Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         ------>ZmHOX2a(1)                                                                      <---------ARR14(2)                                                                      --------->ARR14(2)                      --------->AHL20(2)                      --------->At4g35610     --------->TOE2(3)                      --------->YAB1                          <---------At4g35610  --------->ARR14(2)                   --------->WOX13(1)                        <---------YAB1        <---------ARR14(2)          --------->HSFB2a(2)                             --------->GLK1(2)       <---------CCA1(2)          <---------HSFB2a(2)      ---------->DOF2    --------->AHL20(2)      <----------DOF2     <--   tatatgttttttctaaaaaatcaattaaaaaatcagagaaagtagttttttgccaaaaaaattctgatgccgaatttgagctttgtatcctcagttttct  9357200                        --------->YAB1                      --------->AHL20(2)                    <----------DOF2                   <---------ANAC58            <---------RVE1(1)            <---------CCA1(1)           <---------ARR11(3)     --------->ARR11(3)                                       ----------           --------->ARR11(3)     <---------ARR11(3)              ----------->GT1          --------->ICU4           <---------AHL20(1)   ----------->GT1        --------->DAG2           <---------YAB1     <-         ----------->ARR10 ---------->DOF2            ---------->DOF2         <------ZmHOX2a(1)   --- -------TOE1(2)    <---------ANAC58           ----------->GT1    <------ZmHOX2a(1)    <---------TOE2(3)   taggtgttagtaagatattttgcttttaataaagaagataattttgtgaagaaaaaaaaagttttgaggagaaaaatagaggataattaagaaatgttta  9357300                                                                                   <-----------GT1                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                --------------->AtSPL8                                                                              xxxxxxxxxxxxxxxxxxx>smallRNA(fl3)                                                                              <---------AHL20(2)                                                                          <---------ICU4                                                                         <---------YAB1                                                                        <---------ARR11(3)   ----------->GT1          ---------->DOF2                 <----------DOF2  --------->AHL20(2)------ ->GT1        <---------MYB52(2)  ----------->GT1<-----------GT1        --------->ARR11(3)<---------AHL20(2) --------AHL20(2)          <---------AHL20(2)  --------->AHL20(2)      --------->YAB1    --------->AHL20(2) ------>AHL20(2)<---------ICU4   ----------->GT1<---------AHL20(2)    --------->ICU4    <xxxxxxxxxxxx   taaaatggtcaaaacaactaatgacatatttaaagggggaaaaatgtcatttaatccctcaactttcaaaaaatgatcattttatataccattttatata  9357400                                                   --------->WOX13(1)                                                  --------->AHL20(2)                          --------->WRKY38(1)     <---------AHL20(2)                 --------->GLK1(1)                          --------->WRKY12    <---------AHL20(1)                     <---------CCA1(2)                          --------->WRKY45    --------->AHL20(2)                  <------NtERF2           <---------AHL20(2)                 <---------AHL20(2)                 --------->RAP2.6(2)           <---------AHL20(1)                 --------->AHL20(1)                 ----------->RAV1(1)           --------->AHL20(1)              --------->TOE2(3)                 --------->MYB46(3)<----- xxxxsmallRNA(si3)  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<---------TOE2(3)  --------->MYB52(1)<------- --->CCA1(2)--------->CCA1(2)    --------->ICU4  --------->AHL20(2) --------->ANAC55(2)     --------- xxxxxxxxxxxsmallRNA(i2) --------->DOF5.7(2) --------->AHL20(2)   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)   tgcgactgtttaatatatgaactaaacgttgactaatttttaaaacattaaattaatcaacgtttagtttatgtattaaacggccgcatatcaaattaat  9357500                                                                           <---------ICU4                                                                      ------->GAMYB                                                                    ------>MYB46(1)                                                                    ------>MYB83                                                                    -------->P                                                                   --------->MYB55(1)                                                                  <---------ALFIN1                                                                  --------->AtMYB61                                                                  <---------MYB111(2)                                             --------->LBD16      <---------MYB46(2)               --                                            <---------ALFIN1      --------->MYB46(3)              <--                                            --------->ANAC58      <---------MYB55(2)       --------->YAB1        <---------YAB1                      --------->ANAC58      <---------MYB111(1)      <---------ICU4      --------->YAB1                       <---------LBD16        --------->DEAR3(1)      --------->ICU4  <---------AHL20(2)                       --------->LBD16       --------->MYB46(3)     --------->YAB1 ----TOE2(3)                           <-----------GT1     <---------At4g35610          <---------ICU4 --AHL20(2)                    --------->ANAC46            --------->At4g35610         <---------AHL20(2) >AHL20(2)    ---------->DOF2<-----------GT1--------->ANAC46   --------->REM1(1)       --------->AHL20(2)   gtataaaatgacaattgaaagttgagagattaaacgacatttttccccgcatcactgtttcagcttcaccaaccccattattctctctattaattatcaa  9357600                                                                      ----------->GT1                                                                 <------NtERF2                                                                --------->LBD16                 -----                      <---------ICU4                            ------>NtERF2                  ------                      -------->HAHB4                           <---------ANAC46               <------                      <---------AHL20(2)                      <---------LBD16              <---------                     <---------ATHB51                        --------->LBD16          --------->ARR14(2)         <---------YAB1*TSS                                  ------>NtERF2<---------HSFB2a(1) -------    ----------->GT1  --------->ICU4                         <---------DEAR3(1)        <---------ARR14(2) ------->AHL20(2)    <---------YAB1         --------->DAG2 <---------LBD16--------->HSFB2a(1)<------- -------ATHB12   <---------MYB52(1)        ---------->DOF2------>ZmHOX2a(1)    <---------YAB1<-------   atgaattagttattagtcccttaattattcaaaaaaaaaaaaaaaaaaagtcgactcatcctccggcgggagtagaaaattcttcttggttctgcaggtg  9357700                                                                                             <-------                                                                                             <-------                                                                                            <--------                                                                                           <---------                                                                                        <----------DOF2 ------>GT1                                                                            <------------- --->ALFIN1                                                                            -------------- -PIF5      <---------------AGL15                                                 <----------DOF2 --RAV1(2)  ------>ZmHOX2a(1)                                                     ------>ZmHOX2a(1) >PIF5     --------->TOE1(3)        --------->AHL20(2)      --------->DAG2    --------->ARR11(3) --ZAT2    --------->TOE2(3)        <---------AHL20(2)     ---------->DOF2    <---------ARR11(3) --At4g35610=========================================================================================   gtaatcttgttttccttaatgaagtttcttagcgctaattttttatatgttttctcgtttaaaaagtgtcaatttttaaaaatcctttcccttttacggt  9357800                                                                          --------->AHL20(2)                                                                          --------->AHL20(1)                       <----------DOF2                                  <---------ARR11(3)                <--------ATHB1                                          --------->ARR11(3)                -------->HAHB4      <---------HSFB2a(1)                 --------->AHL20(1) --TOE1(3)      --------->YAB1      <---------HSFC1(2)                  <---------AHL20(1) --TOE2(3)      <---------ICU4      --------->HSFB2a(1)      <---------ZAT2   <-----------GT1 -At5g28300    <---------YAB1       --------->HSFC1(2)       --------->ZAT2<---------YAB1 --GT1         --------->ICU4     ---------->DOF2            <---------HSFC1(2) --AGL15       <---------ATHB51--------->HSFB2a(2)           <---------HSFB2a(1)               ------ ->AGL15 ----------->GT1       <---------HSFB2a(2)           --------->HSFC1(2)              <------- ==MADS_MADS --------->YAB1   <---------LBD16 <---------AHL20(2)        --------->ICU4<---------YAB1   tcaatttgatttggataataattctctttttctctggaaagttcgaatttttttttgtttggaagcttggagaaaatattatactcttctcattgaatga  9357900                         ------>ZmHOX2a(2)                                                 --------->WRKY18(1)                       --------->ARR11(3)                                                 <----------                       <---------ARR11(3)                                               <---------DREB2C(2)            ------>ZmHOX2a(1)                                                         <-----------HVH21            ================HOX2a_HOX2a                                           <---------ARR11(3)        <---------ARR14(2)                              <----------DOF2           <---------ARR14(2)        --------->ARR14(2)                      <---------ARR11(3)                --------->ARR14(2)   <-----------GT1   ------>ZmHOX2a(2)          --------->GLK1(2)  --------->ARR11(3)<-----------RAV1(1) --->YAB1   ====================HOX2a_HOX2a  --------->AHL20(2)---------->DOF2    --------->ARR11(3)- --WOX13(1)--------->TOE2(3)     <---------DAG2--------->RVE1(1)--------->DAG2   <---------GLK1(1) <-   tcaatttacaaatcctcatttgatcgatcttgtcaatttttgaaaaaaaaaatctgaactttgagaaaagttattgagtttcgatatctgtcggtcatgg  9358000              <---------ANAC58              <------MYB46(1)              <------MYB83              <---------ANAC58             --------->MYB59            <---------ANAC46           <---------MYB52(1)          <-------GAMYB         --------->MYB55(2)        <------MYB83         <----------DOF2         <--------P                          <---------ICU4         <-----------RAV1(1)   <------MYB83                          --------->YAB1     <---------RAP2.6(2)      --------->MYB46(2)                     -------->HAHB4                 -   <-----------RAV1(1)        <---------TOE2(3)                     --------->ICU4                >>> >>>>>>>>>ARR2<---------ANAC46--------->MYB59--------->ARR11(3)     <---------ATHB51             ---- -HVH21  <---------MYB46(3)   --------->MYB111(1)               ------>ZmHOX2a(1)          <---------TOE1(3) -------->ATHB12     <----------ID1<------MYB46(1)             --------->TOE2(3)           <---------TOE2(3) --------YAB1<---------MYB46(3)<------MYB46(1)           --------->LBD16               <----------DOF2   tttgattgtggctgttgggtaagacaacaaattaggtagggttttgtgatattgatgtccgtagtccttaattatggccaaattgttgtcttttaggttt  9358100  Previous    Next  AGI:  At2g21940.1    Description:  shikimate kinase, putative. Identical to Probable shikimate kinase, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SJ05); similar to shikimate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39540.1); similar to shikimate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39540.2); similar to putative shikimate kinase [Fagus sylvatica] (GB:ABA54868.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623) Range:  from: 9357623    to: 9360311    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version