Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100        --------->ANAC55(2)      --------->ANAC46      --------->ANAC58      --------->ANAC58     <---------LBD16   <-------TEIL  --------->CCA1(2)                  <---------ICU4 <---------ARR14(2)               --------->YAB1 --------->ARR14(2)   <---------MYB52(1) ------ANAC58        <---------MYB52(1)       ----------->RAV1(1) ------ANAC58       --------->LBD16--------->TOE2(3)                                                < ------ANAC46     <---------LBD16 <---------ICU4             <---------TOE2(3)               -------- ---RAV1(1)    --------->YAB1    <---------ATHB12------->GAMYB                             ----------   cgagatacacgggactatcatccggtttgttttcaaacattatttcttcaacagaagaagactagggtttcgcaaacgtttttttttttttttctgacaa  9383400                                                                                            <--------                                                                                            ---------                                                                                       <---------AHL20(1)                                                                                       <---------ARR11(3)                                                                                       --------->ARR11(3)                                                                         <----------DOF2  <---------AHL20(2)                                                                         <---------DAG2--------->AHL20(1)                                                                        <---------------AGL15                                                                        --------------->AGL15                                                                       <-----------------AG<---------AHL20(2)                                                                       ----------------->AGL1     ---                                               --------->AHL20(2)      ----------------->AG--------->AHL20(2)                                               <---------AHL20(2)      ==============================                                           <---------YAB1              ==============================                                          <---------AHL20(1)           <-----------------AGL3   <----                                          --------->AHL20(1)           <-----------------AGL1   -----                                          --------->AHL20(2)           <-----------------AGL2  ------                                          <---------AHL20(2)       <----------DOF2     --------->AHL20(2)                                         --------->AHL20(2)      <---------YAB1  <<<<<<<<<<WRKY43 ---                                         --------->YAB1         --------->ARR11(3)     <---------AHL20(2) ---------LBD16                         <---------YAB1          <---------ARR11(3)    --------->AHL20(2) ---->CBF <---------At4g35610       <----------DOF2         --------->YAB1       <<<<<<<<<<WRKY26 --- ->HVH21  --------->At4g35610      --------->TOE2(3)        <---------ICU4       <<<<<<<<<<WRKY38<---   tttggggatttatgctgaatttcagaccaaaaacaaacctttattatattaaaatacactattcattatctttcccttttttggtcaaatatattaatta  9383500                             <---------AHL20(2)                     ----------->GT1                           <---------AHL20(2)                      ------------------------>ANAC81                          --------->AHL20(1)                      ---------->DOF2                         <---------AHL20(2)                   ------>ZmHOX2a(1)                       <---------AHL20(2)                    <---------------AGL15 -ICU4                 <-----------TBP                       --------------->AGL15 >YAB1<---------YAB1   --------->AHL20(2)                    --------->TOE2(3) ------>YAB1         <---------AHL20(2)                     ----------------->AG ============================================================================MADS_MADS =============================================================================MADS_MADS -----ARR11(3)       --------->AHL20(2)              <---------RVE1(1) ---->ARR11(3)       <-----------TBP                 <---------CCA1(1)      ----------->GT1 --->YAB1 ------------>CBF<---------AHL20(1)        <---------AHL20(1)      <----------ID1       <--- ------>TOE2(3)    <-----------TBP                  <---------ARR11(3)     ----------->GT1     <----- ------>TOE1(3) <---------AHL20(2)                <---------TOE2(3)--------->DAG2   ---------->DOF2 ------YAB1    --------->AHL20(2)<---------AHL20(2) --------->ARR11(3)   ---------->DOF2      -------   tcttaaatatgcttcaattttatatatatatattttttattccttcgtatttaagatatttttcctaaaaaagtgaaaaggaaaaaaaaagaaattttaa  9383600                                                                                      <---------AHL20(2)           <------ZmHOX2a(1)                                                          ----------->TBP          <----------ID1                                                              --------->AHL20(2)       ---------->DOF2                                                              ----------->TBP <---------ANAC46                                                                 ------>ZmHOX2a(1) ---------CBF        ----------->GT1                                       --------->AHL20(2) ----AHL20(2)       --------->DAG2 --------->DAG2           ------------>CBF<---------YAB1 -->AHL20(2)      ---------->DOF2 ---------->DOF2         --------->ANAC46--------->YAB1  --------->AHL20(2)   attgctgagaaaaggacaaaaaaaggcaaaacaaaaaaaagtatcagtttatctaaatccaagtcaatattctaaattataatcctatataaataaaaac  9383700                        <------MYB83                        <------MYB46(1)                       --------->MYB59                   <---------YAB1               --------->ANAC58                  <---------AHL20(1)            --------->ANAC58            --------->TOE2(3)             --------->GLK1(2)            --------->YAB1             <---------AHL20(2)           <---------YAB1              --------->AHL20(2)          <---------TOE1(2)         --------->YAB1          <---------TOE2(2)     ------>ZmHOX2a(1)                   ------>ZmHOX2a(1)              --   tcttagtattcttatgttaatatgtttggttctcctaataataaaatctgaagccaaaacgatatgtctccttcttcgaagaagtttaagaaacaatctt  9383800                                         ------>ZmHOX2a(1)                                        <---------ANAC58                                        <---------ANAC58                                   ------>ZmHOX2a(2)                                           <-----                 --------->MYB46(3)=============HOX2a_HOX2a                                  <-------MYC3                 <------NtERF2    ==============HOX2a_HOX2a                                  ------->MYC3               --------->DEAR3(1) <------ZmHOX2a(2)                                         <--------            --------->ANAC58     <---------ARR14(2)                                         <--------            --------->ANAC58     --------->ARR14(2)                --------->ANAC58         ---------          ---------->DOF2       ------->GAMYB                      --------->ANAC58         ---------         <---------MYB52(1)  <---------DOF5.7(2)                ----------->HVH21    <---------ANAC58     <---------ATHB12      --------->ARR11(3)            --------->ATHB12            <---------ANAC58 ---->ZmHOX2a(1)------>NtERF2--------->MYB52(1)   --------->DOF5.7(2)                <---------ANAC46   cctccaaatcagttaagccaccgctagaagataacgatccgtccttgccatcgtttacttcattgcccgacgaaatcgttttggactgcttgcaacgtgt  9383900                                                                  --------->ZAT2                                                                  <---------At4g35610                                                                  --------->At4g35610                                                             --------->ZAT2                                                             --------->At4g35610                                                             --------->O2                                                             --------->TGA1a                                                             <---------ZAT2                                                             <---------At4g35610                                                             <---------O2                                                             ========================================                                                             <---------ANAC55(2)                                                             ----------->RAV1(2)                                                             <---------TGA1a                                                           <---------WRKY38(1)                                                         <-----------HVH21               ------>ZmHOX2a(1) ------HVH21           <-----------HVH21                <------MYB46(1)            --------->HSFB2a(1) -O2         <---------MYB59                            <------MYB83            <---------ZAT18 -TGA1a      --------->TOE1(3)                         --------->MYB59         <---------ANAC58   <-- >O2         --------->TOE2(3)                  ----------------->AGL1         <---------ANAC58   --- >TGA1a     <---------ANAC55(2)                 <-----------------AGL1     <---------MYB52(1)--------   cccaagaagctattacctaaacctctgtcgagtctccaaaaccctaaggtcccttgttcggtcacctgagctctcccgtttgcgaactctcctcccaaag  9384000                                                             <------MYB46(1)                                                             <---------DEAR3(2)                                                             <------MYB83                                                           <---------MYB52(1)                                                          <-------GAMYB                                                       -------->P                                                       <---------At5g28300                                                    <------ZmHOX2a(2)                                                   --------->ARR11(3)                                                   <---------ARR11(3)                                                <-------TEIL <---------MYB46(3)                                               --------->ARR14(1)     <---------ETT(2)                          --------->CCA1(2) ===bZIP_DOF                   <---------YAB1 --------->ARR14(2) -------GLK1(1)<-----------HVH21              --------->ARR11(1)--------->ZAT14 ------>GLK1(1)------>ZmHOX2a(1)              <---------ARR14(2)<---------ZAT18            <---------RAP2.6(2) -->DOF2--------->ANAC46  --------->YAB1 ----------->RAV1(1)<---------AtMYB61             --------->RAP2.6(3)   aattctgtctacgtctccttcagccaaaacataatcaatgttccaccagatacgatctaccgttggttcactcttaagaagaagacgatgaagacggcta  9384100                                                                               <-----------HVH21                                                                              <------MYB83                                                                             <------MYB83                                                                             --------->MYB59                                                                             <---------MYB46(3)                                    <---------ANAC58                         <------MYB46(1)                                    <---------ANAC58                       <--------P                                 <---------ARR14(2)                        <---------MYB52(1)                                 --------->GLK1(2)                        <-------GAMYB                                 --------->ARR14(2)                      <---------MYB46(3)                              <---------YAB1                            <---------DEAR3(1)          -                           --------->GLK1(2)                           <---------LBD16            <--                          <---------ARR14(2)      <---------ICU4       --------->LBD16            <--                     --------->WRKY18(1)         <---------ATHB12      <<<<<<<<<<AtSR1           <---        <---------TOE2(3) <---------GLK1(2)      <---------YAB1       <---------ANAC46           <---        --------->MYB59 --------->ICU4<---------MYB52(1)--------------->AtSPL8<------MYB46(1)    <---        <---------TOE1(3) --------->ARR14(2)   --------->YAB1        <---------LBD16 --------->GLK1(1)   tgaagacgtttaggtataaattggtcaagattccgattccgttcccttctcatcattctatgtacaactcttccgcggttgggtcagaaatctacttcgt  9384200       ------>ZmHOX2a(1)      --------->TOE1(2)     --------->HSFB2a(1)     ------>ZmHOX2a(2)     <---------HSFC1(2)     --------->HSFC1(2)                                                              --------->ANAC58     <---------HSFB2a(1)                                                     <---------TOE2(3)    <------ZmHOX2a(2)                                                        <---------TOE1(3)   <---------ARR14(2)                                                   --------->YAB1   --------->ANAC58   --------->ARR14(2)                                                  <---------ATHB12  --------->ANAC58 <---------MYB46(3)            <---------GLK1(2)                      --------->ANAC58  <---------LBD16 -------->ALFIN1           <---------LBD16                            ------>MYB83 <---------ANAC58 ----MYB46(1)--------->DEAR3(2)--------->ARR14(2)                     --------->ANAC58<---------SPL7 ----MYB83   --------->MYB46(3)<---------ARR14(2)                <------ZmHOX2a(1) <---------ANAC46 ------AtMYB61          <---------GLK1(1)                      --------->ANAC58    <---------ANAC58 ------TOE2(2)          --------->GLK1(1)            --------->ICU4   ------>MYB46(1)--------->ANAC58 ------TOE1(2)      --------->ETT(1)     <-----------------AGL1--------->ANAC58 <--------P   aggtggatccttcgaaccgatgtcggaactctggattcttgatactcgaactggaatgtttagacaaggaccaagcatgaaggttgctcgcacggatgaa  9384300  Previous    Next  AGI:  At2g22040.1    Description:  transducin family protein / WD-40 repeat family protein. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G18140.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO23544.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/YVTN repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) Range:  from: 9381518    to: 9383340    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g22050.1    Description:  Identical to F-box/Kelch-repeat protein At2g22050 [Arabidopsis Thaliana] (GB:Q1PF20;GB:Q9SI00); similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G41360.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN74979.1); contains InterPro domain Kelch repeat type 1 (InterPro:IPR006652); contains InterPro domain Kelch-type beta propeller (InterPro:IPR015915); contains InterPro domain Kelch repeat type 2 (InterPro:IPR011498); contains InterPro domain Cyclin-like F-box (InterPro:IPR001810); contains InterPro domain Kelch related (InterPro:IPR013089); contains InterPro domain Galactose oxidase/kelch, beta-propeller (InterPro:IPR01 Range:  from: 9383764    to: 9384942    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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