Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                    ---                                                 --------->ATHB12                                 ---                                                 <---------ICU4                      <---------WOX13(1)                                                --------->ICU4                    <---------YAB1  ---                                                <---------YAB1                <---------GLK1(2)<-----                                             <---------TOE2(3)                --------->ARR14(2)-----       ---------->DOF2                   --------->CCA1(2)              --------->GLK1(2)     ------>MYB46(1) ------->ANAC58                         <---------ARR14(2)              <---------ARR14(2)    ------>MYB83 ------->ANAC58                       ----------->ARR10                 --------->ARR14(2)   -------- ------>DOF2  <---------AtLEC2       <------ZmHOX2a(1)                 <---------GLK1(2) <-----------GT1   aaagcaaaccaaagttgcattgaatcaattgaagactgaggagatttgagattattgccaaaaacaatttagagaatctggattctaattgataccaatc  9079900                                                                                                   --                                                                                                  <--                                                                                               ------                                                                                              <------      ---------->DOF2                                                                         -------  --------->ANAC58                                                                        <----------DOF2  --------->ANAC58                   ------>ZmHOX2a(1)                                   <---------DAG2 ------>AtLEC2               --------->ANAC46                                           <---------HSFB2a(1) ------>ANAC58               --------->ANAC58    <---------ARR14(2)            <---------TOE2(3) <--- ------>ANAC58           <---------ALFIN1        --------->GLK1(2)             <---------TOE1(3) ---- ----ATHB12      <---------DAG2     --------->TOE2(3)                         <---------DOF5.7(2)<--- ---->YAB1       <----------DOF2   --------->YAB1--------->ARR14(2)           ---------->DOF2<------- ->WOX13(1)   <-----------GT1--------->ANAC58--------->YAB1                <-------GAMYB--------->HSFB2a(1)   atgcaagtaaaaggaataacttttctcacacactcaatcctaaacaatgagaatctagcatttcaatagagtttgagggttaaagttggaacctttccgg  9080000                                                                                             <------MYB46(1)            --------->REM1(1)                                                               <-------- ---->ZmHOX2a(2)                                                                            --------- ----ZmHOX2a(2)                                                                 --------->ALFIN1 --->LBD16  --------->MYB46(3)                                                 --------->At5g28300 ---HSFB2a(2)                                                                 <---------ANAC46  ----- -->HSFB2a(2)         <---------LBD16                                        <---------DEAR3(1) <---- --------ARR10       <-----------RAV1(1)                       <--------P    --------->ALFIN1<------MYB83 ----->ARR14(2)     <---------LBD16                        <---------ANAC46 <---------LBD16 <-------- ------ARR14(2)<---------ALFIN1        >>>>>>>>>TBF1--------->CCA1(2)   ----------->HVH21<------ZmHOX2a(1) --LBD16 <xxxxxxxxxxxxxxxxxxxxsmallRNA(se3)    <------ZmHOX2a(1)    <------ZmHOX2a(1)    --------->ATHB12   atccagccatggcaacaacacctctgggggagcgatgagaagaagaagaggaagaaacgagacgggtagaggaattgacgcggtggaagaaggattggtg  9080100             <------NtERF2             --------->At4g35610             --------->ATERF1(1)             <---------At4g35610            <---------ATERF1(1)           <---------DEAR3(1)          <------NtERF2          <---------At4g35610          --------->ATERF1(1)         <---------ERF1         ------>NtERF2         <---------RAP2.3(1)        <---------RAP2.3(2)                  --------->LBD16        --------->ATERF1(2)             ----------->HVH21        <---------RAP2.6(2)            --------->ATERF1(1)        <---------ATERF1(2)            <------NtERF2       <------NtERF2 <---------ANAC58 <---------ATERF1(1)       --------->ATERF1(1)            --------->LBD16      <---------RAP2.3(1)            <---------DEAR3(1)      <---------ORA47(2)            <---------At4g35610      <---------DEAR4(2)            --------->ATERF1(1)      <---------ATERF1(1)           <---------LBD16                                     <------NtERF2     <---------DEAR3(1)             <------NtERF2                                      <---------SPL7     <---------RAP2.3(2)            ------>NtERF2                                     <---------ANAC58     <---------RAP2.3(3)           <---------RAP2.3(1)                                <---------ANAC58    --------->ATERF1(1)           <---------DEAR3(1)                                  --------->ETT(2)   <---------ATERF1(1)            <---------RAP2.6(2)                                 <---------ANAC46  <---------ARR14(2) <---------ANAC58<---------ANAC46                              --------->bZIP60(2)  ----------->HVH21 --------->ZAT2<---------RRTF1(3)                           ------>NtERF2 <------ZmHOX2a(1)  <---------ZAT2<---------RRTF1(2)                        <---------At4g35610     - -AtMYB61<---------ATERF1(1)      <---------RAP2.3(3)                       --------->ZAT2        <-- >ALFIN1<---------DEAR3(1)        <---------RAP2.3(2)                       <---------ZAT2   -------- ---->MYB55(2)<---------ANAC46<---------GLK1(1)          --------->ALFIN1   --------->At4g35610   <-- -----MYB46(3)--------->DEAR3(1) <---------LBD16        <------ZmHOX2a(1)  --------->MYB111(2)    <-- -MYB46(3)--------->At4g35610 --------->CCA1(2)  ---------->DOF2          <--------P<-----------HVH21   ggaggagacggcggcagcgtcgagcttgggagaaatgcggcggagaccggagaaagaaggaggggcagtgagagaggtagctgccatgtcgtcgggtttg  9080200                                                                                                    <                                                                                                   <-                                                                                                   --                                                                                                  <--                                                                                                <----                                                                                                <----                                                                                                <----                                                                                               <-----                                                                                               <-----                                                                                               <-----      --------->ATHB12                                                                         ------ <---------ZAT14                                                   --------->At4g35610         ------ --------->REM1(2)                                                 <---------At4g35610         ------ --------->ZAT14                                              <---------TOE1(3)                ------ -------->ALFIN1                      --------->O2            <---------TOE2(3)                ------ -------ANAC58            <------ZmHOX2a(1)              <---------At4g35610                  <------ ->ALFIN1           ---------->DOF2   <---------O2       --------->ZAT2                      <-------GAMYB -------ANAC58  --------->DAG2      --------->CCA1(2)    <---------ZAT2  <------ZmHOX2a(1)  --------- -------ANAC46---------->DOF2      <----------ID1        --------->At4g35610 --------->CCA1(2)<------   gcgtgtagtgagtggaaaaaggcaaagaggagagatagagacgagactgtgactctctcagcttaaggtagcagaggagatagaggcgatgagagggttg  9080300                                                                                            ---------     --------->ZAT18                                                                        <--------     --------->ZAT14                                                                        --------- -------GAMYB                                                                               --------- --------MYB46(3)                                                                           <-------- ------->MYB55(2)                                                                           --------- -------AtMYB61                                                                             <-------- -----MYB46(3)                                                                              --------- --MYB83                                                                                    --------- --MYB46(1)                                                                                 <-------- ----DEAR3(1)                                                                               --------- ----MYB46(3)                                                                             <---------- ----AtMYB61                                                                            <-----------HVH21 --->MYB111(2)                                                                 ====================== --->MYB55(2)                                                                  --------->ANAC58 --->MYB111(1)                                  ----------->HVH21              --------->ANAC58 --->ALFIN1                                    --------->ANAC58                --------->TGA1a --->MYB46(2)                         <----------DOF2             --------->ANAC58 <------NtERF2 --P <---------ZAT18                ---------->ID1      ----------->GT1        <---------TGA1a --->AtMYB84               --------->At5g28300 --------->ANAC58   --------->ANAC58------>NtERF2 ---MYB55(1)  *TSS        ----------->GT1 --------->HSFB2a(2)--------->YAB1    --------->ANAC46   gtggttgtgctctctctcttactctcgagggtaattttgtctttctcgcactcacagatggtatcatcaagcctcgttctcacgcgcctatgtcacgtct  9080400      ------->PIF5      <-------PIF5      ------->MYC2      <-------MYC2                  --------------->AGL15      <-------MYC3                  <---------------AGL15      ------->MYC3                 ----------------->AGL1 >ANAC58                          --------->ZAT18 -O2 --------->ANAC58          --------->ZAT2 >O2 --------->ANAC58          <---------At4g35610 >TGA1a                        --------->At4g35610 -TGA1a                      <-----------RAV1(2)                                                 <--- >bZIP60(2)                 <------ZmHOX2a(2)                  --------->TOE2(3)                 <--- -bZIP60(1)            ------>ZmHOX2a(1)                 <--------HAHB4                          ---- >bZIP60(1)           --------->TOE2(2)                  --------->YAB1                   <---------- >ANAC55(2)           --------->TOE2(3)                  --------->ATHB12            ----------->GT1 -ANAC55(2)           --------->TOE1(2)                 <---------YAB1           --------->HSFB2a(2) >ANAC58   <---------ZAT14 <---------ARR11(3)           --------->ICU4           <---------HSFB2a(2) -GT1<---------ALFIN1--------->YAB1<-----------------AGL1<---------ICU4      <---------ANAC46   ----- =bZIP_bZIP--------->ZAT14 --------->ARR11(3)         --------->YAB1--------->ZAT6   <---------ANAC46   cgttgccacgcgctgtagtccaatcctaagatcaggtgcccaaaatggtcgatgaataatcatttcattaacactgtttccgtcgagacgtttaactaat  9080500                                        ---------->DOF2                                    ----------->GT1                                    <------MYB83                                    <------MYB46(1)                               <---------AHL20(2)                               --------->AHL20(2)                               <---------ICU4                               --------->ATHB51                               <--------ATHB1                              <---------YAB1                                                      <-- ------------AtSPL8         --------->YAB1                         <------MYB83        <---------WRKY45 ------ICU4    <---------YAB1 --------->ICU4                      <---------TOE1(2)    <---------WRKY12 ----------->AtSPL8        <---------AHL20(2)            <---------MYB59               <---------WRKY38(1) -GT1  <---------ICU4     --------->AHL20(2)       --------->MYB52(1)            <-----------RAV1(1) ---->ICU4     <---------TOE2(3)   --------->MYB59------>ZmHOX2a(1)<------MYB46(1)    --------->WRKY18(1)   tagtactactaatttctaagattgaacatataataatttggtaaaagtattcctaagggcctaatttgtaggtataaatttttctgtggtcaacaattag  9080600            <------NtERF2           --------->LBD16          <---------ANAC46          --------->ETT(1)         <-----------------AGL1         <---------LBD16        --------->MYB52(1)                   --------->At4g35610                                    -     <---------ANAC58                        <---------At4g35610                                   --     <---------ANAC58                        --------->ZAT2                                   <------   <---------YAB1                            <---------ZAT2                <-------MYC3      --------  <---------ZAT14                       --------->ARR14(2)                 ------->MYC3      --------  --------->ZAT14                       <---------ARR14(2)  <----------DOF2------->MYC2      -------- ---------GT1                   --------->ZAT6 <---------MYB46(3)          <-------MYC2<-----------GT1   tcactatacttgccggagaaggcatagggatggaacactaagtatccagctgttcagcctgtctttagtatggagcatgtgtctcttattaacccaagca  9080700                                                            --------------->AGL15                                                            <---------------AGL15                                                            =========================================                                                           ----------------->AG                     -                                                           ----------------->AGL1            <-------                                                           <-----------------AGL1           <--------        <---------ANAC58                                  <-----------------AGL1          --------->At4g35610        <---------ANAC58        ------>MYB83              ===========================================      <---------YAB1       <-----------GT1                <-----------------AG            <---------ATERF1(1) --------->DOF2        <----------DOF2               <---------DAG2                       ------>NtERF2 ------->YAB1         --------->TOE2(3)          --------->ZAT18                         --------->DEAR3(1) ---ATHB12         ------>ZmHOX2a(1)             <---------ZAT18                        --------->ATERF1(1) ->ANAC58      <---------ARR14(2)                <---------ZAT14                       <---------ATERF1(1) ->ANAC58      --------->ARR14(2)     --------->TOE2(3)<----------DOF2     ----------->GT1<---------At4g35610 ->ANAC46      --------->GLK1(2)------>MYB46(1)  --------->ZAT14      <-------TEIL  <-----------HVH21   ataaaagcatgcttgagaatccttcctttaaaccaaatagccttataccagtccactctttcccctatagggttcaagtgtaacaacgtcgcagcccact  9080800  Previous    Next  AGI:  At2g21170.1    Description:  TIM (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase. Identical to Triosephosphate isomerase, chloroplast precursor (TIM) [Arabidopsis Thaliana] (GB:Q9SKP6); similar to ATCTIMC (CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE), triose-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT3G55440.1); similar to Triosephosphate isomerase, chloroplast precursor (TIM) (Triose-phosphate isomerase) (GB:Q9M4S8); contains InterPro domain Triosephosphate isomerase; (InterPro:IPR000652); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 9077835    to: 9080314    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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