Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100      <---------YAB1  --------->AHL20(2)  <---------AHL20(2) --------->ICU4 <---------YAB1                                                                           <-------MYC3 -------HAHB4                                                                             ------->MYC3 ------->ATHB51                    <---------AHL20(2)                                    --------->TGA1a --------ICU4                     --------->AHL20(2)                            ------>NtERF2 -------YAB1                      <---------AHL20(1)                            --------->LBD16 ------>ICU4                      <---------AHL20(2)                           --------->ANAC46 ----------------->WRI1     --------->ANAC55(2)    --------->YAB1  <-----------GT1--------->DEAR3(1) ---->YAB1                  <---------ANAC55(2)   <---------YAB1--------->YAB1<---------LBD16 --TEIL           <---------CCA1(2)--------->AHL20(2)   <---------TOE2(3)   --------->ARR14(2)   ataattaatatcgcattcgtatatcgcaatacataatttaattctcaagttgatcatagaggttttttataacatttgtttccgccatcgcatgtgagtc  9241000                                                                                               <-----                                                                                            <--------                                                                                            ---------                                                                                           --------->ICU4                                                                                           <---------AHL20(2)                                   <---------REM1(2)                                       --------->AHL20(2)                                   <---------ZAT14                                   --------->YAB1                                 ------>ZmHOX2a(2)                                   --------->AHL20(2)                               <-----------ARR10           <---------ANAC58       --------->YAB1 <---                               --------->ARR14(2)          <---------ANAC58    <----------DOF2 ------          <---------YAB1       <---------ARR14(2)          <---------ANAC46    --------->TOE2(3)-----     <---------ANAC58      --------->At4g35610          <---------WOX13(1)  <---------ARR11(3)-------     <---------ANAC58      <---------At4g35610        --------->ATHB51      --------->ARR11(3)<------ <---------ANAC58          <---------ZAT2            <---------AHL20(2)--------->TOE2(3)   <---------ATHB51 <---------ANAC58    --------->ZAT6--------->ZAT14   <---------YAB1    <---------MYB59   --------->YAB1   agtgagtgcatgctgattcagtttcactaagctgatctacactgtgtaaatgtgtataattgcctatactatacctaaaatctttaataaaaaataatta  9241100                                                            <-----------GT1                                                   ------->MYC3                                                  <---------TGA1a                                                  ===================bZIP_DOF                                                  --------->TGA1a                                                  --------->O2                                                  ===================bZIP_DOF                                                  <---------O2                                      --------->AHL20(2)  <----------DOF2                                     --------->ICU4<-------MYC3 ----ICU4                            <---------ATHB51  <---------ANAC58 -ICU4                               <---------AHL20(2)<---------ANAC58 >YAB1                               --------->AHL20(2)<---------ANAC46       --------->ANAC58 ------YAB1                   ---------->DOF2    <<<<<<<<<<BZIP12             --------->ANAC58 --->YAB1                     ==============================bZIP_DOF        ---------->DOF2 ---->AHL20(2)            ---------->DOF2    ----------->HVH21            --------->LBD16 -->ICU4     --------->MYB52(1) ----------->GT1  <<<<<<<<<<ABI5          --------->HSFB2a(2)    ----- ---YAB1<----------ID1    ==================================bZIP_DOF     <---------HSFB2a(2)---------   taatccaaaaacgacaaacagtttcagtaaaagaaagaaataattttctgacacgttgcgttttacttcatttatccagaaagcaattgtgtccatgcta  9241200                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                   <xxxxxxxxxxxxxxxxx                                                                                  <---------ARR14(2)                                                                                  --------->ARR14(2)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                  <xxxxxxxxxxxxxxxxxx                                                                                 <------NtERF2                                                                                <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                <xxxxxxxxxxxxxxxxxxxx                                                                                --------->LBD16                                                                                <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                <---------RAP2.6(3)                                                                               --------->LBD16                                                                               --------->RAP2.6(2)                                                                               <xxxxxxxxxxxxxxxxxxxxx                                                                               --------->HSFB2a(2)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(se3)                                                                              <---------LBD16      --                                                                    <---------ARR14(2)       --------                                                                    --------->ARR14(2)    --------->TOE1(2)                                                                    --------->GLK1(2)    <xxxxxxxxxxx                                                                   --------->RVE1(1)<xxxxxxxxxxxxxxxx                                                           ----------->HVH21  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                                          <-------MYC3        <xxxxxxxxxxxxxxxxsmallRNA(s)                                                          ------->MYC3       --------->MYB52(1)  <---                                                         --------->TGA1a     ------>MYB83<xxxxxxxxxxx                                                         <---------ANAC55(2) ------>MYB46(1)<xxxxxxxx                                                         <---------ANAC58    <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         --------->O2      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                         --------->ANAC58  <xxxxxxxxxxxxxxxxxxxxxxxxx                                                         --------->ANAC55(2) <xxxxxxxxxxxxxxxxsmallRNA(s)                                                         --------->ANAC46  <xxxxxxxxxxxxxxxxsmallRNA(s)                        --------->AHL20(2)               <---------ANAC46 <xxxxxxxxxxxxxxxxsmallRNA(s)                    --------->AHL20(2)                   --------->ANAC58 --------->ZAT2 --------->MYB46(3)                    <---------AHL20(2)                   <---------ANAC58 <---------ZAT2<xxxxxxxxxxxx          --------->ZAT14                                <---------TGA1a  <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)          <---------ZAT18                                <---------O2    <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)          --------->ZAT18                                --------->bZIP60(1) <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)       <---------At5g28300                               --------->bZIP60(2)<xxxxxxxxxxxxxxxxxxxxxxxx      <-----------GT1--------->AHL20(2)              <-----------HVH21   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) ---------->DOF2 --------->AHL20(2)       <-----------GT1<---------bZIP60(2)<xxxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->MYB52(1)  --------->AHL20(2)   <---------AHL20(2)  <---------bZIP60(1)<xxxxxxxxxxxxxxxxsmallRNA(s) >AtLEC2  <---------ZAT14            --------->AHL20(2)------------->DYT1<xxxxxxxxxxxxxxxxsmallRNA(s)   agggaaagttactgcacaataaataaataaaaacaatttttaaataacatttttgtgtcacgtgacaaaaaatccgacctgccggaatcgaaccagcgac  9241300                                              <---------AtMYB61                                              <---------TOE1(3)                                          --------->At4g35610                                          <---------At4g35610                                         <xxxxxxxxxxxxxxxsmallRNA(fl3)                                        <xxxxxxxxxxxxxxxxsmallRNA(i)                                        <xxxxxxxxxxxxxxxxsmallRNA(s)                                       <xxxxxxxxxxxxxxxxsmallRNA(s)                                       <xxxxxxxxxxxxxxxxsmallRNA(i)                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                       <xxxxxxxxxxxxxxxxxsmallRNA(se3)                                      <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <xxxxxxxxxxxxxxxxxxsmallRNA(le3)                                      <xxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                      <xxxxxxxxxxxxxxxxxxsmallRNA(si3)                                      <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     ----------->RAV1(2)                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                     ------>MYB46(1)                                     ------>MYB83                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                     <xxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                     <xxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                    <xxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                    --------->MYB52(1)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                    <xxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                    <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)                                   <---------MYB111(1)    <-------TEIL                                   <xxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                   --------->MYB46(3)   *TSS    <---------ANAC55(2)                                   <xxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                 <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <---------MYB111(1)<xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)             <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    <---------KAN4(2)             --------->MYB46(3) <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)     <---------MYB52(1)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)    <------MYB46(1)    <------ZmHOX2a(2)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   <---------ARR11(3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2)   --------->ARR11(3)           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxsmallRNA(le3)            <xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxsmallRNA(si3)             <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) xsmallRNA(si3)                 <xxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxsmallRNA(si3)                <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2) -------->DOF2                 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) ->DEAR3(1)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   <---------DEAR3(2)<---------ICU4 xxxxxsmallRNA(i)             <----------DOF2 <---------TOE2(3) <---------ANAC46 xxsmallRNA(se3)  <---------ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)<------------CBF ------MYB59xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <------MYB83 --------->ANAC58 xxxxxxxxsmallRNA(le3)       <xxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)--------->ANAC58 xxxxxxxsmallRNA(le3)    xxxxxxxxxxxxxxxxxxxx>smallRNA(si3)<---------ICU4                           < xsmallRNA(fl3)   --------->ZAT14<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)--------->ATHB51             --- xxxxxxxxsmallRNA(le3)xxxxxxxxxxxxxxxx>smallRNA(s)--------->MYB59 --------->YAB1               ------ xsmallRNA(se3)  xxxxxxxxxxxxxxxxxx>smallRNA(si3) --------->MYB46(2)<---------YAB1  <---------MYB52(1)   ctaaagatcacagcaactactacagtcttccgctctaccaactgagctaaggtcggtatgttcattacgcataattgtattcaaccgttatttagactta  9241400                   --------->ZAT6                  <---------TOE1(3)           ------>ZmHOX2a(2)          <------ZmHOX2a(2)         --------->ARR14(2)         <---------ARR11(3)         <---------ARR14(2)         --------->ARR11(3)        --------->GLK1(1)        <---------GLK1(1)     --------->DAG2                                      ---------->DOF2      <------ZmHOX2a(1)      ---------->DOF2       ----------->GT1         <-------TEIL ---------YAB1    <---------TOE2(3)                <------MYB46(1)        --------->CCA1(2) ------>YAB1     <-----------GT1                   <------MYB83          --------->ARR14(2)   <------ --->YAB1--------->AGP1   --------->ANAC46  <---------ZAT14              <---------ARR14(2)  --------   taatgctaggagatctatttaacgctagacgtaaagctcatgggactatagggaggtttcatccatatacaagaagattcacataaaagttttagataca  9241500                                             --------->HSFB2a(2)                               <------MYB46(1)        ---------->DOF2        <------MYB83  <---------HSFB2a(2)              <---------YAB1 -TEIL--------->YAB1          --------->MYB59--------->HSFC1(1)        <---------MYB59            --- ->CCA1(2)       <---------AHL20(2)          <---------HSFC1(1)  <---------ICU4      <---------ARR14(2)   gaatgcattcaaaagtcatttttttttaaaattaggtcaatagttttctagaaaaaatcgaatgaattcattaccaaaatatgagtgtatatgaattcac  9241600                                --------->AHL20(2)                                <---------AHL20(2)                               --------->AHL20(2)                              <---------AHL20(2)                            <---------YAB1                           <---------AHL20(2)                                       <---------YAB1                         <---------AHL20(2)                                        --------->AHL20(2)                         <---------YAB1           <---------AHL20(2)               --------->AHL20(1)                      --------->ARR11(3)    <---------AHL20(2)      --------->AHL20(2)                      <---------ARR11(3)    --------->AHL20(2)     <---------YAB1  <---------AHL20(1)                     --------->YAB1   --------->ANAC55(2)        <---------AHL20(2)<---------AHL20(2)                 <---------AHL20(2)   <---------ANAC55(2)       --------->AHL20(2)--------->AHL20(2)                --------->AHL20(2)  <-----------GT1             --------->ICU4    --------->YAB1    < ------>AHL20(2)<---------AHL20(2)  --------->AHL20(2)       --------->AHL20(2)--------->WOX13(1) <--   ttaaattgtatcacaaaattaaatgatattattttaaattacatatttatattttaaaaacaaatatttattatttagtatcaattatattaactgatat  9241700                                                  --------->ZAT14                                              <---------ALFIN1                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                          ------>MYB83         <-----------GT1                  ------>MYB46(1)   ------>ZmHOX2a(2)            <-----------GT1   <---------ZAT14  <------ZmHOX2a(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 --------->YAB1 --------->ARR14(2)         <xxxxxxxxxxxxxxxxxxxxsmallRNA(le3)                  --------->ANAC58 <---------ARR14(2)         <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------ANAC58          --- --------->GLK1(2)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)        <---------ANAC46          <-- <---------AGP1           <-------TEIL  <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(i2)    <---------ANAC55(2) < --------->ARR11(3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)           <---------ANAC58         <--- <---------ARR11(3)xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)          ------- ------ZmHOX2a(1) ----------->GT1    <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->ANAC58 ---- -------TOE2(3)   <---------MYB46(3) <-----------GT1 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)    <------   aaggatctgttttactcaagtggttaagtccatttgacttcaccttccccactgaagttcgactctactaaattgcgttatcacgcataatagagattaa  9241800                                                                          <---------ICU4          <----------DOF2                   <-----------GT1               --------->ATHB12  <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3) --------->AHL20(1)                 -------->HAHB4  --------->ATHB12                     <---------AHL20(1)                <---------YAB1 ----->HAHB4                           <---------AHL20(2)            --------->AHL20(1) -------ICU4                           --------->AHL20(2)            --------->AHL20(2) ---------TOE2(3)                      --------->ARR11(3)            <---------AHL20(2) ------ATHB51                          <---------ARR11(3)       --------->AHL20(2) -->AHL20(2)                        --------->AHL20(2)      --------->ZAT14 ----->ICU4        --------->AHL20(2) --------->AHL20(2)    <---------ZAT14 ---AHL20(2)  ---------->ID1      --------->AHL20(2)    --------->ZAT6   --------->ICU4   ttatggattggactttgtcgattaaaaaatatcaaaaaaaatatattaacagatgtttacagtaaactaaataaaatgattccatttctattagtttgta  9241900  Previous    Next  AGI:  At2g21570.1    Description:  pre-tRNA. tRNA-Tyr (anticodon: GTA) Range:  from: 9241320    to: 9241356    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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