Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->AtMYB61                                                         ------->GAMYB    --------->At4g35610                                                        --------->MYB46(3)<---------ZAT2                                                       --------->ANAC58   <---------At4g35610                                                       --------->ANAC58   --------->ZAT2           <----------DOF2                          ------->GAMYB       <-----------RAV1(2)          <---------HSFB2a(1)                      --------->ANAC58    <---------At4g35610         --------->At4g35610                       --------->ANAC46 <---------At4g35610       <------ZmHOX2a(1)                           --------->ANAC58 --------->LBD16 ---->ANAC58              ---------->DOF2     --------->YAB1<-----------ARR10--------->At4g35610 ---->ANAC46       --------->AtLEC2           --------->ANAC58      --------->At4g35610         <---- ---->ANAC58   <-----------TGA1               --------->ANAC58     --------->ANAC46 --------->ZAT2   gcaagagaaggagctttcgtcatccaaacaaagagaagagagtgccaatcgcaacgcaaccaaaacttcccgctgcagctgctctcggctcgctgtttct  8732200                                                                              -------->HAHB4                                                                              <---------ICU4                                                                              <---------AHL20(2)                                                      <------NtERF2          <---------YAB1                                                      <---------At4g35610    --------->ICU4                     <---------ATHB12                 --------->At4g35610  <---------ICU4      <-----                     <---------AHL20(2)             <---------RAP2.6(2)    <--------HAHB4      ------        *TSS         --------->AHL20(2)      --------->ICU4               --------->ICU4     <-------    ---------->DOF2  <---------ATHB51      --------->YAB1                 <---------YAB1    ---------  ----------------->AGL1    <---------MYB52(1)<---------ICU4            --------->YAB1      <-------- ------DOF2    ----------->GT1          <----------DOF2           ------------>CBF--------->YAB1  <--   ttcttccaaagagggaagagcaaataattcgttatgaggtctctttcataatgggccgcttagtatggcccaattcataattattcatagataattaaat  8732300                                                                                <---------AHL20(2)                                                                              <---------YAB1                                                                             --------->AHL20(1)                                                                            --------->AHL20(2)         ----------->GT1                                                    XXXXXXXXXXXXXXXXXXXX>MIR830    ----------->HVH21                                                      <---------AHL20(1) ----ARR11(3)                                                              <---------AHL20(2) --->ARR11(3)                                                              --------->AHL20(2) --AHL20(2)              <---------TOE2(3)                           ----------->GT1 >AHL20(2)              ---------->DOF2                              <---------ZAT6              ---- -AHL20(2)             --------->YAB1 <----------DOF2              ----------->GT1  ---------->DOF2 --------DOF2          --------->AHL20(2)                     <---------YAB1<---------AHL20(2)  -----   ctttttgtgaccagtaaaaaaacaattaaagttttaaaaactttgtttaaaaaaacatattttcatgagtagtgtaaattattttaaaaagaaatggaat  8732400                         <---------AHL20(2)                        <---------AHL20(2)                        --------->AHL20(2)                     <---------ICU4                     <--------ATHB1                     --------->ATHB51                     --------->YAB1                     --------->AHL20(2)         --------->AHL20(2)                                                                       ---         <---------AHL20(2) <---------YAB1                                                       ----   <------ZmHOX2a(1) <---------AHL20(1)                                                      <-------  ----------->GT1   <---------ATHB12                   <---------AHL20(2)                   --------- <---------TOE2(3)  <---------ATHB51               --------->AHL20(2)                       <-------- ----->YAB1         --------->ICU4    --------->AHL20(2)                                  --------->YAB1 ---->ICU4        --------->YAB1      <---------AHL20(2)                            --------->AtLEC2   tataaggaaattttaatcaacaataattttataatggaatttaaatgttttttttatataaaaaaaaactaattgtgagcattgccatccaaaaataaat  