Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                             --------->ANAC58                  ------->GAMYB            --------->ANAC58      <----------ID1          ---------->DOF2  --------->AtLEC2   <-------TEIL --------->At4g35610                                         --------->KAN4(2)  --------->CCA1(2)        --------->ANAC58                               <------ZmHOX2a(2) <---------ARR14(2)       <-------MYC3                                    <---------YAB1 --------->ARR14(2)       ------->MYC3                                   --------->ARR11(3)<<<<<<<<<SARD1 ------ZmHOX2a(1)<---------MYB52(2)                                      <---------ARR11(3)<<<<<<<<<CBP60g ----->YAB1 --------->ANAC58  ---------->DOF2                 ---------->DOF2   <-----------GT1   caggatacagaacaaagcaactcactcacatgcaaagaaacaaaaacaattgtctgtgatacagcaaagacttaagatcattctacgattccaaatttcc  9114100                                                                                             ------>ZmHOX2a(1)                                                                                             ========                                                                                         --------->ARR14(2)                                                                                         --------->ARR11(3)                                                                                    <-----------GT1                                                                               <---------AHL20(2)                                                                            --------->AHL20(2)                                                                            <---------AHL20(2)                           <---------ICU4                                   <---------AHL20(1)                 --------->TOE2(3)                                          --------->AHL20(1) <<<<<<               <---------ARR11(3)                                        ------>MYB83    <---------ARR14(2)               <---------ARR11(1)  --------->ANAC46                      ------>MYB46(1)<---------GLK1(1)               --------->ARR14(2)  --------->ANAC58                    --------->TOE2(3)--------->GLK1(1)              <---------CCA1(2)    --------->ANAC58                    <---------MYB59  <---------CCA1(2)  <---------ANAC55(2)     --------->ICU4  --------->GLK1(2) --------->AHL20(2) --------->AHL20(2)   aaatacttaaaaacccaaatcttaagacataatttccaagtaagattccaactttcaacaaattaaaacaaaacctaatattttattcacatatcctgac  9114200                <------ZmHOX2a(2)               <---------ARR11(3)                                                ------>ZmHOX2a(2)               --------->ARR11(3)                                                --------------------           ---------->DOF2                                                      <------ZmHOX2a(2)        ----------->RAV1(1)                                        ----------->HVH21     --------->ANAC58                                              ----------->TGA1     --------->ANAC58                                            <---------At4g35610            -----     --------->ANAC46       ----------->GT1              <---------ZAT18       --------->ARR11(3)   --------->LBD16         --------->DAG2                <---------ZAT14       <---------ARR14(2)  --------->ANAC46  ---------->DOF2                      --------->ZAT14       --------->ARR14(2) ======================HOX2a_HOX2a                      <---------ALFIN1  --------->MYB52(1)   <----- <GRF7 <----------ID1    ---------->DOF2<---------ZAT6 --------->ZAT2 <---------YAB1       <------NtERF2   aaacccgaagcaacaaagatcagaaagaaaaggttttaagcagtgttaagttataccagcacagtcgagatgacgataaccgatcttgatggcatcgatg  9114300                                                                           --------->ZAT14                                                                        <---------ANAC46                                                                      --------->ZAT14     <---------HSFB2a(2)                                      >>>>>>>>>>>>>>>>>LFY     --------->HSFB2a(2)                                     --------->ANAC46  --------->ARR11(3)                                         --------->ANAC58  <---------ARR11(3)                              ------>ZmHOX2a(2)   <---------ZAT14 ->WRI1          <----------DOF2               --------->ATHB12     --------->ZAT14               <-- ---->YAB1 --------->ARR11(3)         ===================HOX2a_HOX2a<---------ZAT14               <-- ----YAB1  <---------ARR11(3)         ------>ZmHOX2a(1)      --------->ANAC58             <<<<<<<<<TBF1   ataaggtctcgaagctcttctttctccattctccaaactcctaagccgatgatcggcattttgaagccactgttcagtgtaatctccatttcttcttctt  9114400                                                                             --------->ANAC55(1)                                                                             --------->ANAC58                            --------->ARR11(3)                               <---------TGA1a                            <---------ARR11(3)                               --------->O2                            --------->ARR14(2)                               ====================bZIP_DOF                            <---------ARR14(2)                               --------->bZIP60(2)                           <---------GLK1(1)                      <------MYB46(1)                           --------->RVE1(1)                      <------MYB83 ------------>CBF                           --------->GLK1(1)                  --------->MYB52(2)                          --------->ARR11(3)                 *TSS--------->MYB59                     <---------ANAC46                       <--------P       --------->TGA1a                    <---------MYB46(3)                      ===========================MYC_MYB                  <---------WOX13(1)                      ----------->GT1    <---------O2             <---------ANAC58                      ----------------->AGL1    --------->ANAC46             <---------ANAC55(2)                  <-----------------AG --------->ANAC58             <---------ANAC58                     ----------------->AG --------->ANAC58          ----             --------->ANAC55(2)                  ----------------->AGL1     --------->ANAC58    <---       ------>ZmHOX2a(1)  <---------ARR11(3)      <-----------------AGL1   <---------ALFIN1     <----      --------->TOE2(3)<--------P                 <-----------------AGL2------->GAMYB ---------->DOF2 -------ANAC58  --------->ATHB12<---------At4g35610<---------------AGL15<---------ZAT18--------->DAG2 -------ANAC58--------->LBD16   --------->At4g35610--------------->AGL15===============MYC_MYB  -----   gcttctctcctcaatccgtgattgggtagatatctgctcagaattgagagtttcccagtatggtaagttggtaacgcacacgtcaatataaagtggtcat  9114500                                                                                 ------->TEIL                                                                              <---------ANAC55(2)<---                                                                              --------->ANAC58   ----                                                                              --------->ANAC46 <-----   ------>ZmHOX2a(1)                                                          --------->ANAC55(2)---- ----->ATHB12                                                            <---------ICU4        ------ ------ICU4               <---------------AtSPL3                        ------------>CBF     -------- -----YAB1       ------------>CBF                                      ------->TEIL <---------SPL7 ---->ICU4     ------>NtERF2      <---------MYB52(1)         ---------->DOF2  --------->ANAC58 ------   gattcctcactattcgaggcccaatgggctagtaccgttttttgtgaagcccaaactgttttacaaagacatgaatcaatacgcaccgtatgggtatata  9114600                                                                                                  <--                                                                                                  ---                                                                                                  ---                                                                                                  <--     --------->ANAC46      *TSS                                                      --------->ATHB12     --------->ANAC58      ---------->DOF2              <---------HSFB2a(2)         <---------YAB1<--     --------->ANAC58    ------>ZmHOX2a(1)              --------->HSFB2a(2)         <---------AHL20(2) ------AHL20(2)      <---------ARR14(2)         <-------GAMYB                       --------->AHL20(1) ------->TBP--------->DOF5.7(2)                 <---------ANAC58                    --------->AHL20(2) ----AHL20(2)        --------->ARR14(2)    <---------ANAC58                        --------->AHL20(2) ----->AHL20(2) <-----------GT1            <---------ANAC58    --------->WOX13(1)  <---------AHL20(2) --->AHL20(2)  <---------YAB1          <----------DOF2 <---------ANAC46      ----------->GT1   <xxxxx --->TBP   --------->TOE2(3)          <---------ICU4<---------ANAC46      ---------->DOF2   --------- ----->TBP --------->TOE1(3)        ------->TEIL<---------ANAC58         ------>ZmHOX2a(1)<----------   tatatacaagcaacgttatcacaggtcctcaaagtttgcatctttacttgggttgtgtctggaatcaattacttcctaaaggtaattttattggtcgggc  9114700         <---------MYB46(3)         --------->ABI4(2)         --------->MYB55(2) ----NtERF2 ------>At4g35610 ------>ZAT2 -------At4g35610 -------ZAT2          <---------YAB1                            ---------->DOF2                    <- xxxxxxxxxxxsmallRNA(i)               --------->GLK1(2)--------->AHL20(2)             <---------ANAC46 >ETT(1)<---------AtMYB61         --------->YAB1       <---------AHL20(2)     <---------AtMYB61 <---- -HVH21<---------MYB52(1)<---------YAB1             <----------DOF2         <----------DOF2     -----   agctcaatcggtggtttctgagttcttattcttctctgataatctcaagacgagcttttaattttgtaaagtttttagctttggtattgtttgtatcgat  9114800                                     <---------GLK1(1)                                    <---------ARR14(2)                                <---------LBD16                                --------->LBD16                               <---------ANAC46                               <---------ANAC58                     --------->HSFB2a(1)                                      <---------ANAC58                     <---------HSFC1(2)                                   ------>ZmHOX2a(2)                     <---------HSFB2a(1)  --------->LBD16               --------->ARR11(3)                     --------->HSFC1(2)   ----------->GT1               <---------ARR11(3)                    --------->GLK1(2)--------->GLK1(1)                  <---------ARR14(2)                    --------->ARR14(2)  <---------LBD16                 --------->ARR14(2)                    <---------ARR14(2)<---------ARR14(2)             <---------TOE1(2)--------->MYB52(2)         <----------DOF2       <---------HSFB2a(2)      ========================HOX2a_HOX2a --------ALFIN1    <---------GLK1(2)---------->TaMYB80  =========================HOX2a_HOX2a      --- --ZmHOX2a(2)   ------>ZmHOX2a(2)   --------->ARR14(2)  <------ZmHOX2a(1)<------ZmHOX2a(2)     ------ ---->PCF2  <---------YAB1    <---------LBD16         <---------TOE2(3) <-----------ARR10    --------   cccactctcaacttttgatcggaatcttctgttctggggatttccggtgaattgtttaggaataggtttccaaggatcttacttgggtttgtttcaaaag  9114900                                                                                            <--------                                                            <-------TEIL               --------->YAB1                                                           --------->CCA1(2)        --------->YAB1                                                           --------->GLK1(2)       <---------YAB1                                                    --------->At4g35610     <---------TOE2(2)                                     <------MYB46(1)<---------ZAT2          <---------TOE2(3)                                     <------MYB83   --------->ZAT2     --------->ARR11(3)   <-------- ------>ALFIN1      <---------HSFC1(2)              <---------At4g35610<---------ARR11(3)   <-------- --->DAG2           --------->HSFC1(2)           <---------At4g35610 <---------TOE2(3)<---------YAB1 -->DOF2     <---------REM1(1)      <---------TOE1(2)   ----------->ARR10   <---------TOE1(2)   gtgggattttgcaagttgtagatggttcttcgattttgtaggtttctattcttctgctgagattcgaaattgaggtcttaggtttttgataatagcttgt  9115000  Previous    Next  AGI:  At2g21260.1    Description:  mannose 6-phosphate reductase (NADPH-dependent), putative. similar to mannose 6-phosphate reductase (NADPH-dependent), putative [Arabidopsis thaliana] (TAIR:AT2G21250.1); similar to NADPH-dependent mannose 6-phosphate reductase [Orobanche ramosa] (GB:AAG15839.2); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) Range:  from: 9112664    to: 9114461    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g21270.1    Description:  ubiquitin fusion degradation UFD1 family protein. similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT4G38930.2); similar to unknown [Populus trichocarpa] (GB:ABK95938.1); contains InterPro domain Ubiquitin fusion degradation protein UFD1; (InterPro:IPR004854) Range:  from: 9114627    to: 9117342    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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