Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                  <---------At5g28300                  ----------->GT1                                              <-----------GT1             --------->YAB1                                    --------->ARR11(3)            <---------YAB1                           <----------DOF2  --------->MYB46(3) <----------DOF2  <---------ZAT6                <-----------GT1<---------ARR11(3)             -------   taacttttactaaaatcatagtgaaaataacaaaaaaccatggtctctataaactctttggtgaagatttcaactactaaattaccatgagatagatggt  8865700                                                                        --------->At5g28300                                   <---------RVE1(1)                   ----------->GT1                                   <---------CCA1(1)                   <---------ANAC46        ------                                  <---------ARR11(3)           <------ZmHOX2a(2)               <-----                            --------->YAB1                    --------->ARR14(2)               ------                           <------ZmHOX2a(2)                  <---------ARR14(2)  --------->ANAC46              <---------AHL20(2)  --------->ARR11(3)          <---------ARR11(3)  --------->ANAC58         <---------YAB1   <---------ARR11(3)                  --------->AGP1      --------->ANAC58    ----------->GT1       --------->ARR11(3)         <---------ICU4  --------->ZAT14         -------- ---->GT1--------->ICU4  --------->YAB1          <-----------GT1     <---------ZAT14         <-------   caaaaattgtcaatattgaatttacaaggatcatgagatatttcaacaattttactaatgaccagatccaatgcagtgaattagacgaaactatgacttc  8865800                                                                                                  <--                                                                                                 ----                                                                                                 <---                                                                                            <--------        ---------->DOF2                          ---------->DOF2                            --------- --->ZAT18            <---------ANAC58        <XXXXXXXXXXXXXXXXXXXXMIR858           ----------->GT1 - ----ZAT14            <---------ANAC58        <---------ETT(2)              ------>ZmHOX2a(1)   ----- --->ZAT14       <---------ANAC58     ----------->HVH21                <---------GLK1(1)    --------- ->bZIP60(1)     <---------ANAC58    <---------At4g35610  --------->YAB1<---------ARR14(2)  <-------- --bZIP60(1) ---------->DOF2         --------->At4g35610 ----------->GT1--------->ARR14(2) --------->AHL20(2)   actaggttgtgaaagaaaagcttgtcttgcagttttgtctgcgaccggtcgaaaagagaatgaaaatatgtcgaaatcctcttcaaacgtgaaataaatt  8865900                                                                      <---------PCF2                                                                      --------->PCF2                                                                      --------->PCF5                                                                      <---------PCF5                                                                      --------->TCP20                                                                      --------->TCP16(1)         <------ZmHOX2a(1)                                            --------->TCP11(2)         --------->YAB1                                               --------->TCP15(1)        ----------->GT1                                              <---------TCP23       <---------TOE2(3)                                             ----------->TCP11(1)     --------->ICU4                                                  <---------TCP15(2)   --------->YAB1                                                    <---------TCP16(2) <-----------HVH21                                                ------->MYC3 -------At5g28300                                                 <-------MYC3 ----->MYB52(1)                                                  --------->O2 --------GT1                                                     --------->TGA1a -AHL20(2)                                            --------->AHL20(2) >AHL20(2)                                           --------->AHL20(2)                             - ------>GAMYB              <-----------GT1           <---------AHL20(2)                             - ---->AHL20(2)        <---------MYB46(3)         --------->AHL20(2)--------->ALFIN1                <- >AHL20(1)        <---------YAB1             <---------YAB1      <---------TGA1a    --------->ARR11(3) -AHL20(1)  --------->AHL20(2)            <---------YAB1         <---------O2       <---------ARR11(3)   aactgtcataaggataaattatgtttgttcaaccatacagaaatatgatgaataaataattttagacatgtgggcccatgtaagaagaactcactaaatg  8866000                  ----------->GT1        <-------GAMYB        --------->At5g28300                                           <---------ARR11(3)       ----------->GT1                                          <---------ZAT14   --------->ARR14(2)          --------->DAG2                   --------->ZAT14        --------->ARR11(3)   <---------ARR14(2)         ---------->DOF2                  <---------ZAT6 ------>ZmHOX2a(2) ----------->CBF <---------DEAR3(1)                <---------WOX13(1) --------->ARR11(3) ---------------->AGL1  <------------CBF          <------------CBF   <---------GLK1(1) <---------ARR11(3) ----------------AG ----------->HVH21            --------->ATHB12    *TSS <---------YAB1   agcccaatacggttaatgggctgtgacattgaaaaagaggttgtaatgggctgattgattctatagtgtagaaatcttgatcgaggggttatcttctccg  8866100                                      --------->ATHB12                          <---------AHL20(2)                          <---------YAB1                       <---------AHL20(1)                       --------->AHL20(1)                                           --------->YAB1                       --------->AHL20(2)                                          <---------ATHB12                      <---------CCA1(2)              <---------At4g35610         --------->WOX13(1)                <<<<<<<<<TBF1        <---------YAB1<---------HSFB2a(2)        ------>ZmHOX2a(1)           <---------GLK1(2)       <----------DOF2 --------->HSFB2a(2) <---------AHL20(2)   