Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                       <------MYB83                                                                     <------MYB46(1)                                                                    --------->ALFIN1                        <---------YAB1                             <<<<<<<<<MYB98                        --------->ICU4                   --------->LBD16                     <---------YAB1                    <---------LBD16             <---------ARR14(2)            <---------ANAC46                  <---------ANAC58     <--------P      --------->ARR14(2)            <---------ANAC58                  <---------ANAC58     --------->ALFIN1<---------ARR11(3)            <---------ANAC58         <------ZmHOX2a(1)-------->P  <-------GAMYB    --------->ARR11(3) ----------->HVH21 ----------->GT1<-----------RAV1(2)--------->MYB52(1)      <-----------GT1        <   accatgacacatttgcttgcattgttattattctcttcaggagtgaatgcgaggctaaccgggttttgggttggggttttaaccagatattgttttctaa  9158700                                                                         <---------ARR14(2)                                                                         --------->ARR11(3)                                                     --------->ZAT2      --------->ARR14(2)                                                     --------->At4g35610 <---------ARR11(3)             ------->GAMYB                           <---------At4g35610 --------->GLK1(2)             --------->TOE2(3)      <------ZmHOX2a(1)<---------ZAT2-------->ZAP1    <---------ICU4          --------->YAB1   <-------TEIL   <---------ARR14(2)   <---------YAB1          <---------YAB1 ----------->GT1   --------->ARR14(2)---------->DOF2 --------->YAB1         <---------YAB1   <---------------AtSPL8  <---------WRKY18(1) -------TEIL--------->MYB46(3)   <---------LBD16    --------->ANAC46    <---------CCA1(2)  <---------ZAT14   aattcatcattctaaccacaactattctgatcataccaggaagggggttcataccagcagcgaattttgaccgagtatctcaaaggaatcgagtccaggg  9158800                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                             --------                                                                                             <-------                                                                                          --------->AHL20(2)                                                                                         --------->AHL20(2)                                            ------->TEIL                                 <---------AHL20(2)                     --------->LBD16     --------->ANAC55(2)                            <---------ATHB12               <-----------GT1           <---------ANAC55(2)                            --------->AHL20(2)         <---------YAB1         <---------ANAC46 <<<<<<<<<GATA-1                   ------->GAMYB      --------->ICU4<---------LBD16   <---------ATHB12       <---------ANAC46      --------->TOE2(3)      <---------ATHB51          ----------->GT1 <-----------GT1          --------->At4g35610 --------   ctaatgaaattatgaaattactccagggttaatgtcgtaaatcatgtatttatctatacatttttgtgtaatatcagttcaataaccccaattaatatat  9158900                         <---------WOX13(1)                       --------->ATHB12                      <---------YAB1                  <---------AHL20(2)                                                           ------                  --------->AHL20(2)                                                           <-----               <---------ICU4                                                                 -------               <---------AHL20(2)                                                         --------->AHL20(2)         --------->ANAC55(2)                                                              <---------AHL20(2) --AHL20(1)    <--------ATHB1                                                             <---------YAB1 ->AHL20(2)    --------->AHL20(2)                                   <---------ZAT14      --------->AHL20(2) --AHL20(2)    --------->YAB1                      --------->AHL20(2)                    <---------AHL20(2) ->AHL20(1)    <---------AHL20(1)                  <---------AHL20(2)                 <---------GLK1(2) --ARR11(3)   --------->ICU4                <---------At4g35610     --------->ZAT14   <---------ARR11(3) ->ARR11(3)   <---------ATHB51         <---------ZAT6         ------->TEIL       <-----------GT1   tgttttctctcatgtaataattttttgattgagcatttgaagtgttatctgatttaaaaatatgaagctctgtagtcaaaattttacagattttaattat  9159000                                                                                --------->ANAC46                                                                    <---------AHL20(2)                                                                    --------->AHL20(1)                                       ---------->DOF2              --------->AHL20(2)                            --------------->AGL15                  <---------AHL20(2)     --------->AHL20(2) <---------ANAC58      --------->ICU4    --------->WOX13(1)    *TSS --->ARR11(3)           <---------ANAC58 ----------->GT1      ------------>CBF  --------->ANAC58 ----ARR11(3) ---------->DOF2    --------->AHL20(2)         --------->AtLEC2    --------->ANAC58    - -->YAB1   ----------->GT1  <---------------AGL15  ----------->GT1 --------->AHL20(2)<------------CBF   cttggaataaaaaatgtaaagttgatgcttccatataaaataaaagtaaaaatgagtaattcatgccaattaaattagcgagacgcaaattggagacaga  9159100                              --------->ANAC58                              --------->ANAC46                              --------->ANAC58                                        ---------------                      ------>ZmHOX2a(2)                                         <---------ANAC58                     <------ZmHOX2a(2)                                        <------ZmHOX2a(2)                    --------->AGP1                                           --------->ARR14(2)                    <---------AGP1                                           --------->ARR11(3)                    <---------ARR14(2)                                 --------->HSFC1(1)                    --------->ARR14(2)                                 <---------HSFC1(1)                    <---------ARR11(3)                <<<<<<<<<TBF1    --------->HSFB2a(2)                    <-----------ARR10  ------->TEIL <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)                    --------->ARR11(3) <-----------ARR10    <<<<<<<<<TBF1    <---------ARR14(2)      --------->At4g35610  <----------ID1     --------->DEAR3(1)  <<<<<<<<<TBF1 <---------ANAC58      <---------At4g35610  --------->ANAC46 <---------At5g28300<<<<<<<<<TBF1 <---------ARR11(3)    -- -------->MYB52(1) <---------CCA1(2)  <---------GLK1(2)  <<<<<<<<<TBF1 <---------HSFB2a(2)         --   gataactgagcggagggattcagatctatacgacgaaactgaatctcaccgtcttcttcttcttcttcttcttctagacgatccttgtgtttctcttgct  9159200                                                                                 ====================                                                                                 ------>ZmHOX2a(2)                                           <---------ZAT2                       --------->At4g35610       --------->ANAC58                    --------->At4g35610                  <---------At4g35610       --------->ANAC46                    <---------At4g35610              ------>ZmHOX2a(2)       --------->ANAC58                    --------->ZAT2             <---------At4g35610 ------->TEIL     <---------ALFIN1                   ---------->DOF2             <---------ZAT14  <---------ANAC46 -------->TaNAC69(2)               <---------At5g28300              --------->ZAT18  --------->At4g35610 ------->ANAC58                 <-----------HVH21      ------>ZmHOX2a(2)   <---------At4g35610 ------->ANAC58                ------>ZmHOX2a(2)  <----------DOF2   --------->ZAT14  ----------->GT1   ctcgcatccacgcttctctggtaatgctactgatcgtcaccgtgaagctgagcttgatcgcttccccttgtgaactgatctgatctgaggtgaatctcta  9159300                                                                                      <---------ANAC58                                     <---------ARR11(3)                               <---------ANAC46                                     --------->ARR14(2)                               --------->ANAC55(2)                                     <---------ARR14(2)                               <---------ANAC55(2)                                     --------->ARR11(3)                               <---------ANAC58                                     <---------AGP1                           ------->MYC2                                     <-----------ARR10        ------>ZmHOX2a(2)       <---------ANAC55(1)                      ------->TEIL  <---------CCA1(2)        <------ZmHOX2a(2)------->PIF5                      --------->ARR14(2)                    <---------AGP1   ========================                      --------->GLK1(2)                     --------->ARR14(2)<-------MYC3                      <---------ARR14(2)     <---------At4g35610             <---------O2                     <---------GLK1(2)<------ZmHOX2a(2)     --------->AGP1   --------->TGA1a                <---------SPL7   <---------HSFB2a(2)        <---------ARR14(2)<-------PIF5              <---------------AtSPL3<---------ARR14(1)      <---------ARR11(3)<-------MYC2             --------------------->WRI1------>ZmHOX2a(2)    --------->ARR11(3)------->MYC3            --------->ATHB12     <---------LBD16          ----------->ARR10  <---------ANAC46       ------>ZmHOX2a(1)         --------->HSFB2a(2)    <---------MYB52(1)   --------->O2 =============HOX2a_HOX2a    <---------GLK1(1)         --------->TOE2(3)     <---------TGA1a  <------   tttcttctccttcttcattgtacgaatctcgatttctcggatcttgctgcttcttatcgttagatctgttttcaatttcacgtggattacgttttttttc  9159400       --------->LBD16      <---------ANAC46                      <---------ARR11(3)                                   ----      <---------ANAC58            <----------DOF2            --------->ARR11(3)           <---------ANAC55(2)      <---------ANAC58           ------>ZmHOX2a(2)           <---------AGP1               <---------ANAC58     <---------LBD16           --------->ARR11(3)        <-------GAMYB                    --------->ANAC55(2) <----------DOF2           <---------At4g35610 <-----------GT1                            <---------ANAC46 ===========bZIP_DOF  --------------------->WRI1<---------YAB1 ------>ZmHOX2a(2)          <---------ANAC58 -----GT1    <-----------GT1   <---------ARR11(3)       <-----------RAV1(1)            <---------MYB52(1)   ttccttttgcgggtttttcgatttctttgaactgatctttctccatgattttcattctctgttgatctggtttttgtagagttgtttctgtttcgtaatc  9159500                                                         --------->ANAC46                         ---                   --------->HSFB2a(2)   <---------TOE1(3)                                      <----      --------->At4g35610         ------->GAMYB        <---------ALFIN1                 <<<<<<<<<<<<<      <---------At4g35610      <---------ARR14(2)   <-----------GT1      --------->ARR14(2)     <----  --------->ARR14(2)           --------->ARR14(2)   <---------ARR14(2)   <---------ARR14(2)     <----  <---------ARR14(2)           --------->MYB52(1)   --------->ARR14(2)   <---------GLK1(2)   -------- ------->GT1       <---------HSFB2a(2)   <---------TOE2(3)      --------->MYB46(3)     <---------REM1(2)   tgtgaatatgctgaccaagttcgagaccaagagtaaccgagttaagggtctgagtttccaccctaaacgaccatggattctcgcgagtttacacagtggt  9159600  Previous    Next  AGI:  At2g21385.1    Description:  similar to Os09g0531100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063753.1); similar to unknown [Picea sitchensis] (GB:ABK27019.1) Range:  from: 9156723    to: 9158978    Orientation: Forward Links:  TAIR  MIPS    AGI:  At2g21390.1    Description:  coatomer protein complex, subunit alpha, putative. Identical to Coatomer subunit alpha-2 [Arabidopsis Thaliana] (GB:Q9SJT9); similar to coatomer protein complex, subunit alpha, putative [Arabidopsis thaliana] (TAIR:AT1G62020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61059.1); similar to coatomer alpha subunit-like protein [Lotus japonicus] (GB:CAE45585.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48436.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain Coatomer, alpha subunit, C-terminal; (InterPro:IPR010714); contains InterPro domain WD40/YVTN repeat-like (Inte Range:  from: 9159086    to: 9163958    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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