Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                         ------>ZmHOX2a(2)                                              ------>ZmHOX2a(2)                                             --------->GLK1(1)                                            <---------AGP1                                            <---------ARR11(3)                                            --------->AGP1                          <-----------RAV1(1)<------ZmHOX2a(2)                         --------->ARR11(3) <-----------ARR10                     <---------At4g35610    --------->ARR11(3)                  <------ZmHOX2a(1)         --------->ARR14(2)                  ===================================HOX2a_HOX2a                  ==================================HOX2a_HOX2a                                 ----- --------->DOF2 --------->LBD16             <---------ARR14(2)                                  <---- ------ID1     <-----------RAV1(2)         <---------CCA1(2)     --------->ARR14(2)             ----- -->MYB52(1)   =======================RAV<---------HSFB2a(2)     --------->GLK1(2)    <---------ARR11(3) ->CCA1(2)    --------->TOE1(2)          --------->HSFB2a(2)     <---------ARR14(2)   --------->ARR11(3) ----------WRI1<---------LBD16          --------------------->WRI1      --------->ZAT14--------->CCA1(2)   ggcaaaggagagaaaacccaggaagcagatgttgttgtctctcccagatctcatcgatctcattccgaatccagtagacactaagagagatatgtgagtg  8986300                               --------->At4g35610                               <---------At4g35610                                          ---------       <---------------------WRI1                                                           ---------     <---------MYB46(3)  <-----------ARR10                                        <----------DOF2 ---->ZAT18         --------->ANAC58                              --------->DAG2  <---------DAG2 -----ZAT14         --------->ANAC58        <---------YAB1       --------->DAG2--------->ARR11(3) ---->ZAT14       ---------->DOF2        --------->GLK1(2)      ---------->DOF2<---------ARR11(3)   aacagagtcgttgaaaattcaaaagcaaaacttagcagccaagaatatgattcgacagacgaaggaaaaaggtgagtaagagaactttatgttatcttaa  8986400                                                                               --------->GLK1(2)                                                                               <---------ARR14(2)   --------->DAG2                                           *TSS               <-----------ARR10  --------->DAG2                                        --------->GLK1(2) --------->ANAC58 ---------->DOF2                                        <---------ARR14(2)--------->ANAC58 >TOE2(3)                                    <---------ANAC46             --------->AtLEC2 >YAB1                                <-----------HVH21 --------->ARR14(2)--------->ANAC46   gagaaaagggaatgtttttttgcaagtgagtgagagagagcgtcactgtgtgaatgcgattcttcttagttcttacaagcaaatctaaacttgtgttttc  8986500                                                                           --------->AHL20(2)                                                                           <---------AHL20(1)                                                                           --------->AHL20(1)                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                     <---------TOE2(3)                                                                  >>>>>>>>>>GATA-3                                                                  >>>>>>>>>>GATA-1                                                                  >>>>>>>>>>GATA-4                 --------->MYB52(1)                               >>>>>>>>>>GATA-2              --------->ANAC46                                   --------->YAB1              --------->ANAC58                                  <---------YAB1              --------->ANAC58          <----------DOF2   <---------AHL20(2)        <----------DOF2            --------->At4g35610        <-----------------AGL3 --------->YAB1<---------YAB1      <---------ANAC46          ---------->DOF2           --------->AHL20(2)<---------AHL20(2)   ----------->HVH21        <----------ID1            --------->REM1(1)<------ZmHOX2a(1)        -----   aaaatttgacgggcagacgaaacagagaagacgacaaagaagcttttaatgggcctacatttatttatgataaggaatataatgggctttagtttataaa  8986600                                                               ----------->HVH21                                                              <-----------HVH21                                                              <-----------TGA1                                                             --------->ANAC46                                                            ----------------->AGL1                                               --------->TOE1(3)                     --------->GLK1(2)                       <---------HSFB2a(2)     --------->TOE2(3)           --------->ARR14(2)                       --------->HSFB2a(2)<-----------TGA1  *TSS           --------->GLK1(2) <-------              <---------ARR11(3)          <-----------HVH21<---------At5g28300 ------>ZmHOX2a(1) ------->CBF  --------->ARR11(3)     <-------TEIL      <---------ICU4      <---------ARR14(2)<-------   caataggcccaaatgagaccttcttgtagaagaagagggttcatcgtcaccttaaactcattaccgtcaccggtgagattcctccaaaatcgggactttt  8986700                                                                  <---------ANAC58                                                            <---------HSFB2a(2)                                                          <------NtERF2                                                         ------>NtERF2                                                        --------->DEAR3(1)                                                        <---------ANAC46                         <---                                                        <---------DEAR3(1)                      <----                                                      --------->LBD16                          ------                                                      <---------ATERF1(1)                    --------                                                     <---------DEAR3(1)           --------->At4g35610                                                    --------->SPL7<---------ANAC58<---------At4g35610                            ------>NtERF2          <---------MYB52(1)           <---------DEAR3(1)                           <---------ALFIN1        <---------SPL1(1)           ------>ZmHOX2a(1)<----               <-------TEIL--------->DEAR3(1)     <-----------HVH21      ------>ZmHOX2a(1) <---------LBD16   <------ZmHOX2a(1)     <---------ATERF1(1)      <---------SPL7 --------->HSFC1(2)  --------->At5g28300 ---DOF2    <---------At4g35610                ------>ZmHOX2a(1) <---------HSFC1(2) <----------DOF2-- --DAG2     --------->At4g35610           <---------GLK1(2) --------->HSFB2a(2)<---------LBD16<------   tctcaggacgtttgagatgcattcgcgctccgccttgctctatagattcctccgtccggcgtcgagatgcttctcctcttcctcggctgtaactccggtc  8986800    --------->ANAC55(2)    --------->ANAC58    --------->ANAC58                          <---------ANAC46  --------->SPL7                             <------NtERF2  ---------->DOF2                          <---------DEAR3(1) <---------MYB52(1)                      <---------At4g35610                    --------->ANAC46 ------At5g28300                         ----------->RAV1(2)                    <---------DEAR3(1) -----WRKY38(1)                          <---------ZAT2                        <---------LBD16 ----->HVH21                             --------->At4g35610       <------------MYB.PH3(1) ->LBD16                                 --------->ZAT2          --------->MYB52(1) -----WRKY12                           <---------DEAR3(1)       ----------->HVH21       <---------ANAC55(2) ------->ANAC46                     <---------ZAT2            --------->HSFB2a(2)       --------->ANAC55(2) -----HVH21       <---------GLK1(2) --------->ZAT2       <------NtERF2        <---------ALFIN1 <-----   accgtaacgcaatctcccaagagtctcgaggctcttcgagctcggctggcgaatgagtcgccttccctaaccgatttcatccacggcgatacctattcgg  8986900                                                                       --------->CCA1(2)                                                                      <---------ARR11(3)                                                                      --------->ARR11(3)                                                                <---------ANAC46                                                               --------->ATERF1(1)                                                               <------NtERF2                                                              ------>NtERF2                                                              <---------DEAR4(2)                                                              <---------ATERF1(1)                                                              <---------RAP2.3(1)                                                              <---------ERF1                                                             <---------RAP2.3(3)                                                             <---------RAP2.3(2)                                                             <---------DEAR3(1)                                                             --------->ATERF1(2)                                                             --------->DEAR3(1)                                                             <---------ATERF1(2)                                 --------->TOE2(3)          <------NtERF2                                 --------->TOE1(3)          --------->ATERF1(1)                           --------->ANAC58                 <---------ABI4(1)                           --------->ANAC46                ------>NtERF2                           --------->LBD16                 <---------ATERF1(1)                           --------->ANAC58                --------->LBD16               --------->ARR11(3)                          --------->HSFB2a(2)             --------->ANAC46       <------ZmHOX2a(2)                          <---------HSFB2a(2)             <---------LBD16       --------->AGP1     -- ----ANAC46  ---------->DOF2     <---------MYB59         <---------LBD16    ----------------->AGL1 <-   tggaagttggaaccaaaaagaaacctctcccgaaacctaaatggatgaaggaatcaattcccggcggcgagagatatgtccagatcaagaagaaattgag  8987000                                                                                         <---------YAB1                                                                                   --------->MYB46(3)                                                                                   <------NtERF2                                                                              --------->DEAR3(1)                                                                              --------->RAP2.6(2)                                                                              --------->ANAC46                                                                 ----------------------->TaNAC69(2)                                                                ----------->GT1  --------->AtMYB61                                                               --------->ALFIN1  <---------ALFIN1                                                               <---------AtMYB61 --------->DEAR3(1)                                                            <---------AtMYB61 --------->ANAC58                                                            <-----------RAV1(1)<-----------HVH21                                                      <---------ANAC58        --------->ANAC58               --------->DEAR3(1)                     <---------ANAC58       <------------AtMYB77  --            --------->ANAC46                        --------->ALFIN1         --------->DEAR3(2)   <--            <---------ALFIN1                      <---------ANAC58           --------->MYB46(3)  ----        <-----------HVH21                         <---------ANAC58         <---------ARR14(2)    <--- --------->TOE1(3)                               <---------MYB46(3)        --------->ARR14(2)-------- ------->ARR11(3)        <------ZmHOX2a(1)     <-----------HVH21<---------MYB46(3)------>NtERF2<----- --------ARR11(3) <---------DEAR3(1)  ----------------->AGL1<---------MYB46(3)------->GAMYB ---------   agaccttaagcttcacaccgtctgcgaggaagcgaaatgtcccaatctcggtgagtgctggtctggtggtgaaactggaaccgccaccgctacgattatg  8987100                          <-----------RAV1(2)                      --------->ZAT2                      <---------ZAT2                      --------->At4g35610                      <------NtERF2                   <---------LBD16                   <-------MYC3        --------->CCA1(2)<---------ZAT2    <---------ANAC46  <---------At4g35610 ---->ZmHOX2a(2)   ------->MYC3                        --------->ZAT2 -------YAB1      --------->ANAC46            <---------ARR14(2)                       -------------- ----->ARR11(3)   <---------O2             <---------MYB59                             <------------- ------ARR11(3)<---------REM1(2) --------->YAB1        <---------ZAT2                 <-------------- ->YAB1<---------ARR14(2)<---------At4g35610  --------->ARR14(2)           ----------->HVH21 <------- ----YAB1<-------TEIL<---------ATERF1(1) --------->MYB52(1)         <----------DOF2   <-------------- >ICU4 --------->ARR14(2)<------NtERF2--------->At4g35610   <---------GLK1(2)---------->DOF2 <-------   atccttggggatacatgtacacgcggctgcaggtatcatcatctaccgaatttgcccagcttgattctctcttttctctgaaagggcttctattttaggt  8987200  Previous    Next  AGI:  At2g20850.1    Description:  SRF1 (STRUBBELIG RECEPTOR FAMILY 1); kinase. Identical to Protein STRUBBELIG-RECEPTOR FAMILY 1 precursor (SRF1) [Arabidopsis Thaliana] (GB:Q06BH3;GB:Q06BH2;GB:Q06BH4;GB:Q93ZY8;GB:Q9MAS2); similar to SRF3 (STRUBBELIG-RECEPTOR FAMILY 3), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G03390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24112.1); similar to LRR receptor-like kinase [Solanum tuberosum] (GB:ABS89271.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Range:  from: 8982429    to: 8986460    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g20860.1    Description:  LIP1 (LIPOIC ACID SYNTHASE 1); lipoic acid synthase. similar to lipoic acid synthase family protein [Arabidopsis thaliana] (TAIR:AT5G08415.1); similar to putative lipoic acid synthase [Pisum sativum] (GB:ABA29155.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Elongator protein 3/MiaB/NifB (InterPro:IPR006638); contains InterPro domain Lipoate synthase; (InterPro:IPR003698); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 8986660    to: 8988307    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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