Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                              ========================HOX2a_HOX2a                                                            ------>ZmHOX2a(2)                                                           =========================HOX2a_HOX2a                                                           <------ZmHOX2a(2)                                                          <---------ARR11(3)                                                       --------->LBD16                                                       ------>NtERF2                                                      --------->RRTF1(3)                                                      --------->RAP2.3(2)                                                      --------->DEAR3(1)                                                     --------->RAP2.3(1)                                                     --------->ATERF1(1)                 <---------YAB1                                                    <---------ATERF1(1)               --------->GLK1(2)                                                    ------>NtERF2                    --------->ARR11(3)                                                   <---------DEAR3(1)                <---------ARR14(2)     --------->YAB1                                --------->ANAC46                  <---------GLK1(2)     <---------ICU4                              --------->DEAR3(1)                  --------->ARR14(2)    <---------YAB1                               ------->GAMYB                      --------->HSFC1(2)  <---------ICU4                                --------->MYB46(3)                  <---------HSFC1(2) <---------YAB1                                 <------------AtMYB77            --------->LBD16 --------->ICU4            ----------->RAV1(2) <---------At5g28300             --------->ANAC46 --------ICU4            <-----------GT1      <-----------GT1                  --------->HSFB2a(2) -------YAB1       <---------WOX13(1)         --------->MYB52(1)               <---------HSFB2a(2) ------>ICU4     --------->ATHB12             <---------ARR14(2)              <---------LBD16 -----TGA2(1)   <---------YAB1                --------->ARR14(2)             ------>ZmHOX2a(1)  ----- ---->bZIP60(1) --------->ICU4               ----------->HVH21       --------->YAB1----------->ARR10 -----bZIP60(1)<---------TOE2(3)       --------->ANAC46<------NtERF2<---------ATHB12<---------HSFB2a(1) ---->TGA2(1) --------->YAB1          <---------LBD16<------NtERF2--------->WOX13(1)--------->HSFB2a(1)   atcattatcatcacattgatgattgaattacctggtttttcacgggagtaaccgcgccgcgatctctccaatcaaactcctccggaagattctgagtagg  9180000                                                                                                  <--                                                                                        --------->LBD16                                                                                      ------>ZmHOX2a(2)                                                                                     --------->CCA1(2)                 <---------ANAC58         <----------DOF2                            <------ZmHOX2a(2)                 <---------ANAC58      ------>MYB46(1)                              <---------ARR14(2)        <---------ANAC58               ------>MYB83                                 --------->AGP1<--        <---------ANAC58      --------->TOE1(3)                                     --------->ARR14(2) --------->ARR14(2)          <---------At4g35610                                   --------->At4g35610 <---------ARR14(2)       <------ZmHOX2a(1)                      --------->LBD16   <---------At4g35610 --------->GLK1(2)   <----------DOF2  <---------ALFIN1          --------->ANAC46  ----------->ARR10 ------>GT1--------->ATHB12  --------->At4g35610          <----------DOF2      <-----------HVH21 <---   gagaatcggggcttgattagcgtctttaggaagcttaaacccacctttaacccctaaatgctttctccgaaactcagaacgagtcagatccgaaaactgc  9180100                      <-------TEIL  --------->ANAC58                      ===================================HOX2a_HOX2a                     ====================================HOX2a_HOX2a                     <------ZmHOX2a(2)                    <---------ARR14(2)                    --------->ARR14(2)                                            <---------ICU4                   <------ZmHOX2a(1)--------->ANAC55(2)    <----------DOF2        -------->HAHB4         <---------ANAC46        ----------->TGA1     --------->CCA1(2)           --------->YAB1       --------->REM1(2)         ----------->HVH21   <---------ARR14(2)          <---------ATHB51      ----------->HVH21       --------------------->WRI1  <---------ANAC58       --------->ICU4     <-----------HVH21------>ZmHOX2a(2)         <---------TOE1(2)              --------->YAB1       - --------->ANAC58 <---------HSFB2a(1)          <-----------RAV1(2)       --------->GLK1(2)          - --------->ANAC58 <---------HSFC1(2)<---------ANAC55(2)   <---------ANAC58  ----------->GT1         - -------MYB52(1)  --------->HSFC1(2)--------->ANAC58 --------->ARR14(2)  <---------ARR14(2)      ---- -------SPL7--------->At4g35610<---------At4g35610<------ZmHOX2a(1)      --------->ARR14(2)      <--- --------HVH21    --------->HSFB2a(1)  ------->TEIL----------->ARR10    <---------GLK1(2) ------>ZmHOX2a(1)   gttacgccgtgacgagcagaaggatccatcttctggtgacgcatcgctcgcaggagatttgctttgaaaacagagaatctgtaataatgctcctcaatgg  9180200                                               --------->At4g35610                                            ------>ZmHOX2a(1)                                   --------->DAG2                                    <---------ANAC58 --------->At5g28300              ---------->DOF2                                    <---------ANAC58 -------->TOE1(3)                 --------->ZAT14                              <---------ALFIN1 ---------->GT1                   <---------ZAT14----------->HVH21            --------->MYB46(3) -------->TOE2(3)              ----------->GT1 <---------At4g35610           -------->P ----->ARR14(2)        <---------HSFB2a(2) --------->TOE1(2)                --------->WOX13(1) ------ARR14(2)        --------->HSFB2a(2)------>ZmHOX2a(2)                --------->MYB46(3) <------   aaccgtaaaccttgccgaatttcttcttgaagagagtaaagtgatcctccgatgacaaaactttcggctctgtttcatcaaccacttgcctgatcaacac  9180300                                                                                            ---------                                                                                            <--------                                                                        --------->GLK1(2)--------->AHL20(2)                                      --------->CCA1(2)             --------->YAB1       <---------AHL20(2)                                    --------->YAB1                 <---------YAB1<---------DAG2 ---ALFIN1  --------->MYB52(1)   ---------->DOF2                 --------->YAB1  <----------DOF2   atcttcgtctccacaaaccgaaacagagacgaacacaaagataagagaaacagagaacaaaaccctaagatgataatccatgactttttaaaaaattatg  9180400                                                                                            ------->MYC3                                                                                            <-------MYC3                                                                                            <-------MYC4                                                                                            ------->MYC4                                                                                            ------->PIF5                                                                                            <-------PIF5                                                                                            <-------MYC2                                  --------->ARR11(3)                                       <---------O2                                  <---------ARR11(3)                                       <---------TGA1a                               --------->AHL20(2)                                          <---------ANAC55(2)                               <---------AHL20(2)                                          <---------ANAC46                        <---------AHL20(2)                                                 --------->O2                    ----------->GT1                                       --------->MYB46(3)------->MYC2                   *TSS--------->AHL20(2)    --------->ANAC58    <---------DEAR3(2)   ----------->HVH21             --------->ZAT2 --------->AHL20(2)     ----------->GT1        ------------>CBF --------->TGA1a             <---------ZAT2--------->AHL20(2)--------->ANAC58  --------->SPL7    <---------YAB1 >ICU4       --------->At4g35610  --------->AHL20(1)         <---------SPL7    --------->YAB1 -ATHB51     <---------At4g35610  <---------AHL20(1)         ----------->HVH21<---------ATHB12   gagagaagaaaacagagctgagggattaaataaaaaaatattcgaagacgaaatcgaaaaaatcggacggtttggaaccaatgataatttgacacgtgga  9180500                                                                   <------------MYB.PH3(1)                                                                  <---------At5g28300                                                                 <-----------GT1                                                                 --------->MYB52(1)                                                               <---------MYB52(2)                                                          <---------ANAC55(2)                                                          <------MYB46(1)                                                          <------MYB83                                                          ----------->GT1                                                     --------->MYB46(2)                                                     <---------MYB46(3)                                                     --------->MYB111(1)                                        --------->ANAC46 --------->MYB46(2)                                       <---------LBD16   --------->MYB59                                       --------->SPL7--------->MYB52(2)                                  --------->ANAC58   --------->MYB111(2)                                <---------ALFIN1     --------->MYB55(2)                   --------->ICU4 --------->ANAC46  <---------MYB55(1)                       <-------                   <---------ANAC46  --------->DEAR3(1)  --------->MYB111(1)       <---------MYB59                   <---------YAB1 --------->ANAC58 <---------MYB52(1) <---------MYB52(1)     <-------      <---------ANAC46  --------->MYB52(2)   <---------HSFB2a(1) ------------>MYB.PH3(1)    ---------   ----------->HVH21 ----------------------->TaNAC69(2)<---------MYB52(1)     <----------DOF2--------   aatgtatgacctgtagttgtgatgtttagttggcacacgcctacggagtcttcggtagttaggtaaataaccgttataggctttatctaactatgtcgac  9180600                     <---------AHL20(1)        <---------DEAR3(2)        <------MYB83 --------->AHL20(1)     <---------ARR14(2)     --------->ARR14(2)              <---------TOE2(3)     <---------MYB52(1)              <---------TOE1(3) --ETT(2)            <---------AHL20(2)          <------MYB46(1) ---ID1 <------MYB46(1)      <---------MYB52(1)  <------MYB83<---------TOE2(3) >DDF1 --------->MYB59  --------->GLK1(2)       --------->MYB59                              <------- ->ETT(2)            --------->AHL20(2)  <-------TEIL       <-----------GT1     <---------TOE2(3)   aaaaccggttcggttcaaaacaataaattctgttttgttaaggttcaagttcggtctagttttgacgatacaaatacaaaacaaggttgtgttcgcagca  9180700                                                                                                    <                                           --------->ANAC58                                         -                                           --------->ANAC58                                    <-----                                        <-------TEIL                                          -------                                       --------->CCA1(2)                                      -------                                      --------->ARR14(2)                                     <-------            --------->ARR11(3)        <---------ARR14(2)                                     --------      <---------LBD16       --------->YAB1 --------->ANAC46                                  <------- --TOE1(2)  <---------ARR11(3)   --------->MYB52(1)                                          --------   ttcactacttcggagatttttcagacagaatcaaaaaacagatacaaggaaacttaaaaatatcaaaacttacatttgtttgattcaagtctcaagattc  9180800                <---------LBD16              <---------WRKY18(1)      ----------->RAV1(2)    --------->AtMYB61    <---------ALFIN1 --------->AtMYB61   --------->GLK1(1) <---------ALFIN1    <---------GLK1(1)             --------->At4g35610 ---------MYB55(2)  --------->ARR14(2)             <---------ZAT2 -------->MYB46(3)--------->LBD16             <---------At4g35610 --TEIL ------>ZmHOX2a(1)                --------->ARR14(2)                                <------ZmHOX2a(2) -->ARR14(1) ----------->HVH21           <---------ARR14(2)  <---------ARR11(3)           --------->ARR11(3) -->CCA1(2)  --------->WRKY12         <---------DEAR3(1)  <---------HSFB2a(2)             --------->AGP1 --ARR14(2)  --------->WRKY38(1)    --------->PCF5 --------->ZAT2                    --------->MYB52(1) ->ARR11(1)<---------ANAC58         <---------PCF2 <---------At4g35610              --------->YAB1 --GLK1(2) <---------ANAC58        ----------->TCP11(1)   --------->HSFB2a(2)      <---------ATHB12 ->ARR14(2)<---------TGA1a     <-----------RAV1(1)----------->ARR10              --------->WOX13(1)   gaaccacctcctgacttgaccggaactctgtttttgtgggccggttttggctgagctctgcgagaacttagacctgtatttctcaatcaacagatcaagt  9180900  Previous    Next  AGI:  At2g21430.1    Description:  cysteine proteinase A494, putative / thiol protease, putative. Identical to Probable cysteine proteinase A494 precursor [Arabidopsis Thaliana] (GB:P43295;GB:Q9SJT5); similar to RD19 (RESPONSIVE TO DEHYDRATION 19), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT4G39090.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60581.1); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Proteinase inh Range:  from: 9178965    to: 9180419    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g21440.1    Description:  RNA recognition motif (RRM)-containing protein. similar to SCL28 (SC35-like splicing factor 28), RNA binding [Arabidopsis thaliana] (TAIR:AT5G18810.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47212.1); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) Range:  from: 9180640    to: 9186246    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
	printer-friendly version