Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                                   <---                                                                                                 ----                                                                                              -------                                                                                   <----------DOF2                                                                     --------->ANAC58  <---------At4g35610                                                              --------->AtLEC2    ------>ZmHOX2a(2)                   --------->TOE2(2)                   <---------At4g35610        =================== --------DOF2      --------->TOE1(2)                <-------TEIL     --------->ANAC58  --------->At4g35610 ------GT1        --------->YAB1            <-------TEIL ----------->HVH21      <---------ARR11(3) -->AHL20(2) <---------MYB59               --------->CCA1(2)<---------bZIP60(2) --------->ARR11(3)   ctttcacatttcagacctaaacataagaaaattgacaaaatggagatacatcgattcatatgacatggaaaacgaaattagtgatctttagctcaaatga  8838400                                                                         ------>ZmHOX2a(1)                                                                     <---------ARR14(2)                               ----------->GT1                       --------->ARR14(2)                              --------->ANAC46                ------>ZmHOX2a(1)       <------ZmHOX2a(1)      --------->ANAC58              ====================HOX2a_HOX2a       ---     <---------TOE2(3)        --------->ANAC58              ------>ZmHOX2a(2)          <------MYB83--     <---------TOE1(3)       <---------LBD16               =====================HOX2a_HOX2a     -----  --------->DOF5.7(2)        ------->TEIL                  <------ZmHOX2a(2)           <---------ANAC58  <---------MYB52(1)       <---------SPL7                 --------->ARR11(3)           <---------ANAC58 --------->TOE2(3)      <------------------SPL14          --------->ARR14(2)           <------MYB46(1) ------bZIP60(1)     --------->ANAC58                     <---------ARR14(2)          --------->MYB46(2) ----->bZIP60(1)     --------->ANAC46                     <---------ARR11(3)          <---------AtMYB61 ---->HVH21          --------->ANAC58                    --------->GLK1(1)            --------->MYB111(1) =============HOX2a_HOX2a<---------------AtSPL3          <---------GLK1(1)            <---------MYB46(3)   catcgttaaggacatcgaaacacacacaatgtacggaaaatagagagagagagagagagagatccttacagggtcctgaagaacaggtttggtgtcatca  8838500                                                                                                 <---                                                                                                -----                                                   --------->LBD16                              <----                                                  --------->DEAR3(1)                            -----                                          <------MYB46(1)                                      <-----         ---------->DOF2                  <------MYB83                                         ------       ----------->HVH21                 --------->MYB59                                       ------    --------->ARR14(2)                  --------->SPL7                                         <-----    <---------ARR14(2)                 <---------MYB52(1)                                     <------   <------MYB46(1)                    <---------SPL7<------NtERF2                             -------   <------MYB83                      <---------ANAC46                                        <------- ------>ANAC46                       <---------ANAC58                                  <----------DOF2 ----->GAMYB                         <---------ANAC58<---------GLK1(2)           -------------------- ---->MYB52(1)               <-----------GT1     <---------LBD16 <---------GLK1(1) <----------DOF2   acggcaggtctgaaaggaggtttctgagttttaacagttgcgttcggtctcgccggagtctctgtagatttcttcatcgttttctctttctttttcgccg  8838600                                                                      <-------PIF5                                                                      ------->PIF5                                                                      <-------MYC4                                                                      ------->MYC2                                                                      <-------MYC3                                                              --------->MYB46(3)                                                            --------->ARR14(2)                                                            <---------ARR14(2)                                                         --------->ANAC55(2)                                                         --------->ANAC58                                                         <---------ANAC55(2)                                                         --------->bZIP60(1)                                                         <---------bZIP60(1)                                                         --------->ANAC58                                                       --------->MYB52(1)                                                      ----------->HVH21                                                      ----------->TGA1<-------MYC2                                                     ------->MYC3     ------->PIF4                                                     <-------MYC3     ------->MYC3                                                     <-------MYC2    <---------ANAC58   ----------->GT1                                   ------->MYC2    <---------ANAC46 --------->GLK1(2)                                   <-----------HVH21------->MYC4 ---NtERF2                                          --------->ANAC58 <---------ANAC55(2) ->NtERF2                                           --------->TGA1a  <---------ANAC58 -----ATERF1(1)                                     --------->bZIP60(2) ---->LBD16                                         <---------TGA1a  <---------TGA1a ----DEAR3(1)                                       <---------ANAC55(2)      <---------MYB46(3) --->DEAR3(1)                                       <---------O2     --------->O2 --->ATERF1(2)         <---------DAG2               --------->ANAC55(1)      --------->MYB52(2) ----ATERF1(2)         =======================================bZIP_DOF<-------PIF4 ---LBD16--------->MYB52(1)                         --------->ANAC58 <---------O2 -->ATERF1(1)          <----------DOF2              --------->ANAC55(2) <-------TEIL --RAP2.3(1)  *TSS  <-----------GT1                 --------->O2     --------->TGA1a  --------------- ->WRI1 --------->RVE1(1)       <---------ARR14(2)  --------->ANAC46------------>OsbHLH66   gcgaatcgaaatatcggaaatttcacttttaggggatttagtggcgattttcacacgtgacggaaccactcacgtgcattagttgggctctgaatatagt  8838700                                                                 ----------->TBP                                                                 --------->AHL20(2)                ------------>CBF                                 XXXXXXXXXXXXXXXXXXXX>MIR2112-3P             <-------GAMYB                                     <----------DOF2            ----------->GT1                                    <---------DAG2           <---------TOE2(3)                                <<<<<<<ZML2   <------------CBF--------->At5g28300       <------------CBF                                     <---------ARR11(3)            --------->LBD16      --------->ATHB12                                   <---------HSFC1(1)             <------NtERF2   <------------CBF  <---------AHL20(2)                  <---------HSFB2a(2)          <---------DEAR3(1)  ------------>ATHB5 --------->AHL20(2)                  --------->HSFC1(1)          --------->ATERF1(1) -->AGL3<---------WOX13(1)        ---------->DOF2        --------->HSFB2a(2) >>>>>>>>>WRKY18   aggcccattgattggggttacaattttttatatcaaaaaagcccattttgttttctcttctagaactttatatacacattgacgagggtcgccgtaaaac  8838800                                                                          <---------SPL7                       --------->TOE1(3)                                <---------TOE2(3)               --------->LBD16  <---------GLK1(2)                       --------------->AtSPL3              --------->HSFB2a(2)                                --------->ARR11(3)              <---------HSFB2a(2)                          --------->ANAC58          <---------At4g35610  <---------At4g35610         --------->ANAC46   *TSS   --------->At4g35610  --------->At4g35610         --------->ANAC58                      ---- <---------At4g35610   --------->TOE2(3)      --------->AHL20(2) <---------ARR11(3)            <-----   ctctgctacttctgctccagaaaaaccctaatcagcttctcgtctccataaattcagaaccaagaaacatctctgaggtaccatcttggtttgccaattt  8838900                                    <---------ZAT2                                    --------->At4g35610                                    <---------At4g35610                       --------->ARR11(3)                                 <---------MYB52(1)                           <---------ARR14(2)            <-----------GT1     <-----------TGA1                              ------->TEIL       <----------DOF2<-----------GT1                                         --------->ARR14(2)     --------->At4g35610        <-----------HVH21                            <---------CCA1(2) ----->TOE2(3) <---------DAG2  --------->bZIP60(1) <-----------GT1 --------->MYB52(1) ----ARR11(3)  <----------DOF2 --------->ETT(2)    --------->ARR11(3)     <---------ARR11(3)   cttaatcagctttgttactttttttttctcttgtcgtcagctctaacttgaattatctccacagagactaaacgaagatgtatcttcagtgctatatcaa  8839000                                                            <<<<<<<<<TBF1                                               --------->ARR11(3)                                               <---------ARR14(2)                                               <---------ARR11(3)                                --------->TOE1(3)        <<<<<<<<<TBF1                          <---------TOE2(3)    --------->ARR14(2)                          --------------->AtSPL3      <<<<<<<<<TBF1                          <---------TOE1(3)    <---------ARR11(1)                  --------->ANAC46             <-----------ARR10                    <---------AHL20(2)    ----------->GT1    <---------MYB52(2)     <---------CCA1(2)        --------->TOE2(3)<-----------GT1   cgagaagggtgagaaggtttacacaactaaggtaccttcacactgttcatatcttcttcttcttcttcagtattcttaattcgtattttataacttcgtt  8839100                                                         <----------DOF2                                                       ------>MYB46(1)                                                       ------>MYB83                                                     <---------MYB59                                                    --------->DEAR3(2)                                                   <---------DOF5.7(2)                                                   <---------At5g28300                     <---------AHL20(2)           <-----------GT1                                 <--                    --------->AHL20(2)         <---------ZAT6            <-------TEIL   --------->AHL20(2)             <---------LBD16                <------ZmHOX2a(1)<---------YAB1    <-------TEIL    ------   catgtgtttctgtgattcggaaataaatctctgtttttgttcttgaggagagttaccgactttgttataggtagtttcatatacattcaattcaatagtt  8839200                <---------TOE1(2)             <---------ANAC46             <---------ANAC58                                                       <------ZmHOX2a(1)    ----------->GT1    --------->ANAC46          --------->TOE2(3)                <---------TOE2(3)   ----------->GT1<---------ARR14(2)             --------->TOE1(3)                <---------TOE1(3)  <---------TOE2(3) <-------TEIL           <---------ANAC58                   <---------At4g35610 <--  <---------TOE1(3)--------->CCA1(2)       <---------ANAC58            --------->ARR11(3)      <----- -------HSFB2a(2) --------->ARR14(2) <---------YAB1                    <---------ARR11(3)      ------ --->ARR11(3)<---------ANAC58 <----------DOF2    --------->YAB1       <---------CCA1(2)  --------->CCA1(2)   cttgaaggttaaatttcgtagatacactgaagctttgttatgtttgcttaatcttaaaatttgctgtttgatatatcttaagctaaggaagatagaagtt  8839300  Previous    Next  AGI:  At2g20480.1    Description:  similar to unknown [Populus trichocarpa] (GB:ABK93010.1); similar to hypothetical protein OsI_030526 [Oryza sativa (indica cultivar-group)] (GB:EAZ09294.1); similar to Os09g0446000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063306.1) Range:  from: 8837646    to: 8838614    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g20490.1    Description:  EDA27/NOP10 (embryo sac development arrest 27); RNA binding. Identical to H/ACA ribonucleoprotein complex subunit 3-like protein [Arabidopsis Thaliana] (GB:Q93XX8;GB:Q9SIM0); similar to unknown [Populus trichocarpa] (GB:ABK93912.1); contains InterPro domain Nucleolar RNA-binding protein Nop10p (InterPro:IPR007264) Range:  from: 8838803    to: 8839997    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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