attccaatatttagattcttcttcatatattattgtgctttgattagagagttgcagaagagttttttttgttttaattcctgcaatcagagagttttcg  8866200                                                                             <---------MYB52(1)                 <---------HSFB2a(2)                                      ===========================                 --------->HSFB2a(2)                                      ------>ZmHOX2a(2)             <---------GLK1(2)                                  ------>ZmHOX2a(1)            <---------HSFC1(2)                                  =================HOX2a_HOX2a            --------->HSFC1(2) <---------ZAT6                  <---------ANAC46           --------->ANAC58  <---------ANAC46               --------->ARR14(2)           --------->ANAC58  <---------ANAC58               <---------ARR14(2)    --------->ZAT14     --------->ANAC58        <---------ANAC58      <-----------GT1   <---------WOX13(1)        <-----     --------->ANAC58 <-------TEIL             <----------DOF2 --------->TOE2(3)  <---------ZAT14   <   atagcacaagcacaagcttctcgattcgtttgagtgttcaaatttcaagctttttacaaggggttccttagattgatctgttactgtagagatggctcca  8866300                                                                     ===============================HOX2a_HOX2a                                                                     ================================                                                                    <------ZmHOX2a(2)                                                                    ====================HOX2a_HOX2a                          --------->ALFIN1                          ================================HOX2a_HOX2a                         <------NtERF2                             --------->ARR14(2)                        <---------DEAR3(2)                         <---------ARR11(3)                        <---------ORA47(2)                         <---------ARR14(2)                        <---------DEAR4(2)                 --------->LBD16                       <---------DREB2C(2)                <---------ANAC58                   --------->ATERF1(1)                    <---------ANAC46                   <------NtERF2                          <---------ANAC58                 --------->ETT(1)                         <---------ANAC55(1)                 <---------ANAC46                    <---------HSFC1(2)         --------->MYB52(1)                          --------->HSFC1(2)         ----------->RAV1(1)                         --------->HSFB2a(1)      ------>ZmHOX2a(2)<---------DEAR3(1)      --------->TOE2(3)  <------ZmHOX2a(1)     <------ZmHOX2a(2) --------->ALFIN1        --------------------->WRI1    <---------ARR14(2)<------NtERF2          -------->P<---------ARR14(2)    --------->ARR14(2)<---------------------WRI1    <---------TOE1(3)------>ZmHOX2a(2)    <---------ARR11(3)<---------ABI4(1)   --------->At4g35610   <---------TOE1(3)            <------ZmHOX2a(1)   <------ZmHOX2a(1)<---------DEAR3(1)    <---------At4g35610   <---------TOE2(3)        ---------->DOF2 =========HOX2a_HOX2a --------->ATERF1(1)------->TEIL<---------HSFB2a(1)         <------ZmHOX2a(1)  - ----ALFIN1   --------->ALFIN1        <---------REM1(1)--------->ARR14(2)       <----------ID1      < ---------LBD16<-----------HVH21 ---------->DOF2    <---------TOE2(3)===================HOX2a_HOX2a<-   actcaggatcccaacagtgtcggaggcggtgcgaagaaagatgaagctaccttgaaggttccgtctaaggatcccaagaagaaggacgagaaaaaggatg  8866400                                                                          --------->ARR11(3)        --------->DAG2                                                    --------->GLK1(2)       ---------->DOF2                                                    --------->ARR14(2)    <------MYB46(1)                                                       <---------ARR14(2)    <------MYB83                                           <---------ANAC46    ----------->GT1                                        <---------ANAC58   --------->MYB59                                         <---------ANAC58                       <-- =====HOX2a_HOX2a                             ------>ZmHOX2a(1) <---------ANAC58                 <--- -------->ARR14(2)                        --------->ARR14(2)    <---------bZIP60(2)  <---------At4g35610 ---------ARR14(2)        <---------MYB52(1)  <----------DOF2   <---------ANAC46     --------->At4g35610 -----ZmHOX2a(1)  <----------DOF2         <---------ARR14(2)    <---------ANAC58  <-------TEIL   ----   aggatttggtaaagtttcttctttctcggttttttgatttatcgaatcctttttcgacattgtgtgtcgtgtttagtatctgggttcatcagaaacgaat  8866500                          <------MYB46(1)                 ------>ZmHOX2a(2)                --------->CCA1(2)               <---------ARR11(3)               <---------AGP1               <---------ARR14(2)               --------->AGP1   <---------AHL20(2)               --------->ARR11(3)               --------->ARR14(2)             ----------->ARR10  <---------YAB1      --------->ARR14(2)  <------MYB83      --------->GLK1(2)<---------MYB52(1)      <---------ARR14(2) --------->MYB59                                                     -------- -------AHL20(2)<------ZmHOX2a(2)                                            <---------TOE2(3) ------AHL20(2)<---------ARR14(3)                                <-------GAMYB      <---------AHL20(2) ----->AHL20(2)--------->ARR14(3)--------->ATHB12         --------->ALFIN1   <---------TOE1(3)   ----   taatttcaaatctgtaagatctgcagttaggtttttaattggagtctcgatcgagttgaagtaggggtgttatagaattagggtttttaatctggcaaag  8866600  Previous    Next  AGI:  At2g20580.1    Description:  AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding. similar to AtRPN1b/RPN1B (26S proteasome regulatory subunit S2 1B), binding [Arabidopsis thaliana] (TAIR:AT4G28470.1); similar to hypothetical protein OsI_023481 [Oryza sativa (indica cultivar-group)] (GB:EAZ02249.1); similar to hypothetical protein OsJ_005215 [Oryza sativa (japonica cultivar-group)] (GB:EAZ21732.1); similar to hypothetical protein OsI_005698 [Oryza sativa (indica cultivar-group)] (GB:EAY84465.1); contains InterPro domain Armadillo-type fold; (InterPro:IPR016024); contains InterPro domain 26S proteasome regulatory complex, non-ATPase subcomplex, Rpn1 subunit (I Range:  from: 8866069    to: 8871946    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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