Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    <--                                                                                                 <---                                                                       <-----------HVH21         <---                                                                       <-----------TGA1          ----                                                                      --------->bZIP60(2)        <---                                                                      --------->ANAC46           ----                                                                     ------>ZmHOX2a(1)          -----                                                                     ================================                                                                  ------>ZmHOX2a(1)             <----                                                               <xxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)----                                 <---------WOX13(1)           ------->TEIL                     ------      <<<<<<<<<TBF1             >>>>>>>>>ARR2                 --------->ARR14(2)            <--------   <<<<<<<<<TBF1               --------->ATHB12               <---------ARR14(2)    <---------ZAT18 -----ARR11(3)                <---------YAB1           ------>ZmHOX2a(1)            --------->ZAT14-- ---->ARR11(3)              <----------DOF2       <---------GLK1(1)  ================================ ->DOF2         ----------------->AGL3            --------->GLK1(1) <---------ALFIN1--------->ZAT18--   tcttcttcttcttctgcatccacatatagactttgattgtcaatatcagtagaattcctcgatgaatcctcctcgtcataaccttgtggactcgagtcag  9189000    --------->At4g35610    <---------At4g35610 ------>ZmHOX2a(1) ----ZmHOX2a(2) ------GLK1(2) ------ARR11(3) ----->AGP1 ------ARR14(2) ----->ARR11(3) ---->At4g35610                                                                                <----- ====HOX2a_HOX2a                                                                             -------- -----At4g35610                                                                             <-------- ----->ARR14(2)                   <---------ANAC58                                          --------- ----->ARR10                      <---------ANAC58        --------->HSFB2a(2)           ---------->DOF2 ---HVH21                  <---------ATHB12               <---------HSFC1(1)         --------->YAB1 ---->ZmHOX2a(2)         --------->YAB1<---------At4g35610<---------HSFB2a(2)       <------ZmHOX2a(2) =====HOX2a_HOX2a        --------->WOX13(1)        <----------DOF2                 --------->ARR11(3) --------->RAV1(2)      --------->MYB46(3)        <---------DAG2 ----------->GT1   <---------ARR11(3)   atcctgagctatctccattcttcacaacaatcacttccttgagcttcttcagccttttttctagaggctgaaaaatgcaaaacgagatcataaagattta  9189100         ---------->DOF2                                                            --------->YAB1       --------->MYB46(3)                             <---------YAB1               <---------YAB1     ----------->RAV1(1)              --------->AHL20(2)                 ----------->RAV1(2) ----AHL20(2)            --------->YAB1<---------AHL20(2)            <-----------TGA1     --------->ARR11(3) ->CCA1(2)              <---------AHL20(2)        <------------MYB.PH3(1)<---------At4g35610 -ARR11(3)             --------->AHL20(2)       --------->MYB52(1)   <-----------HVH21  <---------TOE2(3) >ARR11(3)       <-----------GT1    --------->TOE2(3)<---------GLK1(2)   --------->At4g35610  <------   aacttggcaacaaaagatgaaaccatataataaacaaacattaatttgagtaactgattcttgaggcaactcgtcatctgaatcgatgataagattatga  9189200                   <---------ANAC58                   <---------ANAC58               ---------->ID1               <---------ATHB12                --------->At4g35610              <-------GAMYB        --------->ARR11(3)                       --------->ZAT2             --------->MYB55(2)    --------->ARR14(2)                 <-----------HVH21             --------->MYB52(2)    <---------ARR11(3)                ------>ZmHOX2a(1)    ===========             <---------MYB46(3)   <---------CCA1(2)      --------->AtLEC2   <---------At4g35610    -- ---YAB1   <---------MYB52(1)     <---------GLK1(1)   --------->MYB46(3)    <---------ZAT2<----------DOF2   gaagacttggctcgtttgttgtcttgtctagcttcgatatcttccaatgagatggaaccattcaaatattcctgtctcagcttacaaagtctctttacat  9189300                                                  --------->ETT(2)                                            --------->GLK1(2)                                            --------->CCA1(2)                                            --------->ARR14(1)                                           --------->ARR14(2)                                           <---------ARR14(2)                                           --------->ARR11(1)             --------->LBD16               <---------GLK1(2)            <---------ANAC46              <---------HSFB2a(1)           <-------TEIL                  ----------->ARR10        --------->TGA1a      --------->ANAC58     <---------ETT(2)             --------->ARR11(3)        ==============================bZIP_DOF--------->MYB59      <---------ZAT18        <---------TGA1a      --------->ANAC58<-------TEIL         <------ZmHOX2a(1) =================bZIP_DOF ---------->DOF2<---------GLK1(1)    <-----------RAV1(2)                 -- ------->At4g35610<-----------GT1  <---------ATHB12          <-----------HVH21 <---------ARR11(3)----   catcagcaagacgtccgtataaaccatcttcaagcccatcaaggagattcggtagacagaatgggtcaggacgcttggcaagttcttcttgagtaatgct  9189400          --------->TOE2(3)          --------->TOE1(3)      ----------->HVH21    <---------ANAC46    <---------ANAC55(2)    <---------ANAC58    --------->ANAC55(2)    <---------ANAC58    --------->bZIP60(2)    --------->O2                                  <---------ICU4               ----------->RAV1(1)    <---------O2                            ----------->GT1               <---------At4g35610    --------->TGA1a                <---------YAB1--------->ICU4           --------->At4g35610    <---------TGA1a               --------->TOE2(3)                  --------->DAG2         <-------- ---->ZmHOX2a(1)      --------->ZAT2    --------->MYB52(1)         ---------->DOF2      ----------->GT1 ------->RAV1(2)      <---------ZAT2    --------->YAB1    --------->At4g35610--------->At4g35610   cctgctacgtgaccttaaattccaagctgtgaacatcatcaataacgagtaaaaattagaagcagaaacaaaaggcatcagcaccaaaatgggtttaatt  9189500                                                       ---------->DOF2                                                      <------ZmHOX2a(1)                                          --------->TOE2(3)               ---------->DOF2          --------->GLK1(2)--------->ANAC58          --------------->AGL15         --------->ARR11(3)         ----------------->AGL2         <---------ARR11(3)     <---------MYB52(2)    <---------AHL20(2)  --------->MYB46(3)                <---------ZAT6 -AHL20(2)<---------------AGL15         <-----------ARR10--------->ANAC58  ------->TEIL   tcttcaaacaaacccaaaaaagaaacgatttttttagttgaaaatctcaaccactaggaaagctacagccagaaatgaacttagtggaaaacaaaacccc  9189600                                   --------->GLK1(2)                     <------------CBF                                                         -------                    --------->ATHB12          <----------DOF2                          --------->ZAT18                    --------->ATHB51<-------TEIL                                  --------->CCA1(2)                   <---------YAB1  --------->ARR14(1)                            --------->ARR14(2)           --------->YAB1         --------->ARR11(1)                             <---------GLK1(2)          <---------ATHB12        <---------GLK1(2)      --------->ANAC58 <----------DOF2 --------->ANAC58          <<<<<<<<<ARR2           --------->ARR14(2)     --------->ANAC58<---------ANAC58 --------->ANAC46      ------------>CBF       --------->MYB52(1)          --------->AtLEC2<---------ANAC58 --------->ANAC58  <---------YAB1 --------->YAB1   <---------ARR14(2)  <---------ATHB12  ---------->ID1 <---------ZAT18   atgtatgatacaatcaaaaacataattgaatcaacagattcggtttagctttagaaatcatgcaaaacccatttggctttttagatttgcacactcaaaa  9189700                 <---------------AGL15                 --------->TOE2(3)                 --------------->AGL15                ----------------->AG              --------->ANAC58                ----------------->AGL3            --------->ANAC58                ----------------->AGL2            --------->ANAC46                      --------->CCA1(2)   ------->TEIL ----------------->AGL1        <-----------HVH21                    ---------->DOF2  <---------CCA1(2)                        <----------DOF2                 <---------HSFB2a(2) --->DOF2    <----------DOF2         ----------------------->TaNAC69(2)    --------->HSFB2a(2)<------   gtctgaatctttgaactttccataaacagagagactaatcttcttctttgtcacaccattgaacaacaagagaggttacagaagaaaaagaaacgagtgt  9189800                                                             <---------YAB1                                                         ------>MYB83------>ZmHOX2a(2)                   <---------CCA1(2)                     ------>MYB46(1)                           --              ------->TEIL                              --------->ANAC46                           --              <-------TEIL                             <---------MYB111(1)                    -------            --------->TOE1(2)                          --------->MYB46(3)                 ---------->DOF2            <---------SPL7                             <---------MYB55(2)          --------->GLK1(1)            --------->TOE2(2)                        <---------ZAT18 ==========================HOX2a_HOX2a          --------------->AtSPL3                 <---------------AtSPL8            <---------At4g35610       <---------AHL20(2)                        --------------->AtSPL8            <---------GLK1(1) ----------->GT1 --------->ANAC46                <---------ICU4    <---------ARR11(3)   ------>ZmHOX2a(1) ---ZAT6  <---------------AtSPL3              --------->ATHB12     --------->ARR11(3)  --------->TOE2(3)   aagtagtatataaacgtacgcgtctctctcggcttcgaaaatgaaaactgattagtacccaccatgtttgatcttcgctaaacagagctccttaaatcaa  9189900  Previous    Next  AGI:  At2g21450.1    Description:  CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase. similar to DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1), ATP binding / DNA binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G16390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47208.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21271.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62867.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (In Range:  from: 9186490    to: 9189436    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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