Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                    <---------LBD16                                                                                 <---------LBD16                                            ----------->RAV1(1)                ======================                                        ------>ZmHOX2a(2)                      ------>ZmHOX2a(2)                                       --------->CCA1(2)                      <---------GLK1(1)                                       <------ZmHOX2a(2)                  ===========================             ----------->RAV1(1)      --------->ARR11(3)                  <------ZmHOX2a(2) --------->At4g35610                  <---------ARR11(3)            --------->ARR14(2) ----ZmHOX2a(2)                       --------->ARR14(2)            --------->GLK1(2) ------ARR14(2)                       --------->AGP1                <---------ARR14(2) ------ARR11(3)            ---------->DOF2 --------->REM1(1)       --------->RVE1(1)   ----------->HVH21 ----->ARR14(2)   --------->MYB52(1)  <---------AGP1             --------->AHL20(2)--------->LBD16 <-   atcagcaaaacaatccaacaaaactgaacaaaagcatttagatctacaacaaatatacaaaatacaaaaaaatccgatcgatctccgggctcacagaagc  9273100               <---------ARR14(2)               --------->ARR14(2)             <---------------AGL15             --------------->AGL15            ----------------->AGL1            <-----------------AGL1            ----------------->AG            <-----------------AG            <-----------------AGL2           --------->MYB52(1)           <-----------------AGL1           <-----------------AG           ------->TEIL         <---------SPL7       <---------------AtSPL8       --------------->AtSPL8       --------------->AtSPL3    --------->MYB52(1)       ------->TEIL            <---------MYB52(2)       <---------------AtSPL3 --------->ANAC58                                                -------  --------->At4g35610         --------->ANAC58                                             <---------ANAC55(2) =====HOX2a_HOX2a             --------->ANAC46             <---------MYB52(2)              --------->ANAC58 =====HOX2a_HOX2a             --------->ANAC55(1)        ---------->DOF2 --------->MYB52(1)--------->ANAC55(2) -----ZmHOX2a(1)   ----------->GT1 --------->ZAT6  ----------->GT1    --------->YAB1       --------->ANAC58   aggaagatgaacgtaccgatttgggaaaatacaagtaacagtagtagtagtagtagtaacaaagaacgagaatagtaacagagtaatcgaatcaagtaac  9273200                        <-----------HVH21                      <-------TEIL                      ------>ZmHOX2a(2)                      ===============HOX2a_HOX2a                     ================HOX2a_HOX2a                     <------ZmHOX2a(2)                    --------->AGP1                                           --------->ARR11(3)                    <---------GLK1(2)                                      ------->GAMYB                    --------->ARR14(2)                                    --------->MYB46(3)                    <---------ARR14(2)                               --------->ALFIN1                  ----------->ARR10  <------ZmHOX2a(2)             <---------ANAC58            =========================HOX2a_HOX2a                   <---------ANAC46               <--           ==========================HOX2a_HOX2a                   <---------ANAC58              ----           <------ZmHOX2a(2)        --------->ARR11(3)        ------>ZmHOX2a(2)                 -----          --------->ARR14(2)        <---------ARR11(3)       <------ZmHOX2a(2)                  <----          <---------ARR11(3)      ----------->ARR10         --------->ARR14(2)                <------          <---------ARR14(2)  ==============HOX2a_HOX2a     <---------ARR14(2)           <xxxxxxxxxxx -->MYB52(1)------>ZmHOX2a(2) <------ZmHOX2a(1)   <---------LBD16 <------NtERF2     <xxxxxxxxxxxxxxxx   agagaaacacaagatcggaacagatccgtcgaggatgagatcatcgatatcactcggagtccgatctcggcgtgtaacagaccttggaatcaataacgtc  9273300                                                                                       --------->ANAC58                                                                                       --------->ANAC58                                                                                       --------->ANAC46                                                                                    ----------->HVH21                                                                                    <---------SPL7                                                                                   --------->MYB46(3)                                                                                  <---------LBD16                                                                              <-----------HVH21                                                                             <---------ICU4                                                                        --------->ANAC58                                                                        --------->ANAC58------>NtERF2 ----NtERF2                                                          --------->ARR14(2)--------->RAP2.6(2) -->NtERF2                                                           <---------GLK1(2)--------->SPL7 ---->DEAR3(1)                       --------->At4g35610             <---------ARR14(2)xxxxxxxxxxxxxx -----DEAR3(1)                     --------->ATHB12            --------->MYB46(3) --------->At4g35610 -----TGA1                        <---------YAB1               <---------ABI4(2)  ----------->RAV1(2) xxxxxxxxsmallRNA(l2)         <-----------HVH21            <xxxxxxxxxxxxxxxxxsmallRNA(si3) xxxsmallRNA(si3)       <---------ARR11(3)                 <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)   gccgtattgagcgaaggcagtctcaagagctctgtcatcagtggcccatgctagacctccaacgaagcaccgatactcaacatcaccggacgccattgaa  9273400              --------->MYB52(1)            ------>ZmHOX2a(2)           <------ZmHOX2a(2)           --------->CCA1(2)                                                                    <----          --------->ARR14(2)                                                             --------->At4g35610          <---------ARR11(3)                                                           <---------RAP2.3(3)          --------->ARR11(3)                      --------->REM1(2)                    --------->ZAT18          <---------ARR14(2)          --------->At4g35610                           --------->DAG2  <          --------->AGP1              <---------At4g35610                       <---------AHL20(2)  <          <-----------ARR10         --------->ZAT18                        <---------MYB52(1)  <-----          <---------AGP1       <---------ZAT14   --------->ALFIN1        ----------->GT1 <---------At4g35610   ---------->DOF2             --------->ZAT14 <---------ANAC46          *TSS   --------->YAB1 ------ xxxxxx>smallRNA(le3) <---------ZAT14 <---------ZAT14      <---------REM1(1)  <-----------TBP--------   atttgaaaagaagatctaagggattacagtgagagtagtgagcagtgagatgtgtagaacgatgtagacgaagtctcgttatttataagggggctgagat  9273500                                        <---------ANAC55(2)                                        --------->ANAC55(2)                                  <------MYB83     <---------TOE2(3)                  <---------ANAC46                                     <------MYB46(1)  --------->MYB46(3)                    <---------ANAC58                                   ========== -----RVE1(1) <---------CCA1(1)         <---------ANAC58                                   <--------P <<<<<<<<GT-1 <---------RVE1(1)     <----------DOF2                                      --------->ATHB12 -----------GT1       <---------TOE1(2) <---------ANAC55(1)                              <---------MYB46(3) ----ARR11(3)--------->ARR11(3)   <------MYB46(1)                                        --------->MYB55(2) --->ARR11(3)<---------ARR11(3)   <------MYB83               ----------->GT1      <-------TEIL --->ARR10  <<<<<<<<<RAP2.2       <---------DEAR3(2)   <-----------GT1   ----------->GT1<---------AtMYB61   attaaccaaggtttagatattttctaggtttagagtcggtttacgtgaattctggtttaaccatggttaaatctgtagttaaaattcgtagtggttgggg  9273600             <---------DAG2             <----------DOF2       ----------->HVH21      <-------MYC3      ------->MYC3     <---------bZIP60(2)     --------->TGA1a     ===================bZIP_DOF     ===================bZIP_DOF     <---------bZIP60(1)     --------->ANAC55(2)     <---------O2                                              <---------AHL20(2)     --------->bZIP60(1)                                   <---------CCA1(1)     <---------TGA1a                                       <---------RVE1(1)         --------->ARR11(3)     <---------ANAC55(2)                                  --------->AHL20(1)         <---------ARR11(3)     --------->O2                                         --------->ARR11(3)        --------->RVE1(1)     --------->ANAC46                                     <---------AHL20(1)        --------->CCA1(1)   <-------------DYT1                                     <---------ARR11(3)    >>>>>>>>>>GT-3b <-----------HVH21                  ---------->DOF2   ---------->DOF2        ----------->GT1   ------ ==============MYC_MYB      --------->LBD16<---------------------WRI1      ---------->DOF2  ---------   acatatcacgtgacactttttggtttaatgcgcaaatggaaagacgacgatgcgagaaaagatattttatcttgggacaaagaaaaatatctcagtggag  