Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                         <-----------GT1           ------->TEIL           --------->At4g35610    <---------DAG2            --------->YAB1      --------->YAB1        --------->TOE2(3)            --------->YAB1                         -----     <-------TEIL         <-------TEIL <<<<<<<<<<<<<<<<<LFY<---------YAB1                      <----- --->HVH21 <---------At4g35610    <----------DOF2    <----------DOF2   ------->TEIL---------->DOF2   catcaaattcatcatctgcacattcaaattcattaactttttaacaatggtctctctttttataatgaacatgaacatagtaagaaaaagaaaacaaatc  8932700                                                                                   <---------GLK1(1)         <---------TOE2(3)                                                         --------->GLK1(1) --------->ANAC58            ----------->GT1                                  ----------->GT1 --------->ANAC58        ---------->DOF2       <------ZmHOX2a(1)   <---------At4g35610 ---->YAB1           <---------ANAC55(2)     ----------->GT1       --------->At4g35610 ----ATHB12<------ZmHOX2a(1) <----------ID1 <------ZmHOX2a(1)   ---------->DOF2<------ZmHOX2a(1)   atcaagaaattgaggagagaattacatgaaagggagaaaccagagaggaggaaaatgggaagaagagaaagcagacagtaaggagaaatctccattgttt  8932800                                                    <---------MYB52(1)                                                <-----------GT1                                  <---          ------>ZmHOX2a(1)                 <----------DOF2                           <----------DOF2  <---------GLK1(2)                    <----------DOF2            <-----------RAV1(1)*TSS        ----   ctctgattcttcctctcttctcttctcttctcttctcttctcttttctttttccattacttccattttttgtgggggtatttctgtttcttttttagtaa  8932900                                                                                   ------>MYB46(1)                                <---------ICU4                                     --------->MYB52(1)                                -------->ATHB1                                     ------>MYB83                                --------->YAB1    --------->AHL20(2)             <---------MYB111(1)                                --------->ATHB12<---------YAB1                   <---------MYB46(2)                                <--------HAHB4--------->YAB1                     <---------MYB52(2)           <------ZmHOX2a(1)   --------->ICU4 <--------HAHB4                     <---------MYB59 ---------->DOF2               <---------ATHB12--------->TOE2(3)               ------->TEIL ------At4g35610         <---------LBD16     <---------YAB1               <------------CBF <---------YAB1 ----->At4g35610   ------------>CBF    ---------->DOF2              <------------CBF>>>>>>>>>MYB98   gatgaaagttataggacgagagacaatttcggaatcattacaaaagtatcattaatatggggttttgagaaattgacattgaacctaacccatattatag  8933000                  <---------ZAT14                  --------->ZAT14            <-----------HVH21         <---------ANAC46         <---------ANAC58         <---------ANAC58        <------NtERF2       ------>NtERF2   <---------ZAT14                    <---------ZAT14          --------->GLK1(2)      --------->DEAR3(1)                               ----------->GT1             <-----------ARR10      <---------DEAR3(1)                             <---------ANAC46              <---------ARR11(3)      --------->ANAC46 --------->ZAT14             <---------WRKY18(1)             --------->ARR11(3)   --------->ANAC46    --------->At4g35610        ----------->HVH21       ----------->GT1   cctaaacgacgccgtgtcagtactctgctctaaaccctatacttgagtaagcttgacgagtaaacagaagttgaattcgttacaaaatctatcccaaagg  8933100                                                                              --------->DEAR3(1)                                               --------->TOE1(3)             --------->ANAC58                                        --------->TOE1(3)                    --------->ANAC46                                 --------->TOE2(3)                           --------->ANAC58              *TSS        --------->TOE2(3)    --------->TOE2(3)           <-----------GT1           ------>ZmHOX2a(1)     --------->TOE1(3)  <---------GLK1(2)    <-----------HVH21       <-----------GT1   ----------->GT1--------->TOE2(3)         <---------GLK1(1)   tttgatttttttcctccaacttgcaaaatgttaaaccttaaaccttaaaccttagcttctctgttttgaaatctgtatcacggcccaagtatgaagcatc  8933200                                                                 ------>NtERF2                                                             --------->ANAC46                                                           <---------ALFIN1                                                         <-----------------AGL1                                                      <----------DOF2                                                      <---------DAG2       --------->ANAC58                                                --------->At4g35610        --------->ANAC58                                                --------->ZAT2   --------->LBD16 --------->DEAR3(1)                                                <---------At4g35610        --------->ANAC46      ----                                                --------->HSFC1(2)       <---------ALFIN1        ----                                <-----------GT1 --------->HSFB2a(1)      --------->AtMYB61       ----                        --------->ANAC58        <---------HSFB2a(1)  --------->ANAC58 <---------MYB52(1)    <<<<<<<<<TBF1       --------->ANAC58        <---------HSFC1(2)   --------->ANAC58<-------GAMYB  < <<<<<<<<<TBF1        ---------->DOF2         <------ZmHOX2a(1)<---------LBD16--------->AtMYB61 -----   ttcttcttcttcgtcttgttcttccaaagccaaattacattctcagaaggagcttccttttccactccggcaagaccacaccatcgccgttggaccctta  8933300                          ------>ZmHOX2a(2)                          <---------LBD16                         --------->ARR14(1)                        --------->ARR14(3)                        <---------ARR14(3)                        --------->ARR11(3)                        <---------ARR14(2)                        --------->ARR14(2)                        <---------ARR11(3)                   <------NtERF2  ------>ZmHOX2a(2)              --------->MYB55(2)<---------ARR14(2)           <-----------HVH21    <---------ARR11(3)         <---------At4g35610   <---------GLK1(1)      --------->ZAT14   --------->AGP1      --------->At4g35610<------ZmHOX2a(2)      <---------At4g35610--------->CCA1(2)                            XXXXXXXXXXXXXXXXXXXX>MIR3440B-3P      <---------ZAT14  --------->GLK1(1)                              <---------ANAC58      --------->ZAT2   <---------GLK1(1)<---------At4g35610  <---------AtLEC2      <---------ZAT2  ----------->ARR10 --------->At4g35610 <---------MYB46(3)     --------->ARR14(2) ----->ANAC46 <---------DEAR3(2)--------->ARR11(3)      <-----------RAV1(1)        --------->GLK1(2) ----->ANAC58 <---------MYB46(3)--------->ARR14(2)      --------->ALFIN1           <---------ARR14(2) ----->ANAC58<---------ANAC46  --------->GLK1(1)    ---------->DOF2   <---------ANAC58           <--- ---------ALFIN1<-----------HVH21<------ZmHOX2a(2) --------->YAB1     <---------ANAC46 ----------->GT1 ---->SPL7--------->DEAR3(1)--------->LBD16       <---------YAB1<---------MYB46(3)<---------GLK1(1)   cgacactctgcagcgtcgggtcgcgagatccggagatccctctgcttcgattatcaaagtgttggatggatggcttgatcaagggaatctggttaagact  8933400          <XXXXXXXXXXXXXXXXXXXXMIR172C/D                                               <---------ANAC58          <XXXXXXXXXXXXXXXXXXXXMIR172E                                                 <---------ANAC46          <XXXXXXXXXXXXXXXXXXXXMIR172A/B                                            <---------MYB52(1)  <---------ZAT2                                                                   <-------GAMYB  --------->At4g35610                <---------At4g35610                          <-----------RAV1(1)  <---------At4g35610        ---------->DOF2                                    ------>ZmHOX2a(1)  --------->ZAT2       <---------HSFB2a(1)                --------->LBD16   <---------GLK1(1)  <---------GLK1(1)    --------->HSFC1(2)         --------->ANAC58      --------->HSFB2a(2)  --------->GLK1(1)    <---------HSFC1(2)         --------->ANAC58      <---------HSFB2a(2) <-------- ------LBD16         <---------ARR11(3)  <---------MYB52(1)            <---------LBD16 <---------ANAC58   tcggagctccatagcatcatcaagatgcttcgaaagttcagccgtttctctcacgctctccaggtctctcatttctggattcctctgttgcttactttca  8933500                                                   --------->TOE2(3)                                                   --------->TOE1(3)                                                 <---------ARR11(1)                                                 --------->ARR14(2)                                           ------->TEIL                                           <---------ARR14(2)  --------->ARR11(3)                   -      <-------TEIL                         --------->ARR14(2)  <---------ARR11(3)          --------->ICU4  --------->DAG2         <-----------GT1   --------->GLK1(2)----------->GT1             <---------YAB1 ---------->DOF2<-----------RAV1(1)<---------YAB1<---------ARR11(3)            ---------->ID1 <------ --DOF2    <----------DOF2       --------->YAB1 <---------CCA1(2) <----------DOF2 <---------YAB1    <   aaaaaaagttcatcttttttgttgttgttactctgtgataatacgaatccaaatcttaaaaatggtatcttttctcttcttgttgttattgtgatgatgt  8933600  Previous    Next  AGI:  At2g20700.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28280.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69731.1) Range:  from: 8931975    to: 8932885    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g20710.1    Description:  pentatricopeptide (PPR) repeat-containing protein. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G28020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO69728.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885); contains InterPro domain Tetratricopeptide region (InterPro:IPR013026) Range:  from: 8933114    to: 8934925    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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