Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                      --------->ALFIN1                                                                 <---------DEAR3(1)                                                                ------>NtERF2                                                                <---------LBD16                                                               --------->DEAR3(1)                                                            <---------ARR14(2)                                                            --------->ARR14(2)                                                       --------->ANAC46                                                     --------->MYB52(1)                                                   <---------MYB52(2) <----------DOF2                                   --------->MYB46(3)                               < <---------DAG2                                --------->AHL20(2)<------NtERF2                      = --->YAB1                              <---------ANAC58--------->ANAC58                            <- ---YAB1                         --------->ATHB12<-----------GT1--------->LBD16   --------->AtLEC2 -- --ARR11(3)      <---------ARR11(3)    <---------ANAC58--------->ANAC58   <---------At4g35610     --- ->ARR11(3)      --------->ARR11(3)   --------->At4g35610 ---------->DOF2 --------->At4g35610  ------   tcacttttcccagtaagaagatagttttcaacaagtgattagcttacaatttaacaaacgcaaagccgcggtgttcatcagaccctgcaaaatcaaacaa  9185800              --------->LBD16     --------->TOE2(3)    <--------HAHB4    --------->ATHB12       --------->YAB1    <---------ICU4        <---------YAB1   --------->ICU4       --------->ATHB12   <---------YAB1      --------->ICU4                                                          ------ --------->YAB1        <---------YAB1                                                        -------- ------ZmHOX2a(2)    --------->YAB1                                                          -------- ====================HOX2a_HOX2a                                       <----------DOF2      >>>>>>>>>MYB2 --------ARR11(3)  --------->ANAC58                                   --------->TOE2(3) --------->ANAC58 ------->ARR11(3)  --------->ANAC58                           <---------GLK1(2)         --------->ANAC58 ------>YAB1  ------>ZmHOX2a(1)                         --------->bZIP60(1)           ---------->DOF2 ---->DOF2  ----------->RAV1(2)                         <---------bZIP60(1)    ----------->HVH21 ----   agatcatcattagctcctgataagcatgattataacttaaaaacttcaatttgtagtgacatcaaattctcacctttatttgtgaccagaaagcaacgcc  9185900                                                                                     <---------At4g35610 ----->RAV1(2)                                                         <-----------HVH21           -- ->ANAC58                     --------->At4g35610              <-------TEIL          --------->At4g35610 ->ANAC58  --------->ZAT14    <---------At4g35610             --------->CCA1(2)   <---------At5g28300 ------->HVH21  ---------->DOF2                           --------->YAB1         <-----------GT1   <-   tgactgggccaacttcactaaaggcttcttcaagctgaaaccatttgaagattacaccaataagattcaaaaatgtcatcgatttacagctctccaatcc  9186000                                                                                              -------                                                                                             --------                                                                                            ---------                                                                                          <---------ANAC46                                                                                      --------->At4g35610                                                                                      <---------At4g35610                                                                                      <------NtERF2                                                                                      --------->ATERF1(1)                                                                                     <---------RAP2.3(1)                                                                                     ------>NtERF2                                                                                     <---------ATERF1(1)                                                                                     <---------ERF1                                                                                    <---------RAP2.3(3)                                                                                    <---------ANAC46<                                                                                    <---------RAP2.6(2)         <-----------GT1                                                            <---------RAP2.3(2)       <---------HSFB2a(1)                                                          <---------DEAR3(1)       --------->HSFC1(2)                     <------MYB83                          <---------ATERF1(2)       --------->HSFB2a(1)                    <---------MYB46(3)        --------->ANAC46  <---------ANAC58       <---------HSFC1(2)                     <------MYB46(1)           --------->ANAC58  <---------ANAC58      --------->ARR14(2)                     <---------DEAR3(1)      --------->ARR14(2)<---------DEAR3(1)      <---------ARR14(2)     ---------->DOF2 <---------AtMYB61 --------->ANAC58     --------->ATERF1(2)  --------->ANAC46      <------ZmHOX2a(2)  <-------GAMYB       --------->ANAC58    --------->RAP2.6(3) ------->MYB46(3)     <------ZmHOX2a(1)   <---------ANAC58<---------TOE2(3)      --------->ALFIN1   - --------MYB55(2) ---------->DOF2         <---------ANAC58--------->DAG2--------->ANAC58 <------NtERF2   aaacaccgaattttcgattcaaaaggatcaacaaaggtacctgtgcgttggtgatggaataaggcaagccagagacgcaaacagtggcggcagcgtgtgg  9186100                                                                                               ------                                                --------->TOE2(3)                              ------ -->ALFIN1                                      --------->TOE1(3)                             <<<<<<< ->REM1(2)                         <-----------GT1                                            <<<<<<< >ALFIN1       <----------DOF2     ---------->ID1                          <---------YAB1<-----------GT1 ---------GLK1(1)                 <-----------GT1                ------->GAMYB   <---------TOE1(3) -------->GLK1(1)   ------>ZmHOX2a(1)      --------->YAB1     --------->MYB52(1) <---------TOE2(3)   agatttctcttctccatctttcctctctctcttgtttttccccattgataccttaagactgactcaaccgagagattacgattagggtttttcacaatct  9186200                                  <---------At4g35610                                  --------->At4g35610                                              -- <---------AHL20(2)          --------->At4g35610                                                   -- --->TOE2(3)                 --------->ZAT2                                                      ---- --->YAB1                    <---------At4g35610        --------->GLK1(1)  <---------AHL20(2)   ----- <<ARR1                 <------ZmHOX2a(1)     *TSS  >>>>>>>>>TBF1         --------->AHL20(2)    ----- <<ARR2            --------->CCA1(2)         <---------ANAC46        <<<<<<<<<GATA-1          <------   tattttttgagttgcagagagatagaggaagagctgagctcaagatgatgtgaagaagaaatctagggtttatctattaaatcactaaacccatgttaac  9186300       --------->LBD16       ----------->GT1                        <---------DEAR3(2) ---->MYB83                                   <------MYB46(1)                  <---------YAB1 ---->MYB46(1)                                <---------MYB46(3)             <-----------GT1 --->GAMYB  <---------AHL20(2)                <------MYB83              --------->AHL20(2) ---->MYB46(3)                               <---------DEAR3(1)         <---------AHL20(2)         <- ---->DEAR3(2)                    --------->SPL7                   <---------AHL20(2)<----------DOF2 -----GT1  --------->AHL20(2) <---------------AtSPL3    <-----------GT1<---------AHL20(2)     <------   cgactaatccagataaaattactccgaatcgaatggtacgatttgggtcggttcaatttttcggtttagtttatttattttactattcttttttggcatt  9186400                                                                                             --------                        <---------YAB1          --------->AHL20(2)                          ---------                       --------->AHL20(2)       <---------AHL20(2)                      --------->HSFB2a(2)   ------>ZmHOX2a(2)   <---------AHL20(2) ----------->GT1                               <---------HSFB2a(2) --------ZAT6  <---------At5g28300    ---------->DOF2              ------->TEIL      <-----------GT1 ----DOF2     <-----------GT1  --------->ANAC46 <---------YAB1  <---------ATHB12  <---------ICU4   agtgatcggttttattttactgtatttttataaactcaacaaaagtgtatataattgaaaattcaaatgaatataaactcaaaatttttactagaaaagt  9186500                                  <---------ARR14(2)                                  <---------GLK1(2)                                  --------->ARR14(2)                                --------->LBD16                              <---------LBD16                    --------->MYB46(3)                   --------->ANAC58           --------->MYB46(3)      <-------TEIL --------->ANAC58       --------->WRKY12  <-------TEIL       <---------CCA1(2) ->DAG2          --------->MYB46(3)--------->GLK1(2)       --------->GLK1(2)<-------TEIL ->DOF2  ---------->DOF2     --------->MYB52(1)   --------->MYB46(3)    --------->MYB59          <---   gtttcagattcaaaagaaaacaaccaatagaaaccggaatctcgttgaaccatcaaacgagattcaatttcaattcggttcatctcttaaacccaaatgt  9186600                                                                --------->ARR11(3)                                                                --------->ARR14(2)                                                                <---------ARR14(2)                                                               --------->CCA1(1)                                                               --------->RVE1(1)                                                          --------->ANAC58                                                          --------->ANAC58                                --------->AHL20(1)        --------->ANAC46                              --------->ARR11(3)        --------->MYB52(1)                              <---------ARR11(3)        ------>MYB46(1)                              --------->AHL20(1)      --------->MYB46(3)                              --------->ICU4          <---------MYB59                         <---------YAB1            <-----------GT1<---------LBD16                    --------->DAG2                 >>>>>>>>>>WRKY38                   ---------->DOF2                 >>>>>>>>>>WRKY43           ----------->GT1              <---------------AGL15      <---------YAB1 ------>MYB83      <-----------GT1              --------------->AGL15 <---------YAB1 >>>>>>>>>>WRKY26 ----------->GT1  ------------>MYB.PH3(1) ------ETT(2)--------->TOE2(3)<---------AHL20(1) <---------WOX13(1) --------->LBD16<---------YAB1 <--   ctacaaaatataaaaacttaaaaaagtatgaaaatattatgttatcatctaattgaccaaacgaaatatccggtttaaaccggttataatcggttatcaa  9186700  Previous    Next  AGI:  At2g21440.1    Description:  RNA recognition motif (RRM)-containing protein. similar to SCL28 (SC35-like splicing factor 28), RNA binding [Arabidopsis thaliana] (TAIR:AT5G18810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47212.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 9180640    to: 9186246    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g21450.1    Description:  CHR34 (chromatin remodeling 34); ATP binding / DNA binding / helicase. similar to DRD1 (DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1), ATP binding / DNA binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G16390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47208.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21271.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN62867.1); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (In Range:  from: 9186490    to: 9189436    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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