Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                <---------LBD16              --------->LBD16           ------>MYB83           --------->MYB52(1)           -------->P          --------->MYB52(1)          ------>MYB83          ------>MYB46(1)        ------->GAMYB        --------->MYB46(3)       --------->ANAC58      --------->ANAC58                                                  --------->ANAC58      --------->ANAC58                                                  --------->ANAC58   <-------TEIL                                                     --------->ANAC58 -------->At4g35610                                         --------->LBD16 ---------At4g35610                    --------->ANAC58    --------->ANAC46 ------>HSFB2a(2)                      --------->ANAC58    --------->RAP2.6(2)  <---------------AtSPL3 -------HSFB2a(2)                   <---------ZAT14        --------->ANAC58   --------->YAB1 ---------RAV1(2)                   --------->ZAT14        --------->ANAC58  <---------ATHB12 -->At4g35610------->GAMYB     --------->ZAT14            <---------LBD16  --------->WOX13(1) ---At4g35610<---------LBD16   <---------ZAT14    <-------GAMYB     --------->ANAC58 <---------YAB1 -WRKY38(1)------>MYB46(1) <---------ATERF1(1)   <---------ZAT6   ---------->DOF2   --------->SPL7 -HVH21--------->ANAC58  <------ZmHOX2a(1)       ----------->GT1<---------MYB52(2)<---------SPL7    <   ccagatgcaacccaaccggggagaagaggagactccagtgcaaggaagagactgttaatagccgcaactaaagcaaacaatcagggtacgattagctata  8986100                    <----------ID1                   ----------->GT1                        --------->ARR14(2)              --------->ANAC46                           <------ZmHOX2a(1)             --------------->AGL15                       --------->ATHB12             <---------------AGL15                      --------->ICU4                              -            <-----------------AGL1                      <---------YAB1                          <----            ----------------->AGL1                  <-----------TGA1                          -------      <---------YAB1----------->GT1                 <-----------HVH21                    <----------- --------->ZAT6 ---------->DOF2            <---------ANAC58  <------MYB83----------->HVH21   -------- ---------TOE2(3) --------->DAG2           <---------ANAC58  <------MYB46(1)            ----------->GT1   ctaacattaccattacacaaaagggaaaaacagagagaattaggggcttaccatcgtcaggattggtaagagcaagtgacaaggagggaagggagataag  8986200                                                       ------>ZmHOX2a(2)                                              ------>ZmHOX2a(2)                                             --------->GLK1(1)                                            <---------ARR14(2)                                            --------->ARR14(2)                                            <-----------ARR10                          <-----------RAV1(1)<------ZmHOX2a(2)                         --------->ARR11(3) <---------ARR11(3)                     <---------At4g35610    --------->ARR11(3)                  ===================================HOX2a_HOX2a                  <------ZmHOX2a(1)         --------->AGP1                  ==================================HOX2a_HOX2a                                 ----- --------->DOF2 --------->LBD16             <---------AGP1                                      <---- ------ID1     <-----------RAV1(2)         <---------CCA1(2)     --------->ARR14(2)             ----- -->MYB52(1)   =======================RAV--------->HSFB2a(2)     <---------ARR14(2)   <---------ARR11(3) ----------WRI1<---------LBD16           <---------HSFB2a(2)     --------->GLK1(2)    --------->ARR11(3) ->CCA1(2)    --------->TOE1(2)         --------------------->WRI1      --------->ZAT14--------->CCA1(2)   ggcaaaggagagaaaacccaggaagcagatgttgttgtctctcccagatctcatcgatctcattccgaatccagtagacactaagagagatatgtgagtg  8986300                               --------->At4g35610                               <---------At4g35610                                          ---------       <---------------------WRI1                                                           ---------     <---------MYB46(3)  <-----------ARR10                                        <---------DAG2 ---->ZAT14         --------->ANAC58                              --------->DAG2  <----------DOF2 -----ZAT14         --------->ANAC58        <---------YAB1       --------->DAG2<---------ARR11(3) ---->ZAT18       ---------->DOF2        --------->GLK1(2)      ---------->DOF2--------->ARR11(3)   aacagagtcgttgaaaattcaaaagcaaaacttagcagccaagaatatgattcgacagacgaaggaaaaaggtgagtaagagaactttatgttatcttaa  8986400                                                                               <---------ARR14(2)                                                                               <-----------ARR10   --------->DAG2                                           *TSS               --------->GLK1(2)  --------->DAG2                                        --------->ARR14(2)--------->ANAC46 ---------->DOF2                                        <---------ARR14(2)--------->ANAC58 >YAB1                                       <---------ANAC46             --------->AtLEC2 >TOE2(3)                             <-----------HVH21 --------->GLK1(2) --------->ANAC58   gagaaaagggaatgtttttttgcaagtgagtgagagagagcgtcactgtgtgaatgcgattcttcttagttcttacaagcaaatctaaacttgtgttttc  8986500                                                                           --------->AHL20(2)                                                                           --------->AHL20(1)                                                                           <---------AHL20(1)                                                                     --------->ANAC58                                                                     --------->ANAC58                                                                     <---------TOE2(3)                                                                  >>>>>>>>>>GATA-3                                                                  >>>>>>>>>>GATA-2                                                                  >>>>>>>>>>GATA-1                 --------->MYB52(1)                               >>>>>>>>>>GATA-4              --------->ANAC46                                   --------->YAB1              --------->ANAC58                                  <---------YAB1              --------->ANAC58          <----------DOF2   <---------AHL20(2)        <----------DOF2            --------->At4g35610        <-----------------AGL3 --------->YAB1<---------YAB1      <---------ANAC46          ---------->DOF2           --------->AHL20(2)<---------AHL20(2)   ----------->HVH21        <----------ID1            --------->REM1(1)<------ZmHOX2a(1)        -----   aaaatttgacgggcagacgaaacagagaagacgacaaagaagcttttaatgggcctacatttatttatgataaggaatataatgggctttagtttataaa  8986600                                                               ----------->HVH21                                                              <-----------HVH21                                                              <-----------TGA1                                                             --------->ANAC46                                                            *TSS                                               --------->TOE2(3)           --------->ARR14(2)                       <---------HSFB2a(2)     --------->TOE1(3)           --------->GLK1(2) <-------                       --------->HSFB2a(2)<-----------HVH21 ----------------->AGL1   --------->GLK1(2)              <---------ARR11(3)          <-----------TGA1 <---------At5g28300 ------>ZmHOX2a(1) ------->CBF  --------->ARR11(3)     <-------TEIL      <---------ICU4      <---------ARR14(2)<-------   caataggcccaaatgagaccttcttgtagaagaagagggttcatcgtcaccttaaactcattaccgtcaccggtgagattcctccaaaatcgggactttt  8986700                                                                  <---------ANAC58                                                            --------->HSFB2a(2)                                                          <------NtERF2                                                         ------>NtERF2                                                        --------->DEAR3(1)                                                        <---------DEAR3(1)                       <---                                                        <---------ANAC46                        <----                                                      --------->LBD16                          ------                                                      <---------ATERF1(1)                    --------                                                     <---------DEAR3(1)           --------->At4g35610                                                    --------->SPL7<---------ANAC58<---------At4g35610                            ------>NtERF2          <---------MYB52(1)           <---------DEAR3(1)                           <---------ALFIN1        <---------SPL1(1)           <---------LBD16<------               <-------TEIL--------->DEAR3(1)     <-----------HVH21      ------>ZmHOX2a(1) <---------LBD16   <------ZmHOX2a(1)     <---------ATERF1(1)      <---------SPL7 --------->HSFC1(2)  --------->At5g28300 --DAG2     <---------At4g35610                ------>ZmHOX2a(1) <---------HSFC1(2) <----------DOF2-- ---DOF2    --------->At4g35610           <---------GLK1(2) <---------HSFB2a(2)------>ZmHOX2a(1)<----   