Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                        --------->ANAC46                <---------ANAC46            <-------MYC3                            <-------TEIL            ------->MYC3                           --------->GLK1(2)           --------->ANAC46                        --------->ARR14(1)           <---------O2                           <---------GLK1(2)           --------->O2                         ----------->ARR10           --------->TGA1a                     <---------------------WRI1           --------->ANAC55(2)             ------>NtERF2           <---------ANAC46               ------>NtERF2                     --------->At4g35610           <---------ANAC55(2)            --------->LBD16              --------->YAB1           <---------TGA1a              <---------LBD16             <---------At4g35610 -------ARR10----------->HVH21         ------>ZmHOX2a(1)       <---------GLK1(1)                   --   tctacgcttattcacgtgaagtagacgcgaacacttacatcctccggcctgagattcgttcaagggactccgatgatcagcatcgtcgaaactcaccctt  8743300                                                               --------->GLK1(1)                                                            --------->LBD16                                                           <---------ANAC55(2)                                                           --------->ANAC46                                                           --------->ANAC55(1)                                                           --------->ANAC58                --------->ANAC46                           --------->ANAC58           <-----------ARR10                              <---------LBD16   <---------ANAC58        ----------->GT1       --------->ANAC58   <---------ANAC58 --------->MYB52(1)           --------->ANAC46                       --------->TOE2(3)  <---------TOE1(2) ----------->RAV1(1)          --------->ANAC58 ----------->GT1    <---------GLK1(1) ------>ZmHOX2a(1) --------->AtMYB61      XXXXXXXXXXXXXXXXXXXX>MIR403               <---------ARR11(3) --------->RAV1(2)--------->MYB46(3)  --------->AHL20(2) --------->MYB52(1)         --------->ARR11(3)   ctcctgcgtttcaaatctaaaccaccagaaggaaacaaaattaaaacacacacacaaactcacggaaatcgaaatatatgttgtaagatacctgaatttg  8743400                                                                           <---------At4g35610                                                                           --------->At4g35610                                                                          --------->MYB52(2)                                                                      <---------ANAC58                                                                      <---------ANAC58                                                                   <----------DOF2                           <---------ARR14(2)                    <---------At4g35610              <------ZmHOX2a(2)                       <---------TOE1(3)  --------->SPL7            <------ZmHOX2a(1)             ------>ZmHOX2a(2)      --------->ZAT2            =====================================HOX2a_HOX2a     <---------ZAT2          <---------TOE1(2)--------->ARR14(2)         <---------TOE2(3) <---------MYB52(1)    --------->ZAT18<---------ZAT14      --------->ARR14(2)       --------->At4g35610  <---------ZAT18  --------->ZAT14      <---------ARR14(2)      ------>NtERF2   ctcgagcgctcgaaggatcagtaaacttgaatccgatttgtggatcggtcttatttagggtttcgccagctttcgttcgctgattccttcttctcatcac  8743500                                                                                  --------->ANAC58                                                                                  --------->ANAC58                                                                                  --------->ANAC46                                            <---------ICU4                        <---------ANAC55(2)                                            --------->YAB1                        --------->ANAC55(2)   --------->At4g35610        <------ZmHOX2a(2)--------->YAB1                  ----------->HVH21  <---------ARR14(2)    <---------ANAC46   <---------YAB1                     <-----------HVH21  --------->ARR14(2)  --------->GLK1(2)  --------->YAB1                      --------->ANAC46     ---  --------->GLK1(2)  <---------GLK1(2)----------->GT1                      <-----------GT1       <---   cgagtatctgaattcgttctacagaatcgtggatcaaacgctgttataatcacgaaggcgatgaagaatgagagatttcacatcacgcgtccatggcgat  8743600                                                    <---------ATHB12                                          <------NtERF2                                         ------>NtERF2                                         --------->RAP2.6(2)                                        <---------DEAR3(1)                                        <---------ATERF1(2)          --------->GLK1(2)     <---------AHL20(2)                                        <---------RAP2.6(2)         <---------GLK1(2)  <---------AHL20(2)                                        <---------ANAC46       <-----------GT1     <---------AHL20(2)                                        --------->ATERF1(2) <---------ICU4         --------->AHL20(2)     --------->GLK1(2)                 --------->RAP2.6(3)*TSS<---------YAB1       --------->YAB1---- ------>YAB1                           <---------LBD16 -------->P   --------->ARR14(2)--------->AHL20(1) ----TEIL                        ------->TEIL     --------->WOX13(1)<---------ARR14(2)<---------AHL20(1)   tcataagaatttgaaatcggagaagatgagaaatgaattttggcggcaaaatcaatcaacccttattacagattctttgctctaattatatatttcattt  8743700            --------->TGA2(2)                            <---------CCA1(2)           <-----------TGA1                          <-----------HVH21           <-----------HVH21                       ------->MYC2          --------->ANAC55(2)                      <-------MYC2          <---------ANAC55(2)                      ------->MYC3          --------->ANAC58                         ------->MYC4          --------->ANAC58                         <-------MYC3          --------->O2                             <-------MYC4          <---------TGA1a                          -------->ABF1          <---------O2                            <---------ANAC55(2)          <---------bZIP60(1)                     --------->TGA1a          --------->bZIP60(2)                     <---------O2          --------->bZIP60(1)                     --------->ANAC46          --------->TGA1a                         --------->O2                                 <-----          --------->ANAC46                        ================================================MYC_MYB         <-----------bZIP910(1)         --------->ANAC55(2)                                    ------         <-----------STF1               <---------ANAC55(2)                            <-----------GT1 <---------TOE1(3)             --------->ARR14(2) --------->ANAC55(2)     <-----------GT1 ------->GAMYB <---------TOE2(3)       <---------HSFB2a(2)      ============================================bZIP_DOF ------------------->TaNAC69(2)<---------ARR14(2) <---------TGA1a  ----------->GT1 <----------DOF2  >   tctaaggttgccacgtcatcacattatccagacgatactgatatgtgatcacacgtgtcatatcacaagtggtttaaaacgattccttttaaccccaaac  8743800                                                                              -------->P                                                                              --------->MYB52(1)                                                                            <---------MYB52(2)                                                                           --------->At4g35610                                                                           <---------At4g35610                                                                           --------->ZAT2                                                                        <---------ZAT2                                                                        --------->At4g35610                                                                        <---------At4g35610                                                                     --------->TGA2(2)                                                                   <---------O2                                                                   <---------TGA1a                                                                   --------->TGA2(1)                                                                   --------->O2<---------LBD16                                                                   ====================MYC_MYB                                                                   <---------bZIP60(1)                                                                   <---------ANAC55(2)                                                                   --------->bZIP60(1)                                                                   <---------TGA2(1)                                                                   --------->TGA1a                                                                  <-----------STF1                                               <------ZmHOX2a(2)  ----------->STF1                 <---------DAG2               <-----------HVH21  <---------TGA2(2) <---------ARR14(2)                <---------DAG2               ------->GAMYB      ----------->TGA1   --------->ARR14(2)       <----------DOF2   <------ZmHOX2a(2)   ================================MYC_MYB               --  ---------->DOF2<----------DOF2--------->ANAC58    --------->ANAC46<-----------TGA1              <-- ----ATHB12  <---------ALFIN1   --------->ANAC46    --------->ANAC58<<<<<<<<<<<AtbZIP1        ------- ------>CBF <---------ZAT18     --------->ANAC58    --------->ANAC58<-----------HVH21         ------- >>>>>>>>RAP2.2*TSS <---------LBD16         --------->MYB46(3)  ----------->HVH21--------->LBD16  <--   aatctaaagctttgtccaccttttcggatcactcacacaacttccaacgatcacacacaaatggcgatgacgtcagcagctaccggatttattctcacgg  8743900                         --------->ARR14(2)                       <---------MYB46(3)           <------NtERF2 <---------ARR14(2)         <---------DEAR3(1)         <---------ATERF1(2)         --------->ATERF1(2)        <------NtERF2  --------->MYB55(2)       <---------ATERF1(1)  --------------->AGL15       ------>NtERF2  --------->ALFIN1       --------->LBD16<---------AtMYB61     <---------LBD16  <---------DEAR3(1)                             --------->HSFC1(2)  <---------SPL7     <------NtERF2                     <---------ANAC58                            <-  <-----------HVH21  <-------GAMYB  --------->ZAT18    <---------ANAC58   <---------DEAR3(2)      <-- ------->MYB52(1)   <---------DEAR4(2)  <---------ALFIN1             <---------HSFB2a(1)          --- -------WRKY38(1)  <---------DREB2C(2)  --------->AtMYB61            <---------HSFC1(2)           <-- -->ANAC58------>NtERF2--------->ABI4(2)--------->DEAR3(1)           --------->HSFB2a(1)         <--- -->ANAC58--------->RAP2.6(2)  ---------->DOF2      <----------DOF2 ----------->ARR10           <---- -------WRKY12     <---------DEAR3(1)  --------->MYB46(3)    <---------At4g35610         <-----------HVH21   ccaacgtcccggcggcaataggcggtggttcttcaaagagcaccaccattgtgtctttcttgccgatgagaagcttcggttcaaggctagtagtcagagc  8744000                                                          --------->ZAT2                                                          <---------ZAT2                     ------->GAMYB                        --------->At4g35610      <---------TOE2(3)                     ===============MYC_MYB               <---------At4g35610  <------NtERF2                     --------->DEAR3(1)                --------->At4g35610     --------->At4g35610                     --------->RAP2.6(2)               <---------ZAT2          <---------At4g35610                    --------->DEAR3(2)                 <---------At4g35610 <---------SPL7                    --------->MYB46(3)              --------->At4g35610    ------>NtERF2        <---------ALFIN1                            <---------ZAT2         --------->LBD16       <-------TEIL <---------MYB55(2)              <---------At4g35610--------->ARR14(2)      --------->CCA1(2)    <-----------HVH21        --------->ZAT2   --------->HSFB2a(1)     <---------ARR11(3)   <---------O2           <---------At4g35610 <---------HSFC1(2)     --------->ARR14(2)   --------->O2           --------->At4g35610 <---------HSFB2a(1)     <---------ARR14(2)   --------->TGA1a       --------->DEAR3(1)   --------->HSFC1(2)     --------->ARR11(3)   <---------TGA1a     <XXXXXXXXXXXXXXXXXXXXMIR834 <---------RAP2.6(2) <------NtERF2      <------------AtMYB77     --------->DEAR3(1)    ---------->DOF2 <---------TOE1(3) --------ANAC46------>NtERF2                 --------->AtMYB61 --------->LBD16--------->RAP2.6(2) -------LBD16<---------LBD16                 <---------ALFIN1<---------LBD16 --------->SPL7 ------>At4g35610   ================MYC_MYB <---------MYB55(2) ------>NtERF2------>NtERF2       ----- ----NtERF2--------->AtMYB61        --------->ARR11(3)<-----------RAV1(1)<---------LBD16        ===== ------RAP2.3(1)   <---------ATERF1(1)      --------->MYB46(3)<---------DEAR3(1)<----------CDC5 ===== -----DEAR3(1) --------->LBD16  <---------MYB52(1) <-----------RAV1(1) <---------ARR14(2)      <-----   ggcggaagatacacctccggcaaccgcctcgtcggatagttcttccaccaccgctgctgctgctccggcgaaagttccggccgctaaggctaaacctcct  8744100                            --------->ICU4                      --------->ANAC46                      <---------TOE1(2)                   ------>ZmHOX2a(2)                  <------ZmHOX2a(2)                 --------->ARR14(2)        ---------->DOF2   <-------TEIL              ------->TEIL xxxxxxxxxxxxxxxx>smallRNA(si3)             <----------DOF2 ->ZmHOX2a(1)   <------ZmHOX2a(1)        --------->GLK1(2) =========================HOX2a_HOX2a    <---------ARR11(3)                         <---------YAB1 ========================HOX2a_HOX2a --------->ANAC55(2)                           <---------TOE2(3) ------------AGL1<---------ARR14(2)  --------->YAB1<---------AtLEC2               --------->YAB1   ccaattggcccaaagagaggatccaaggtacttattcatacataatctttgatgcatgtttatacttcaaaattttgagtttattgatgatagccaagtt  8744200  Previous    Next  AGI:  At2g20250.1    Description:  unknown protein Range:  from: 8740831    to: 8743658    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g20260.1    Description:  PSAE-2 (photosystem I subunit E-2); catalytic. Identical to Photosystem I reaction center subunit IV B, chloroplast precursor (PSAE2) [Arabidopsis Thaliana] (GB:Q9S714); similar to PSAE-1 (PSA E1 KNOCKOUT), catalytic [Arabidopsis thaliana] (TAIR:AT4G28750.1); similar to PSI reaction center subunit III [Citrus sinensis] (GB:BAF80474.1); contains InterPro domain Electron transport accessory protein; (InterPro:IPR008990); contains InterPro domain Photosystem I reaction centre subunit IV/PsaE; (InterPro:IPR003375) Range:  from: 8743815    to: 8744848    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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