Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                          <---------ALFIN1                                    =========================                        --------->AtMYB61                                   --------->ANAC58                       --------->MYB46(3)                                   --------->ANAC58                     --------->AtMYB61                                      <---------O2                     <---------ALFIN1                         --------->ATHB51                     --------->DEAR3(1)                       -------->HAHB4--------->TGA1a        --                  <---------ALFIN1                            <---------ICU4<---------TGA1a       ---                  --------->DEAR3(1)                          <--------ATHB1--------->bZIP60(2)   <--                  --------->AtMYB61                          --------->AHL20(2)                  ----                 --------->MYB46(3)                          --------->ICU4 --------->O2         <---               --------->AtMYB61                             <---------AHL20(2)                  ----               <---------ALFIN1                              <---------ATHB51    <---------ANAC55(2)            --------->ANAC46                                 <---------YAB1 --------->ANAC46     <---           <---------ZAT18                  ==========================================bZIP_DOF   <---           --------->ZAT14       <---------------------WRI1 --------->AHL20(2)   --------->ANAC55(2)           <---------ZAT14  --------->ZAT14 ---------->DOF2 <---------AHL20(1)<---------MYB52(1) ----    --------->ANAC46--------->MYB46(3) <---------ANAC55(2) --------->YAB1 <---------ALFIN1     ------   ctgaatacaccagtacaccaccaccaccactggacaacaatacataaaaagacacaaaccaaaataattgttagacccacgttacttaaaaaaaacatag  8962400          --------->DAG2         ---------->DOF2 ===================bZIP_DOF ---->ZmHOX2a(2) ------>CCA1(2) ----ZmHOX2a(2)                                                                                     < ----->ARR14(2)                                                                    --------->ANAC58 - ------ARR14(2)                                                                <------ZmHOX2a(1)    < ----->AGP1                                                                   <----------ID1        < ------ARR11(3)                                          --------->ZAT2  ============================ ------AGP1--------->DAG2                                <---------ZAT2  ---------->DOF2            - ----->ARR11(3)    ------->TEIL                    <-----------HVH21  ----------------->AGL1      <-- ----->ARR10  --------->CCA1(2)                 --------->AtLEC2    <----------ID1 --------->ANAC58--   atctgagtcgaaaaaggtatgaagcttatagagatggtatgcattatatcatgcatcacagctagggaagaggccaaaagaggacaagcgaaaaattcgg  8962500         <------ZmHOX2a(1)   <-------TEIL <-------PIF4 <-------MYC3 <-------MYC2 ------->MYC3 <-------MYC4 ------->PIF5 <-------PIF5 ------->MYC4 ------->MYC2 ------->PIF4----------->GT1 ---------TGA1a                                                   ---------->DOF2 -------->O2<---------AtMYB61                                  --------------->AGL15 ---------ANAC55(2)                                            <---------------AGL15 ---------O2--------->ALFIN1                           ---------->DOF2 =========bZIP_DOF                                    <---------WRKY12 -------->TGA1a                                       <---------WRKY45                           <--- ----------OsbHLH66                                   <---------WRKY38(1)              ----------->GT1 ---------->OsbHLH66                                <-----------HVH21              ---------->DOF2   acacgtgcataggagtggtcaaaaacatcacaagactaaaaatactaagaaaacagtcaaagcatctataaagagaattggaaacaaaagagttatatag  8962600                                                                    ---------->DOF2                                                                  ------>ZmHOX2a(2)                                                                  ======================HOX2a_HOX2a                                                                 <------ZmHOX2a(2)                                                                 --------->CCA1(2)                                                                 =======================HOX2a_HOX2a                                                                <---------ARR14(2)                                                                --------->ARR11(3)                                                                <---------ARR11(3)                                     >>>>>>>>>TBF1              --------->ARR14(2)                   --------->YAB1 >>>>>>>>>TBF1                 --------->AGP1                  -----         ---------->DOF2    >>>>>>>>>TBF1     --------->ALFIN1 --------->GLK1(1)               ------     <---------At4g35610 >>>>>>>>>TBF1  >>>>>>>>>TBF1   <---------REM1(1)                  ----------     --------->At4g35610xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)  <---------GLK1(1)         ----------->HVH21 ------GLK1(2)  --------->YAB1 >>>>>>>>>TBF1  ----------->GT1<------ZmHOX2a(1)   <------ZmHOX2a(1)   attctacagctaaaagaagaataagaagaagaagaagaagaagaagaagtgtagaatggtgaaggagatctaaaggagaataaggagagacctgaaagtg  8962700                                                                                                    -         --------->ARR11(3)                                                                    ------         --------->GLK1(2)                                                                     ------     >>>>>>>>>TBF1                                         ---------->DOF2           <---------GLK1(1) ---->At4g35610              --------->ANAC58    <---------ARR11(3)                --------->ATHB12 < --->ALFIN1                  --------->ANAC58    --------->ARR11(3)                <---------ICU4   - >DOF2  <---------GLK1(2)  <--------P           --------->At4g35610               <---------YAB1   --   ctgagaagaagaatcttggaagtagaagggtaagccttgaataagctagaagctctctggtaaaagctatggaaactcatgttgatgatttctcaaacct  8962800                                                                                              -------                                                                                             <-------                                                                                             ========                                                                                             --------                                                                                             <-------                 --------->At4g35610                                                         <-------                 <---------ZAT2                                                              <-------     ---------->DOF2                                                                         <------- <------ZmHOX2a(2)                                                                  ================= -------->ARR14(2)                                                                  <----------DOF2 --->TOE2(3)     --------->ZAT2                        <---------KAN4(2)    ---------->DOF2  -------- --->TOE1(3)     <---------At4g35610                   <---------ARR14(2)   ========================= ---------ARR14(2)                        *TSS    ---------->DOF2 ----------->GT1   <---------DAG2 -------->AGP1---------->DOF2          <---------DEAR3(1)  ------------>CBF--------->YAB1   <-------TEIL ------->At4g35610        <----------DOF2<------NtERF2 --------->ARR14(2) <---------YAB1  <---------SPL7   cagatccaaaagaaaacaaagctgagagctttggaagagaggctgcgaatgtgaaagaatatgcaatatggaaactatcaaagctactttagggtacgtg  8962900                 --------->ANAC46               --------->ANAC58               --------->ANAC46          --------->DEAR3(1)          ----------->HVH21        <---------RAP2.3(1)        <---------DEAR3(2)       <---------DEAR4(1)       <---------DEAR3(1)      <---------ORA47(1)      --------->ALFIN1     <-----------HVH21 -->TOE1(2)    --------->ANAC58 --TGA1a<---------ATERF1(1) ========================================bZIP_DOF ->TGA1a<---------ORA47(2)                                                                        <-- --ANAC46<------NtERF2                 <----------ID1                                      --------->AHL20(2) --ANAC58--------->ATERF1(1)           ----------->GT1                              ------->GAMYB --- --ANAC58--------->RAP2.3(1)          ------------------------>ANAC81 <------ZmHOX2a(1)  --------->ANAC58 --ANAC55(2) <---------ALFIN1        ---------->DOF2         <---------ANAC46      --------->ANAC58 ==bZIP_DOF------>NtERF2     --------->AHL20(2)              ----------->GT1       --------->ANAC58 ->ANAC55(2)<------NtERF2    <---------AHL20(2)   ---------->DOF2   <---------TOE2(3)    --------->ANAC58 ==bZIP_DOF----------->RAV1(1)---------->DOF2---------->DOF2--------->MYB59      --------->MYB52(1)   agagagaggtcggcgacacacaaaacaaaatttaaagaaaaaagaaaaaaagaaaagacagtgaggtatttaggaaattggagtaacgcccaagtaaatt  8963000        <----------DOF2    --------->KAN4(2)   <---------KAN4(1)                  <---------At4g35610                                           -   <----------TaMYB80                 --------->At4g35610                                          <-   --------->KAN4(1)            --------->AHL20(2) <---------TOE1(3)                               <-  ---------->TaMYB80        --------->AHL20(2)     <---------TOE2(3)                       --------->ICU4  <---------KAN4(2)       ----------->GT1 --------->ARR14(2)                           ----------->RAV1(1) -------TOE2(3)          <---------TOE2(3)<---------ARR14(2)                      ---------->DOF2  <- ------>MYB59           ---------->DOF2   <---------GLK1(2) <----------DOF2     <----------DOF2   <--   taggtatattcttttttttttttttttaaagtaaataaacagcagatttgtttagggtttgactttctctcaaaactcgagactttaagcgacattatgt  8963100                              <---------AHL20(1)                              --------->AHL20(1)                             <---------AHL20(2)                            <-----------------AGL3                          <---------AHL20(2)              <---------RVE1(1)              <---------CCA1(1)             --------->ARR11(3)        --------->LBD16  --------->AHL20(2)       <---------LBD16  <---------YAB1      <---------ANAC46<---------ICU4 -------->LBD16       --------->YAB1                                   <---------YAB1 --------ANAC46      <---------YAB1                     --------->ARR14(2)         --------->AHL20(2) --------ANAC58   <---------YAB1                        <---------ARR14(2)    <---------YAB1 --------ANAC58   <---------AHL20(2)          --------->MYB46(3) <---------YAB1    <---------AHL20(2) -------LBD16<---------ARR11(3)<---------AHL20(2) <-----------RAV1(1) <-----------GT1   tccgcgttccctggagattttttattattatatatatttggaattcgaacaactgttggattcgattttgattttcatttctgattttatttggaatact  8963200                                                              <---------YAB1               --------->YAB1      --------->TOE2(3)        <-----------GT1 --------->YAB1       --------->DAG2           <-----------GT1         ------->TEIL       <-------TEIL      ---------->DOF2        <---------ICU4            <---------AtLEC2<---------AHL20(2)       <XXXX   --------->YAB1           --------->AHL20(2)       --------->AtLEC2 --------->AHL20(2)    <--------  <---------YAB1        ----------->GT1           *TSS<-------TEIL --------->YAB1      <----------DOF2   gtatatgataaagctaataagaagaatggaataaatacctcattcacttctatacatgcatgttacaattcataaaattcataactaaactttttatgtt  8963300  Previous    Next  AGI:  At2g20800.1    Description:  NDB4 (NAD(P)H DEHYDROGENASE B4); NADH dehydrogenase. similar to NDB3, NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G21490.1); similar to NDB1 (NAD(P)H DEHYDROGENASE B1), NADH dehydrogenase/ disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G28220.1); similar to NDB2 (NAD(P)H DEHYDROGENASE B2), disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G05020.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN66469.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO16606.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO41237.1); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide Range:  from: 8960333    to: 8962842    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g20805.1    Description:  similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT1G11510.1) Range:  from: 8963250    to: 8963818    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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