tctcaggacgtttgagatgcattcgcgctccgccttgctctatagattcctccgtccggcgtcgagatgcttctcctcttcctcggctgtaactccggtc  8986800    --------->ANAC58    --------->ANAC58    --------->ANAC55(2)                       <---------ANAC46  ---------->DOF2                            <------NtERF2  --------->SPL7                           <---------DEAR3(1) <---------MYB52(1)                      ----------->RAV1(2)                    --------->ANAC46 ------At5g28300                         --------->At4g35610                    <---------DEAR3(1) -----WRKY38(1)                          <---------At4g35610                   <---------LBD16 ----->HVH21                             <---------ZAT2            <------------MYB.PH3(1) ->LBD16                                 --------->ZAT2          --------->MYB52(1) -----HVH21                            <---------DEAR3(1)       ----------->HVH21       <---------ANAC55(2) ------->ANAC46                     --------->ZAT2            --------->HSFB2a(2)       --------->ANAC55(2) -----WRKY12      <---------GLK1(2) <---------ZAT2       <------NtERF2        <---------ALFIN1 <-----   accgtaacgcaatctcccaagagtctcgaggctcttcgagctcggctggcgaatgagtcgccttccctaaccgatttcatccacggcgatacctattcgg  8986900                                                                       --------->CCA1(2)                                                                      --------->ARR11(3)                                                                      <---------ARR11(3)                                                                <---------ANAC46                                                               --------->ATERF1(1)                                                               <------NtERF2                                                              <---------ERF1                                                              <---------DEAR4(2)                                                              <---------RAP2.3(1)                                                              <---------ATERF1(1)                                                              ------>NtERF2                                                             <---------RAP2.3(2)                                                             <---------RAP2.3(3)                                                             --------->ATERF1(2)                                                             <---------ATERF1(2)                                                             <---------DEAR3(1)                                                             --------->DEAR3(1)                                 --------->TOE2(3)          <---------ABI4(1)                                 --------->TOE1(3)          <------NtERF2                           --------->LBD16                  --------->ATERF1(1)                           --------->ANAC58                ------>NtERF2                           --------->ANAC58                --------->LBD16                           --------->ANAC46                <---------ATERF1(1)           --------->ARR11(3)                          <---------HSFB2a(2)             --------->ANAC46       <------ZmHOX2a(2)                          --------->HSFB2a(2)             <---------LBD16       --------->AGP1     -- ----ANAC46  ---------->DOF2     <---------MYB59         <---------LBD16    ----------------->AGL1 <-   tggaagttggaaccaaaaagaaacctctcccgaaacctaaatggatgaaggaatcaattcccggcggcgagagatatgtccagatcaagaagaaattgag  8987000  Previous    Next  AGI:  At2g20850.1    Description:  SRF1 (STRUBBELIG RECEPTOR FAMILY 1); kinase. Identical to Protein STRUBBELIG-RECEPTOR FAMILY 1 precursor (SRF1) [Arabidopsis Thaliana] (GB:Q06BH3;GB:Q06BH2;GB:Q06BH4;GB:Q93ZY8;GB:Q9MAS2); similar to SRF3 (STRUBBELIG-RECEPTOR FAMILY 3), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G03390.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO24112.1); similar to LRR receptor-like kinase [Solanum tuberosum] (GB:ABS89271.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Range:  from: 8982429    to: 8986460    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g20860.1    Description:  LIP1 (LIPOIC ACID SYNTHASE 1); lipoic acid synthase. similar to lipoic acid synthase family protein [Arabidopsis thaliana] (TAIR:AT5G08415.1); similar to putative lipoic acid synthase [Pisum sativum] (GB:ABA29155.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Elongator protein 3/MiaB/NifB (InterPro:IPR006638); contains InterPro domain Lipoate synthase; (InterPro:IPR003698); contains InterPro domain Aldolase-type TIM barrel; (InterPro:IPR013785) Range:  from: 8986660    to: 8988307    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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