8732500                                                   --------->AHL20(2)                     <---------AHL20(2)     <---------AHL20(2)                          --------->TOE2(3)                       <---------AHL20(1)     --------->AHL20(2)                         <---------ICU4                           <---------AHL20(2)    <---------AHL20(2)                          --------->ATHB12                         --------->AHL20(2)    <---------AHL20(1)                          --------->YAB1                   --------->ZAT14    --------->AHL20(1)                         <---------ATHB12                  <---------ZAT18    --------->AHL20(2)                     --------->AHL20(2)                    --------->ZAT18 ------>At5g28300                          <---------AHL20(2)  ------>NtERF2     <---------ZAT14 ------->GT1                          <------ZmHOX2a(2)   <-------MYC3         --------------->AtSPL8 --AHL20(2)                          <---------ARR11(3)   <-------MYC2         <---------------AtSPL8 >AHL20(2)     <---------AHL20(2)    --------->ARR11(3)   ------->MYC3       <---------ICU4 -AHL20(2)     --------->AHL20(2)   <------ZmHOX2a(1)     ------->MYC2 --------->YAB1    --------->AHL20(1)   ggtaaatttatttgtaattaaaaatagaagaaatatcaggatcatataaatcattaaacacatgcagccaaaaacataataagtgtacaaataaaatttt  8732600                                                                                             <-------                      *TSS                                           --------->ANAC46     <---------AHL20(1)                     --------->CCA1(2)                             ---------->DOF2        --------->AHL20(1)           --------->DAG2                                        ------>ZmHOX2a(1)----------->GT1          ---------->DOF2                                 <---------ICU4          --------->LBD16       <---------HSFB2a(2)                                --------->YAB1       --------->MYB52(1)       --------->HSFB2a(2)           <-----------GT1     <---------ATHB51  ------>NtERF2  --------->AHL20(2)   aaaacagttccaaaaagcatcagataagagcgaaacaaattacaaaattgaattacacaataatgtcctctaagcgacgactaccggtgaaatattttat  8732700                         ---------->DOF2   --------->ARR14(1)                    --------->MYB46(3)    --------->ARR11(1)                 XXXXXXXXXXXXXXXXXXXX>MIR851-3P              --------->YAB1              <---------GLK1(2)              <--------ATHB1         <----------DOF2              --------->ATHB51    ------>NtERF2              <--------HAHB4     <---------ALFIN1              <---------ICU4    <------NtERF2             <---------ATHB51   --------->ATERF1(1)                            <---------GLK1(2)             <---------ATHB12  <---------ATERF1(1)                     <---------GLK1(2)             --------->ICU4   ----------->HVH21                     --------->DAG2            ------- --AHL20(2)  --------->AHL20(2)------>NtERF2<-------TEIL           ---------->DOF2      ------>ZmHOX2a(1)   aagaaaacaaaaacaataattaacaaacaaaggcgacacctttagattcgacaagacgaccattttagaaaaagcttctcaaattctctccttatcccca  8732800                                                    --------->At4g35610                                                  <---------WOX13(1)                    ------>ZmHOX2a(1)                                                <---------ARR14(2)                     --------->TOE2(3)                                                --------->ARR14(2)                     --------->TOE1(3)                                             <---------ANAC46                         ------>ZmHOX2a(2)                                            ------>NtERF2                            <------ZmHOX2a(2)                          --------->GLK1(2) <------NtERF2                           --------->ARR14(3)                        <---------HSFB2a(1)--------->LBD16                          <---------ARR14(3)                        --------->HSFC1(2)<---------RAP2.6(2)                       --------->ARR11(3)                 <----------DOF2          <---------RAP2.3(2)                       <---------GLK1(2)             ---------->ID1              <---------LBD16                            --------->ARR14(2)        <---------DAG2  --------->HSFB2a(1)<---------RAP2.3(1)                      <---------ARR11(3)        <----------DOF2 <---------HSFC1(2)<---------DEAR3(1)                        <---------ARR14(2) -->LBD16   <-----------GT1           ---------->DOF2  ------>NtERF2         ------->GAMYB   aaaattcaaacttttttctctttggaaaattctgaggcaaaaatgcggcgtaattgctgccatgtttcatttgcttcaaccctcaagatccttaattttg  8732900                                                                           --------->PCF2                                                                           --------->TCP20                                                                           <---------PCF2                                                                           --------->TCP16(1)                                                                           --------->PCF5                                                                           --------->TCP11(2)                                                                           <---------ARR14(2)                                                                         --------->WRKY38(1)                                                                         --------->WRKY12<---------At4g35610                                                                        --------->ALFIN1 --------->At4g35610                                                                       --------->LBD16   <---------ZAT2                                                                      <---------ANAC46   --------->ZAT2                                                                   ------>MYB46(1)    <---------MYB52(1)                                                                   -------->P        <-----------TGA1                                                                   ------>MYB83   <---------ATERF1(1)                                                                <---------At4g35610  <-----------HVH21                                                                --------->At4g35610 --------->ANAC46                                                              <---------ALFIN1    ------>NtERF2                                                             <---------MYB52(1)  --------->DEAR3(1)                                                             <------NtERF2<---------TCP16(2)                                                            <-----------HVH21 --------->ANAC58                                --------------->AGL15       <---------ATERF1(1)------>NtERF2<-------TEIL                                <---------------AGL15       <---------RAP2.6(3)<---------ATERF1(1)                               --------->ANAC46             <-----------TGA1 --------->MYB46(3)                      --------->YAB1                       --------->RAP2.3(3)<---------ALFIN1                      <---------ICU4                       --------->DEAR3(1)--------->ATERF1(1)                      <--------HAHB4                       --------->RAP2.3(2)--------->ANAC46       --------->ATHB12   <---------ARR11(3)               --------->RAP2.6(2)--------->ANAC58     <-      <---------YAB1 <---------ATHB12                      --------->ANAC46--------->ARR14(2)--------    <----------DOF2  <------ZmHOX2a(2)                   <---------At4g35610<---------ATERF1(1)    --   tccaagctttcattggtgtttcgatcattatctactccatatggatgctccatgaatacagccgtcaccttcccgtggacccgcctccgtcagcttcatc  8733000      --------->ARR14(2)      <---------ARR14(2)    --------->LBD16        --------->ARR14(2)                                                 -------   --------->ANAC46        <-----------ARR10                                                  <------   <---------HSFB2a(2)     <---------ARR14(2)                             <---------LBD16    --------   --------->HSFB2a(2)     ------->TEIL                       <---------ANAC58               <-------  <---------LBD16         <---------CCA1(2)              <-----------RAV1(1)                --------- --------ZAT2  ------>ZmHOX2a(2)                ------>ZmHOX2a(1)   <---------YAB1      <---------MYB46(3) ->REM1(1)    <------ZmHOX2a(2)             --------->GLK1(2) <---------ANAC58         --------->ALFIN1 ------->ZAT2<---------ARR11(3)             <---------ARR14(2)<---------ANAC46      <-----------RAV1(1)   aagctccggaaccgagatcgctactagtgtatctgagcccttgaagaatcctattgattttgtggcgagtatcattctcgggtctaatggtggtgatcat  8733100  Previous    Next  AGI:  At2g20210.1    Description:  leucine-rich repeat family protein. similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96837.1); contains InterPro domain Leucine-rich repeat, ribonuclease inhibitor subtype (InterPro:IPR003590); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) Range:  from: 8728518    to: 8732208    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g20230.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28770.1); similar to unknown [Populus trichocarpa] (GB:ABK93408.1); similar to unknown [Populus trichocarpa] (GB:ABK93560.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) Range:  from: 8732622    to: 8734823    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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