmHOX2a(2)                                    <---------ANAC58                                   --------->ARR14(2)                           --------->TGA1a     -                                   <---------ARR14(2)                           =====================                                   --------->ARR11(3)                           <---------TGA1a     -                                   --------->ARR14(3)                         <---------ALFIN1    <--                                   <---------AGP1                           ----------->RAV1(1) <----                                   <---------ARR14(3)                       <---------ALFIN1 <-------                                   --------->AGP1                          --------->ZAT18   <------- ------>WRKY38(1)                  <-----------ARR10                       <---------ZAT18   <------- --->ATHB12<-------TEIL            <---------ARR11(3)                      --------->RAP2.3(3) ------ -->MYB46(3) --------->TOE2(3)   ----------->ARR10             --------->MYB52(1)       <---------At4g35610 >P    <-------TEIL            ---------->DOF2   --------->AHL20(2)      --------->PCF2 --------->At4g35610   ttgactacatacatacattaatacatagatgaagaaagatcttggtcggcataaaatgtatgacttaacagagagagcccacacttgtgtagcttacgtg  9393500    --------->WOX13(1)  ------------>CBF -------->ANAC58 ------MYB83 ------MYB46(1) -------->At4g35610 ---------At4g35610 --ANAC55(2) --ANAC58 --ANAC55(1) ->ANAC55(2) ->TGA1a ->O2 --O2 --ANAC46 ---------->GT1                                  --------->ARR14(2) ==bZIP_bZIP                                     <---------ARR14(2)     --------->ZAT2 -------->ANAC58                              <---------TOE2(3)         <------NtERF2 ---------RAV1(2)                       --------->ZAT18                 --------->At4g35610 -------HVH21                           <---------ZAT18                 <---------ZAT2 --bZIP60(2)                         --------->SPL7<-------TEIL  <---------LBD16                *TSS< --ANAC58                          <---------SPL7<---------GLK1(2)      <---------At4g35610  <------- --TGA1a                         --------------->AtSPL3     --------->MYB46(3)               <------- ----->HVH21                <---------At5g28300 <------ZmHOX2a(1)--------->MYB52(1)     <----------DOF2   gcaggtcaattagagatgatcacatagagtcactgcccgtactgccctaaggattcgtagtaacaactacgggcagcttcacactcttctctttcatctc  9393600                         --------->GLK1(2)                              <---------TOE2(3)          <-                        <---------GLK1(2)                              --------->YAB1              --                 --------->ARR14(2)                               ----------------->AGL1        ----- ---------CCA1(2)<---------ARR11(3)                          <---------DAG2                  -------- --At4g35610    <---------CCA1(2)        <----------DOF2     <----------DOF2          <---------CCA1(2) --CCA1(2)    ------>ZmHOX2a(1) --------->MYB46(3)        <---------ALFIN1       <---------At4g35610   tcatctctctcttctcctatatctgagattctgaacaactcttctttgatcacaaatctcacactttttccattaatgaacagagctcatttcttctagt  9393700                                                                     --------->ARR14(2)                                                   <---------HSFB2a(1)                          <---------MYB52(1)       --------->HSFB2a(1)      <----------DOF2    --------->LBD16          <-------TEIL       ------->TEIL ---------DOF2         <---------LBD16            <---------TOE1(2)  <---------ARR14(2)     <-------- ---->ZmHOX2a(1)  <---------DAG2                  --------->SPL7    <---------CCA1(2)      <---------GLK1(2) ----->ID1<----------DOF2<---------At4g35610<----------DOF2 <<<<<<<<<TBF1             <---------ANAC46 ->HSFB2a(2)      <----------DOF2      <----------DOF2   <<<<<<<<<TBF1      <---------AHL20(2)   ccttttctctttctttcttcctttttccgctaattacagagcttttctttggtacgttcttcttcttcttgtatctgtttattttgtttcttagattatt  9393800                                               <---------MYB46(3)  <---------GLK1(2)                                             <---------ANAC58    --------->ICU4         <---------MYB52(1)                                             <---------ANAC58    <---------YAB1 <---------WOX13(1)                                  --------->TOE2(3)   ------>ZmHOX2a(1)       --------->ATHB12 <----- -YAB1  ----------->GT1     <------ZmHOX2a(1)<-------GAMYB     --------->YAB1<---------YAB1  --------   gttttgtatgttgtcaaatattgaagtagaggacaacctctaaacttggttgtttcctctgtttttcatgattctttctatgattgctctgttttgtctt  9393900                                                                                                   <-                                                                                                  ---                                                                                                  ---                                                                                                  <--                                                                                                  <--                                                                                                  ---                                                                                          <---------ICU4                                                                                          --------->ATHB51                                                                                          --------->ATHB12                                                                                         <---------YAB1                                                                                       --------->YAB1                                                                                       <---------ICU4                                                                                      --------->ICU4                                                         ---------->DOF2              <---------YAB1-   <-----------GT1                                     --------->ANAC58       <----------DOF2     <-- -----DOF2                                             --------->ANAC58      <---------ANAC58     <-- -->ID1       <---------ARR11(3)                  <----------ID1             <---------ANAC58    <---   ttttttttctcgtcaataacttcaaaacgaagattgctccatatttgataaatggacaagaaagttgtctgaaaattttgctttagttattattattgca  9394000           --------->YAB1          <---------YAB1    <------------MYB.PH3(1)  --------->MYB52(1) ----------->HVH21 -----ZmHOX2a(2) ------>ARR14(2) ------>ARR11(3) ---------ARR10 -------ARR11(3) ------>AGP1 ----->ZmHOX2a(2) -------AGP1                                                   <---------YAB1                    <--- -------ARR14(2)                                             --------->CCA1(2)              <-------- ------CCA1(2)   ----------->GT1<---------ZAT14   ---------->DOF2      <---------TOE2(3)  --------->DOF5.7(2)   gatctaacggttttcataactgttaaatacagagtgaagaaagaatggagttgaaagaacaaggtatgagtatgaggttgtctctggttctcggtaacgc  9394100  Previous    Next  AGI:  At2g22070.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G25360.1); similar to hypothetical protein OsJ_012234 [Oryza sativa (japonica cultivar-group)] (GB:EAZ28751.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71786.1); similar to hypothetical protein OsI_013252 [Oryza sativa (indica cultivar-group)] (GB:EAY92019.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885) Range:  from: 9390682    to: 9393144    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g22080.1    Description:  unknown protein Range:  from: 9393596    to: 9395263    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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