Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          --------->ZAT14                  ------>NtERF2                  --------->LBD16                                     <---------GLK1(2)                 --------->DEAR3(1)                               <---------At4g35610             --------->ZAT14                                   <----------DOF2       <---------AHL20(2)             <---------ZAT14  <----------DOF2                 <---------ICU4         <---------YAB1         <---------ICU4 --------->ZAT2                      --------->GLK1(2)       <---------AHL20(1)     --------->ICU4     <---------ZAT2        <----------DOF2<---------HSFB2a(1)  <---------AHL20(2) ---------ANAC55(2)   <------NtERF2          <---------DAG2<---------GLK1(2)     --------->YAB1    -- -------->ANAC55(2)------>NtERF2          <-----------GT1 <------ZmHOX2a(1)     <---------YAB1     -- ----->WRKY18(1)<---------LBD16       <----------DOF2   <---------TOE2(3)   <----------DOF2  --------   tcaagtattgatcagtgctccggccgagcagtctttctctcttttcaccttttgtatttaggaatctttgctgattctctttataatattattcaaaaaa  9249500                                                                   -------->P                                                              <---------ICU4                                                              --------->YAB1                                                             --------->ICU4       <---------ARR11(3)          --------->LBD16           <---------ATHB12       --------->ARR11(3)        <---------LBD16        --------->ANAC58     <---------AHL20(2) ------->ANAC58             <---------ALFIN1            --------->ANAC58 <---------MYB46(3) ------->ANAC58           <---------ALFIN1          <---------ANAC55(2)  ----------->GT1      ------- ->AHL20(2)             ----------->RAV1(1)   --------->AHL20(2)   ------->TEIL  ----------->GT1   taagcaaactatcttctgtcattgtgccacacacttccgcattctaaactaaatacttaagcaataatcaacctgttgttaaaatgtaatttgaaatcaa  9249600                                                                        --------->YAB1                                                                      ----------->RAV1(1)                                     -------->ATHB1          --------------->AtSPL8                                     --------->ATHB12        --------------->AtSPL3   <---------WOX13(1)           --------->YAB1            <---------ICU4          --------->MYB59        --------->ATHB12          <---------YAB1            <---------YAB1       --------->ARR11(3)    --------->ARR11(3)        --------->YAB1           <---------AHL20(2)      <---------ARR11(3)    <---------ARR11(3)       <---------YAB1           --------->AHL20(2)       <---------ARR14(3)   --------->YAB1      <---------ARR11(3)   <---------AHL20(2)            --------->ARR14(3)  <---------YAB1      --------->ARR11(3)   --------->AHL20(2)            <---------GLK1(2) <---------ICU4 -->AHL20(2)            <---------ICU4       ----------->GT1 <---------------AtSPL8<---------YAB1  <-   atactaaatatcatcatactaactcatatttatataaaatcattgaatggataaaacaagattttggtactccaacataatgatattgattgaattttca  9249700                                                                                        --------->At5g28300     --------->AHL20(2)                                                    --------->YAB1 ----------->GT1  --------->TOE2(3)                                      --------->AHL20(2)    <----- --------ATHB12   --------->TOE1(3)  --------->WOX13(1)           ----------->HVH21    ----------->GT1   aatcagttaaaatacaaaaaccataaacaaacctccagttaatcaaatgtgagattgagggtttagaagtgacaaaataatagttaagggggtgaatatg  9249800                                                         <---------AHL20(2)                                                         --------->AHL20(2)                                                        <---------AHL20(1)                                                     --------->AHL20(2)                                                    --------->AHL20(1)                                                    --------->AHL20(2)                                                    <---------AHL20(2)                                                    <---------AHL20(1)                                                   --------->AHL20(2)              --------->ALFIN1                 <---------AHL20(2)                *TSS --------->ARR14(2)            --------->ALFIN1                   --------->AHL20(2)                --------->MYB52(1)            --------->CCA1(2)             <---------ATHB12                 <----------ID1<---------ANAC58 --------->ANAC58      <------------CBF  ------>MYB46(1)--------->AHL20(2) ----------->GT1     ------ --------->ANAC58 <-------GAMYB          ------>MYB83<---------AHL20(2) --------->DAG2<---------GLK1(2) --------->ANAC46----------->GT1       <---------MYB59  <---------AHL20(2)----------->GT1<---------ANAC58 ----YAB1  --------->ARR11(3)   <------------CBF   <---------AHL20(2)  ---------->DOF2<---------ARR14(2)   aaaacgaaactaagatgtggggttacattgaaggcattgaaccaaacatttaaattaatttaattaacaaaaaaaaagggaaaaaacggattcttgtgat  9249900                                  --------->CCA1(2)                                  <------ZmHOX2a(2)                                 <---------AGP1                                 --------->ARR14(3)                                 --------->AGP1                                 <-----------ARR10                                 <---------ARR14(3)                                 --------->ARR14(2)                                 <---------ARR14(2)                                 --------->ARR11(3)        <---------HSFB2a(2)                                 <---------ARR11(3)        --------->HSFB2a(2)                                <---------CCA1(2)         --------->ETT(2)                               ----------->ARR10       <---------ANAC46                           --------->ANAC58            <---------DEAR3(1)                           --------->ANAC58        ------>NtERF2                         ---------->DOF2        --------->At4g35610                   ------>ZmHOX2a(1)            <---------At4g35610             <---------At4g35610                   =======================HOX2a_HOX2a  --------->DEAR3(1)    <------ZmHOX2a(1)                   ======================HOX2a_HOX2a <-----------HVH21     <---------TOE2(3)        <                  --------->TOE1(3)       <----------DOF2<------NtERF2 <----------DOF2          <<<<< --->ARR11(3)     --------->TOE2(3)------>ZmHOX2a(2)<---------ANAC46 <---------------AGL15   <<<<<<<<   attgagcgtcgtcttctcttccttagccaaagccagatctgcttctttttcgctgcgtcgtcgagaggtctctctttgaggaagctaattccttcttctt  9250000                                      <---------HSFB2a(1)                                      --------->HSFC1(2)                                      <---------HSFC1(2)                                      --------->HSFB2a(1)                                     --------->GLK1(2)                                 --------->ANAC58          --------->SPL7             <---------ARR14(2)                   --------->GLK1(2)        --------->LBD16              --------->ARR14(2)                  <---------GLK1(2)       <---------ANAC55(2)           <-----------ARR10                   --------->ARR14(2)       --------->ANAC46              <---------ARR11(3)                  <---------ARR14(2)     ------>MYB46(1)                <---------GLK1(2)                  <---------TOE1(2)     ------>MYB83                 --------->LBD16                      ----------->ARR10         <---   --------->AtMYB61             --------->HSFC1(1)                    <---------TOE2(2)   ------>ZmHOX2a(1) -----------GT1                  --------->HSFB2a(2)            --------->ATHB12       --------->ANAC58 <<<<TBF1<---------MYB52(1)      <---------HSFB2a(2) <----------DOF2<---------ANAC46 <---------ALFIN1 <TBF1 --------->ANAC55(2)      <---------LBD16<-----------GT1<---------WOX13(1)  ------>ZmHOX2a(1)   cttcaccatccgtaagtctttcaatctccatttttccagaatcttcgattttcttctttctccgattgattcgtagattctctcctcgcactccttctcg  9250100                                                                        <---------MYB59                                                                       <------ZmHOX2a(2)                                                                      <---------AGP1                                                                      --------->AGP1                                                                      <---------ARR11(3)                                                                      --------->ARR11(3)                                                                      --------->ARR14(2)                                                                      <-----------ARR10                                                                      <---------ARR14(2)                                                         --------->KAN4(2)                                      <---------ZAT18   <---------KAN4(1)                                      --------->ZAT18   <---------MYB46(3)            <----------DOF2      <---------ANAC58       --------->HSFB2a(1)  <----------DOF2      <-----------RAV1(1)        <---------ANAC46     <---------MYB52(1)------>ZmHOX2a(2)     <XXXXXXXXXXXXXXXXXXXXMIR397A<---------ANAC55(1)<---------YAB1   <---------CCA1(2)  <---------AHL20(2)     <---------LBD16         --------->ARR14(2)--------->HSFB2a(2) ------MYB52(1)      ------->TEIL<---------ANAC58<---------ARR14(2)<---------HSFB2a(2) <---------MYB46(3)   ttgttttaatgctgctttcgatgaatttggggattacttgtgaactattcagttccgattgttccgattccagatctaactttcgcgatttgttgaaatc  9250200                                                                               <---------ANAC46                                                                         <---------AHL20(2)                                                                        <---------YAB1                                                                      --------->ATHB12                                                                     --------->ICU4                                                                     <---------YAB1                                                            <---------At4g35610<---------ANAC58                                                 ----------->ARR10 --------->CCA1(2)          <------     --------->DEAR3(1)               --------->ARR14(2)    --------->At4g35610<---------ANAC58   tatttcgccgatgagaaatagtttgtttctagggtttttggattcactagtgagatttgtttagctaagagatgattaatggcgttttgttgattcgttg  9250300                                                                                       <---------ARR14(2)                                                                         --------->TOE1(2)                                                                        --------->ANAC46                                                                        --------->ANAC55(1)                                                                        --------->ANAC58 ------>ZmHOX2a(2)                                                                        --------->ANAC58<------ZmHOX2a(2)                                                                  ------>ZmHOX2a(2)    --------->ARR14(2)                                                                <---------ARR14(2)     <---------ARR11(3)                                                                --------->ARR14(2)     --------->AGP1                                                                <---------ARR11(3)     --------->ARR14(3)                                                                --------->ARR11(3)     --------->ARR11(3)                                                                <---------AGP1         <---------ARR14(3)                          <---------ZAT6                       <---------CCA1(2)   --------->ANAC46                     <---------ZAT2   --------->TOE2(3)      <---------HSFB2a(2) <-----------GT1                     --------->ZAT2<-----------GT1           --------->HSFB2a(2)<-------TEIL         ----------->GT1  ----------->GT1                   <---------LBD16    --------->CCA1(2)        --------->ALFIN1 <---------TOE1(3)           <---------HSFB2a(2)--------->ANAC55(2) ---MYB52(1)  --------->GLK1(1)  <---------ICU4      --------->HSFB2a(2)<---------ANAC55(2)   tgcttaacaagtggagaaatcgaagctagggttaatttttccttcattctttgttctggacttctggatcttatacgtaagattcacgagatcttcattc  9250400  Previous    Next  AGI:  At2g21590.1    Description:  APL4 (large subunit of AGP 4); glucose-1-phosphate adenylyltransferase. Identical to Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SIK1); similar to APL2 (large subunit of AGP 2) [Arabidopsis thaliana] (TAIR:AT1G27680.1); similar to APL3 (large subunit of AGP 3) [Arabidopsis thaliana] (TAIR:AT4G39210.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47595.1); similar to ADPglucose pyrophosphorylase large subunit [Solanum habrochaites] (GB:ABC26923.1); similar to ADP-glucose pyrophosphorylase large subunit [Lycopersicon hirsutum] (GB:AAD56405.1); contains InterP Range:  from: 9245562    to: 9249520    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g21600.1    Description:  ATRER1B (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1B). Identical to Protein RER1B (RER1B) [Arabidopsis Thaliana] (GB:O48671;GB:Q541D3;GB:Q9SIK0); similar to ATRER1A (Arabidopsis thaliana endoplasmic reticulum retrieval protein 1A) [Arabidopsis thaliana] (TAIR:AT4G39220.1); similar to unknown [Populus trichocarpa] (GB:ABK93662.1); contains InterPro domain Retrieval of early ER protein Rer1; (InterPro:IPR004932) Range:  from: 9249881    to: 9251913    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version