Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                           ------>MYB83                         ------>MYB46(1)                         ---------->DOF2     --------->WOX13(1)                        --------->MYB55(1) --------->MYB46(3)              <---------ANAC58            --------->ANAC58                               --------->At4g35610              <---------ANAC58            --------->ANAC58           ------->TEIL  <---------ARR11(3)             --------->ATHB12         --------->ANAC46      ---------->DOF2    --------->ANAC46            --------->ICU4      <----------DOF2 --------->YAB1      <---------CCA1(2)    <---------At4g35610   tcagccatatggcattgattgtgaaccaaacgcgctttcaacacaaccaattacaagagaaccaaagtctgtatctattcaacgagacctcatcagagac  9376000                  --------->GLK1(2)                 --------->DAG2    <----------ID1                ---------->DOF2  >>>>>>>>>TBF1        --------->ATHB12    ------------------------>ANAC81                               <----------DOF2        -------->HAHB4  --------->REM1(2)            --------->YAB1                   --------->DAG2       <---------YAB1   --------->ZAT14        --------->DAG2                     --------->YAB1  <--       --------->ICU4   <---------ZAT14       ---------->DOF2         <---------ICU4 ---------->DOF2   aattcgaaaatgattcagaaaagctgtgaagagaagaagaacaaaaaaaaaagtagcataagtttccaaaaatcaatacttgaatcaaaaagctttcaaa  9376100                                                                                     --------->HSFB2a(1)                                                                                     --------->HSFC1(2)                                                                                     <---------HSFB2a(1)                                                       ---------->DOF2               <---------HSFC1(2)                                                    --------->YAB1               ----------->GT1                             ---------->DOF2     --------->WOX13(1)             --------->ANAC58                        --------->DAG2          --------->AHL20(2)            --------->MYB52(1)                       ---------->DOF2<---------AHL20(2) ----------->GT1   --------->YAB1           - --------->ANAC55(2)--------------->AGL15      <---------ATHB12     ----------------->AGL2        <-- -------AHL20(2)    <---------------AGL15    --------->WOX13(1)   <----------ID1--------->ANAC58 ----   tttatgtgatgaacagggattaacaaaaagagaaagctattcaatttcaatcaattagaaagaaaaaaacaccaaaatcagaacggaaaattcgaaactc  9376200                                                                              <------NtERF2                                                                              ------>NtERF2                                                                             <---------ZAT18                                                                           --------->At4g35610                                                                           <---------At4g35610                                                                           --------->ATERF1(1)                                                         --------->GLK1(2) <------NtERF2                                                        <---------GLK1(2)<---------RAP2.3(3)                                              <---------ICU4             <---------RAP2.3(2)                                             <---------ATHB12            <---------DEAR3(1)                                           --------->WOX13(1)       ---------->DOF2 -------->LBD16  --------->DAG2  --------->ANAC58       --------->ARR14(2)<---------RAP2.3(1) -------LBD16--------->AtLEC2    --------->ANAC58       <---------ARR14(2)<---------ORA47(2) ----->MYB52(1) ---------->DOF2---------->DOF2--------->YAB1     >>>>>>>>>>MYB80   accggagaaattgacatgaaaagcgattaacccagaagccaaaatcaatcaatacccagattcttcaaaccaaagacggcggacttgtgctagggttttt  9376300                                                                                        <---------YAB1                                                                                       --------->AHL20(1)                                                                                       *TSS             <------ZmHOX2a(1)                     <---------HSFB2a(2)                 <---------ARR11(3)      --------->AHL20(2)                           --------->HSFB2a(2)                 <---------AHL20(1)      <---------AHL20(2)                     <<<<<<<<<TBF1                      ------>NtERF2  --------->AHL20(1)                      <<<<<<<<<TBF1                         --------->ZAT18  <---------AHL20(2)            <------------------------ANAC81                 <---------ZAT18  --------->AHL20(2)           <----------DOF2     ------>ZmHOX2a(1)     <---------ARR11(3)  <---------AHL20(1)      <------------------------ANAC81                --------->ARR11(3) --------->AHL20(2)  <----------DOF2     xxxxxxxxxxxxxxxx>smallRNA(i)    <---------GLK1(2) <---------AHL20(2)  <---------DAG2   <-----------GT1                   <---------RVE1(1)    <-------   caaataaattaaacaggagaagacttttcgcttctttttttttcttcttcttcctcgaagagagagagagagagagattttgcgcccaatatttttgggg  9376400                                                                      <---------ATHB12                                                             --------->SPL7         --------->ALFIN1                                                            --------->MYB52(1)    <---------ANAC58                                                            ------>MYB46(1)       <---------TGA1a                                                            ------>MYB83          <---------ANAC58                                                           <---------SPL7         <---------bZIP60(2)                                                          --------->DEAR3(1)      <---------ANAC46                                                          <---------MYB52(2)      <---------ANAC55(1)                                                         --------->ANAC58      --------->ALFIN1                                                         --------->ANAC46 <------ZmHOX2a(2)        >>                                                         --------->ANAC55(1) <-----------RAV1(1)   >>                                                 <---------MYB46(3) --------->MYB52(1)            ---                                                 ------>NtERF2    ------------>CBF<---------O2    <--                                               <---------MYB52(1)<<<<<<<<<<<<<<<<<LFY            ----                   ---------->DOF2     --------->At4g35610--------->MYB46(3) <---------O2       <----            <------------CBF         --------->YAB1      --------->ANAC58--------->ARR11(3)    <----- --LBD16>>>>>>>>>TBF1            <------ZmHOX2a(1)<------NtERF2  >>>>>>>>>>>>>>>>>LFY --------->ALFIN1   gaacagagaagaagaattgaagaaagagagagagaggaatcagaagaccggtggctaacaccgaacgagccaatggatcatgtggcgtgtgggtttttta  9376500         <---------DEAR3(2)     <---------ANAC58        --------->ETT(1)        <---------ANAC55(1)        <---------At1g77200     <---------ANAC58        <---------DEAR4(1)      <---------ANAC46        <---------DREB2C(2)     <---------ANAC55(2)        <---------DEAR3(1)     ----------->STF1      <-----------HVH21       <---------TGA2(2)     --------->ALFIN1        ----------->TGA1     ----------->HVH21     <---------At4g35610    ------->MYC4           ----------->bZIP910(2)    <-------MYC2    --------->TGA1a    ------->MYC3    <---------O2--------->ANAC55(2)    -------->ABF1   <---------bZIP60(2)    <-------MYC4    --------->O2>>>>>>>>>>HY5    ------->MYC2    --------->ANAC55(2)    <-------MYC3    <---------ANAC58   <--------ABF1    <---------bZIP60(1)   <---------TGA1a  ===============================================MYC_MYB   --------->O2     <---------ANAC55(2)   --------->ANAC55(2)   <---------ANAC46   <---------ANAC55(2)--------->ALFIN1   <---------O2     --------->bZIP60(1)   --------->TGA1a  <---------ANAC46 <---------ALFIN1   <---------ANAC58 >>>>>>>>DREB2A     <---------TGA1a >>>>>>>>DREB1A    ----------->STF1                                --------->HSFB2a(2) ------>At1g77200  ----------->bZIP910(1)                          <---------HSFB2a(2)            --- -------ETT(1)    <---------TGA2(2)                             <---------YAB1                   <--- ----->DEAR3(2)  ----------->HVH21        --------->ETT(2)    <----------DOF2     <------ZmHOX2a(1)-- -----At5g28300  ----------->TGA1     <---------AHL20(2)  <--------P           <------ZmHOX2a(1)<---- ------GT1   <------NtERF2 --------->At4g35610          ----------->GT1  <------ZmHOX2a(1)      <----   ccgacacgtgtcggtgtcgatgacgtggctgatgacgtattatatcgacggtctggtctggtaacttttatagaaggagaaggaggaaagtttacgatgc  9376600                       <-------MYC2                       -------->ABF1                       <-------MYC3                       ------->MYC2                       ------->MYC3                       ------->MYC4                       <-------PIF5                       <-------MYC4                       ------->PIF5                      <---------ANAC55(2)                      <---------bZIP60(2)                      --------->ANAC55(2)                      --------->TGA1a                      >>>>>>>>>>AtMYC2    <---------ANAC46         --------->TOE2(3)   <------NtERF2<---------ANAC58        <---------ANAC58   <---------ANAC46        <---------ANAC58   <---------ANAC58        <---------ANAC46   <---------ANAC58       <---------TOE2(2)  <------NtERF2   --------->ANAC55(2)       <---------TOE1(2)--------->ALFIN1  <---------ANAC58                                         <- --->NtERF2           >>>>>>>>>>HY5       <---------ANAC55(1)                          <----------DOF2 ------SPL7           <---------O2       <---------TOE1(3)                             <---------DAG2 ------->SPL7         --------->O2       <---------TOE2(3)                --------->DAG2         <--- -----ANAC58          >>>>>>>>>>ABI5    <---------DOF5.7(2)              ---------->DOF2   <---------AHL20(2) -----ANAC58          <---------TGA1a --------->DOF5.7(2)   <-----------GT1----------->GT1 --------->AHL20(2)   ggacggtcttacgtttattttgacacgtggcgtagtagatgttaacgtgttcttaaatcaaattacaaaattacaaaaagtaaacaacgctttttaattt  9376700                                                              <---------MYB52(1)                                                        <-----------GT1                                                     <---------CCA1(1)                              -                                <---------YAB1       <---------RVE1(1)                              <                          <---------YAB1            --------->ARR11(3)                            ---   ------>ZmHOX2a(1)      <---------TOE2(3)         <---------ARR14(2)      --------->YAB1       ---- ----------GT1       <---------ZAT6                 <---------ARR11(3)   --------->WOX13(1) --------- --------GT1 <----------DOF2 --------->ICU4 <-----------GT1 ------>ZmHOX2a(1)   --------->YAB1-------   ttctccttctgttttcttttttagtgttaacattatgagatttgttttactgaagatatttcctgttatttggattaatcaaaaataacaaaaaaaaagg  9376800 --------->At5g28300      ----------->GT1 ---------->GT1          --------->DAG2 ---------ANAC46        ---------->DOF2 ------>At4g35610   <---------TOE2(3)                      ----------->GT1   --------->AHL20(2)     < ----->ALFIN1     ---------->DOF2                        ---------->DOF2   --------->AHL20(2)   ----- ->DOF2          <---------AHL20(2)                <---------MYB52(2)      --------->AHL20(1)  <----- -->DAG2        --------->AHL20(2)               --------->ZAT6           --------->YAB1       ------   tgctgtaaaacttagcaatttaaaggtaaagttaaaagaatgttagtatcaccactaactaaagaaaaaatcacaaaaataatatggtattgtttgaata  9376900  Previous    Next  AGI:  At2g22010.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to hypothetical protein OsJ_024218 [Oryza sativa (japonica cultivar-group)] (GB:EAZ40735.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71774.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66347.1); contains InterPro domain B302, (SPRY)-like (InterPro:IPR001870); contains InterPro domain SPla/RYanodine receptor SPRY (InterPro:IPR003877); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 9370801    to: 9376387    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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