9273700                                                                      --------->MYB52(1)                                                                   --------->ANAC58                                                                   --------->ANAC46                     ----------->HVH21                             --------->ANAC58      --------->ARR11(3)                                    ----------->GT1      <---------ARR11(3)    <----------DOF2                --------->ALFIN1     --------->RVE1(1)   <---------ARR11(3)              <---------ANAC58                    --------     --------->CCA1(1)   --------->ARR11(3)              <---------ANAC58               <------ZmHOX2a(2) --------->AHL20(2)--------->At4g35610                   <---------ANAC46            <------NtERF2 ----->GT1         <---------At4g35610                   <---------bZIP60(2)         --------->LBD16 >ALFIN1       <-----------HVH21    <---------MYB52(1) --------->MYB52(1)          <---------LBD16   caaaaaaatatctcatatgtcaaatgacatctttatcccttagtttgaaatttgaaataacgtggtgatacacaactgatactgggccggatcaattcgg  9273800                                                                  --------->AHL20(2)                                                              <---------AHL20(1)                                          ----------->HVH21   --------->AHL20(1)                   <x                                 --------->ATHB12       ----------->GT1                           <xx                                 --------->ATHB51   <---------TOE2(3)        ---------->DOF2 <xxxxxxx                                <---------YAB1 --------->ATHB12   <---------AHL20(2)     <<<<<<<<<<<<   ----------------->AGL3     --------->YAB1  --------->MYB46(3)--------->TOE2(3)        <xxxxxxxxxxx ->RAP2.6(3)                ----------->GT1  <-----------------AGL1<---------AHL20(2)   --------->ETT(2)   ctagtccctattttagtcgcgatagtagtctagtataattgggcctgaaccattgaggcagaaaaatattaatttgagaaaaagagaatgttgacagtgg  9273900               <xxxxxxxxxxxxxxxxsmallRNA(s)              <----------DOF2          ------>NtERF2          <xxxxxxxxxxxxxxxxsmallRNA(fl3)         <---------ALFIN1         --------->ANAC46         --------->ANAC58       <---------ALFIN1     --------->TOE2(3)       <xxxxxxxxxxxxxxxsmallRNA(se3)      <xxxxxxxxxxxxxxxxsmallRNA(se3)               <xxxxxxxxxxxxxxxxxxsmallRNA(si3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        ------>MYB46(1)      <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          -------->P      <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    ------>MYB83        ---------->ID1      --------->TOE1(2)     --------->TOE1(3)     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)     <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)     <xxxxxxxxxxxxxxxxsmallRNA(s)  <-----------RAV1(1)<xxxxxxxxxxxxxxxxsmallRNA(s)     --------->DEAR3(2)  <---------GLK1(2)        <xxxxxxxxxxxxxxxxxxxsmallRNA(i2)     <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    ------->TEIL<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)<xxxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)        <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <------NtERF2<xxxxxxxxxxxxxxxxsmallRNA(i)        ------->TEIL <xxxxxxxxxxxxxxxsmallRNA(se3)   ----------->RAV1(2) <xxxxxxxxxxxxxxxxsmallRNA(s)   <---------ANAC46 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)   ------>NtERF2<xxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ANAC58 xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<---------ATERF1(1)------>NtERF2 *TSS      --------->MYB52(2) xxxxxxxxxxxxxxxxxsmallRNA(l2)   <xxxxxxxxxxxxxxxxxsmallRNA(le3)    <-----------RAV1(1) <---------AtLEC2 <<<<<LFY--------->ANAC58<---------ARR14(2)     --------->AtMYB61 <----------DOF2   <---------ANAC58 xxxxsmallRNA(le3)       --------->ARR14(2)   <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)  <---------AtLEC2   gatttgaacccacgccctttcggaccagaaccttaatctggcgccttagaccaactcggccatatcaactttgttgctacttagttgcatgcatgtaatt  9274000  Previous    Next  AGI:  At2g21660.1    Description:  ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding. Identical to Glycine-rich RNA-binding protein 7 (GRP7) [Arabidopsis Thaliana] (GB:Q03250;GB:Q8LEV4;GB:Q94B62); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.2); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.3); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabid Range:  from: 9272329    to: 9273473    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g21670.1    Description:  pre-tRNA. tRNA-Leu (anticodon: AAG) Range:  from: 9273889    to: 9273969    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version