Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                   ----------->GT1                                         --------->HSFB2a(2)                     <---------ANAC58                                                    <---------HSFB2a(2)              <---------YAB1    ----------->GT1     <---------GLK1(2)                 --------->GLK1(2)  --------->ATHB12   <---------ANAC58           --------->TOE1(2)                 <-----------GT1 -------->HSFB2a(2)  <---------ANAC46    --------->TOE1(3)                        --------->YAB1 ------DOF2 --------->YAB1---------->DOF2--------->TOE2(3)                 ----------->GT1   ttctcgattggccataacaattgtcgtgtaaagagagataaaaccctaaacctagaaactcaccgagagttcgaagattgtaaatcacaatctagaagct  8699400                              ------>ZmHOX2a(1)                              --------->LBD16                             --------->TOE1(2)                            ------>ZmHOX2a(2)                           <------ZmHOX2a(2)                          --------->ARR11(3)                          <---------ARR14(2)                          <---------ARR11(3)                          --------->ARR14(2)                          <---------ARR14(3)                          --------->ARR14(3)   --------->ATHB12                         --------->HSFB2a(1)  --------->ICU4                         --------->GLK1(1)    <---------YAB1     ----------->HVH21                        ----------->ARR10   --------->YAB1      <---------WOX13(1)                --------->AtMYB61          --------->ICU4    <---------YAB1                <---------ALFIN1           <---------YAB1 <---------YAB1               --------->MYB46(3)        --------->YAB1   --------->ICU4             --------->ARR14(2)    --------->CCA1(2)    --------->YAB1             <---------ARR14(2) ----------->ARR10   <---------YAB1  <---------ANAC58  <---------HSFB2a(2) <---------YAB1 <---------YAB1  <---------ANAC58  --------->HSFB2a(2) --------->ICU4 --------->ICU4                            <---   agttgcgaaacagaagaaccacctcgaagatcctgagatttgatgatgatgattgtgatgatgatgaatgacagatagagaagacgatgaaattgatttt  8699500                                                                      ------>MYB46(1)                                                                     --------->MYB52(1)                                                               --------->AtMYB61                                                               <---------MYB46(2)                                                               <---------MYB59                                                            ------->GAMYB                                                           <---------MYB46(2)                                                           <---------MYB111(2)                                                           <---------MYB55(2)                                                           <---------MYB52(2)                                                           <---------MYB111(1)                                                           --------->MYB46(3)                                                          ------>MYB83------>MYB83                                                          ------>MYB46(1)                                                  --------------->AtSPL8                                                 <---------At5g28300--------->TOE1(2)                                               ----------->HVH21 ------>MYB83          --------->LBD16 --------->DAG2       --------->WRKY38(1) <---------MYB55(2)         --------------->AGL15                 --------->WRKY12--------->MYB46(3)         <---------------AGL15                <---------WOX13(1) ------>MYB46(1)        <-----------------AGL2      ----------->RAV1(2) <---------MYB111(1)        ----------------->AG        <---------ANAC46<---------SPL7 <---------MYB52(2)        <-----------------AG     ------>ZmHOX2a(1)--------------->AtSPL3        <----------DOF2        ----------------->AGL1   <XXXXXXXXXXXXXXXXXXXXMIR168A/B<---------MYB111(1)        ----------------->AGL2  <---------ANAC58<-----------GT1<---------MYB111(2)        <-----------------AGL1  <---------ANAC58<---------WRKY18(1)--------->MYB46(3) *TSS<---------GLK1(1)   ---------->DOF2 ------->TEIL --------->SPL7--------->TOE2(2)        -------- ------YAB1         ---------->DOF2-------->P<------------CBF-------->P   <------------CBF--------->TOE2(3)   tgattcgatttccccaaatggcaaaagaaaagttccttacctgtaccgattgaccgtaccaactaccaaaccaacgaattgacttttacaaaacttaaac  8699600             <---------AHL20(2)             --------->AHL20(2)         <---------YAB1        --------->ARR11(3)       --------->YAB1                                                               ---------->DOF2     <---------TOE2(3)                                                           <---------ANAC55(2)    ---------->DOF2                              <---------AtMYB61   --------->AHL20(2)   --------->AHL20(2)                            <---------TOE2(3)   <---------AHL20(2)   <---------AHL20(2)  --------->ATHB12       <---------ANAC58      <---------AHL20(2)   --------->ZAT18 -->DOF2<---------ARR11(3)                    <---------ANAC58      --------->AHL20(2) --------->PCF2   cgaaattaaagataattaaaccgagttattgaactaaaccagataatagcttaggttgaatcagttttaaaaaaatttgcgatacctaaggcccactaag  8699700                                          --------->YAB1                                          <---------ICU4                                      -------                                 <---------ALFIN1                                             -------                                <---------ZAT18                                  *TSS    <---------MYB52(2)            ---------->DOF2     --------->ZAT18  ------>ZmHOX2a(1)   <---------ARR11(3) --------->ANAC58        --------->TOE2(3)--------->YAB1--------->YAB1                --------->ARR11(3) --------->ANAC58       ----------->GT1 --------->AHL20(2)<---------ATHB12 --------->YAB1         --------->LBD16  <-----------GT1     --------->YAB1<----------DOF2   <---------MYB52(1)         --------->HSFB2a(2)   tttttcacatcgtaaaaaggcctaaaataataagcccactttaatcatctcctcccgttatcagattaaaagatttgtttctccgagagcaagaaacctc  8699800                                 <---------ANAC46                                <---------LBD16                               --------->LBD16                               ------>NtERF2                             <---------LBD16                             --------->SPL7                            ------>MYB46(1)                            ------>MYB83                            --------->MYB52(1)                         --------->HSFC1(2)                         --------->HSFB2a(1)                         <---------HSFC1(2)                         <---------HSFB2a(1)                        --------->ARR11(3)                        <---------AtMYB61                        <---------ARR11(3)             ==================================HOX2a_HOX2a                       <------ZmHOX2a(1)               ------>ZmHOX2a(2)                     --------->ANAC58                 ===================================HOX2a_HOX2a-                     --------->ANAC58                 <------ZmHOX2a(2)                             -  --------->CCA1(2)<---------WRKY12                  <---------ARR14(2)                             - <----------ID1    <---------WRKY38(1)               --------->ARR14(2)                             - -->TOE2(3)       --------->WRKY18(1)               <---------GLK1(1)             <------ZmHOX2a(1)-- -->TOE1(3)      <-----------HVH21 <------NtERF2    --------->GLK1(1)<---------ANAC46            ----   agagagacgaagcacaatgggtcaaggaccttccggcggattgaatcggcaaggagatcggaaaccagatggtggagagaagaaggagaagaagttcgaa  8699900                                                            <------NtERF2                                                            --------->ATERF1(1)                                                           <---------RAP2.3(1)                                                           <---------ERF1                                                           <---------DEAR4(2)                                                           ------>NtERF2                                                           <---------ATERF1(1)                                                          <---------RAP2.3(2)                                                          <---------DEAR3(1)                                                          <---------ANAC46                                                          --------->DEAR3(1)          <-------PIF5                                    <---------ATERF1(2)          ------->PIF5                                    <---------RAP2.3(3)         ----------->RAV1(2)                              --------->ATERF1(2)       --------->AtMYB61                                 --------->ATERF1(1)       --------->DEAR3(1)                               <---------ATERF1(1)       <---------ALFIN1                                 <---------DEAR4(2)      --------->MYB46(3)                                <---------RAP2.3(1)     --------->SPL7                                    <---------RAP2.3(2)    <---------ALFIN1                  <---------At4g35610--------->RAP2.3(1)  --------->RAP2.3(2)             ------->GAMYB        <---------DEAR3(1)             <--------------  --------->DEAR3(1)             --------->ANAC58     <---------At4g35610          ------>ZmHOX2a(1)  --------->RAP2.6(2)            --------->ANAC58  ---------->DOF2           <---------ATERF1(1) -------->At4g35610            --------->MYB52(1) ----------->HVH21      <---------DEAR3(1)       <-- ----->MYB83                --------->ANAC58    ----------->RAV1(2)     <------NtERF2 =============== -------->ZAT2              --------->ANAC58    --------->At4g35610    ------>NtERF2  --------------- ----->MYB46(1)           <------ZmHOX2a(1)   <------ZmHOX2a(1)       ----------->HVH21           --- ------->ANAC46   --------->REM1(2)   --------->At4g35610<------NtERF2--------->DEAR3(1)          <-- ----->MYB46(3)<------------------SPL14   ---------->DOF2<---------ABI4(1) --------->At5g28300    ---   ccagccgcaccacctgctcgtgtagggaggaagcaacggaagcagaaaggacctgaagcggcggcgagattgccgacggtgactccttctactaaatgta  8700000                                                                                               <-----                                                                                               ------                                                                                               ------        <-----------------AGL2                                                                 <----- -AGL15 <-----------------AGL3                                                              --------- -------HSFC1(2)                      <---------ANAC58              <------ZmHOX2a(1) =============== =========================MADS_MADS   <---------ANAC58           <-----------RAV1(2)  =============== >AGL15--------->At4g35610            <---------ANAC46         --------->GLK1(2)      <------ZmHOX2a(1) ------>HSFC1(2)             <------ZmHOX2a(1)                 <---------ARR14(2)  <---------LBD16 -------At4g35610       <---------ATHB12                       --------->ARR14(2)  <-----------RAV1(2) ------>At4g35610      --------->GLK1(2)       <------ZmHOX2a(1) --------->YAB1  --------->TOE2(3) <-   agcttcgattgctgaaattggagcgaatcaaggactatttgcttatggaggaagagttcgtagcgaatcaggagagattgaaacctcaggaagagaaagc  8700100             ---------->DOF2           ------>ZmHOX2a(2)          <------ZmHOX2a(2)         <---------AGP1 ===============================HOX2a_HOX2a ================HOX2a_HOX2a =================HOX2a_HOX2a <------ZmHOX2a(1)       ------>ZmHOX2a(2) ----At4g35610         <-----------ARR10                                                 <----------- --->At4g35610<---------TOE2(3)                                                   >>>>>>>>>>>>>>>>>LFY --->ZAT2<---------ARR11(3)                                                      <---------ANAC55(2) ----ZAT2--------->ARR11(3)                  <---------ZAT6                      --------->ANAC55(2)< ->DOF2  --------->AGP1<---------ARR11(3)    --------->ALFIN1 <---------ARR11(3) --------->ANAC46   < =================HOX2a_HOX2a      --------->REM1(1)          --------->ARR11(3) --------->ANAC58  <- ================HOX2a_HOX2a  --------------->AtSPL8--------->WOX13(1)           --------->ANAC58  <- --------TOE2(3)       --------->ARR11(3)<---------YAB1--------->YAB1        --------->GLK1(2)<<<<<<<   tgaggaagatagatctaaagttgatgatcttcgtggtacacctatgagtgttggcaatcttgaagagcttattgatgagaatcacgccattgtttcttct  8700200   <------MYB83   <------MYB46(1)  <---------MYB46(3)  <---------AtMYB61 <---------MYB52(1)                                      ----------->RAV1(2) <---------MYB55(1)                               --------->ZAT2 <--------P                                   <---------ARR14(2) -------------ANAC81                          --------->ARR14(2)  <----------DOF2 ---------MYB52(1)                           <------ZmHOX2a(1)  --------->At4g35610 -------GAMYB                              <---------TOE2(3)  <---------RAP2.3(3) --------MYB46(3)                   <-------GAMYB --------->At4g35610                             <-- --------DEAR3(2)                  <---------ANAC46     ------->TEIL                   <---------ARR11(3) <<TBF1 ------>ZmHOX2a(1)       <----------DOF2<------ZmHOX2a(2)<---------At4g35610    --------->ARR11(3)   tcggttggtcctgagtactacgttggcattttgtctttcgttgataaggatcagcttgaacctggctgctctattttgatgcataacaaggtattgagtt  8700300  Previous    Next  AGI:  At2g20130.1    Description:  LCV1 (LIKE COV 1). similar to COV1 (CONTINUOUS VASCULAR RING) [Arabidopsis thaliana] (TAIR:AT2G20120.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65512.1); contains InterPro domain Protein of unknown function DUF502 (InterPro:IPR007462) Range:  from: 8697449    to: 8699501    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g20140.1    Description:  26S protease regulatory complex subunit 4, putative. similar to RPT2A (REGULATORY PARTICLE AAA-ATPASE 2A), ATPase [Arabidopsis thaliana] (TAIR:AT4G29040.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN78907.1); similar to AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula] (GB:ABD32889.1); similar to 26S proteasome subunit 4-like protein [Brassica napus] (GB:CAC14432.1); contains InterPro domain AAA ATPase, conserved site; (InterPro:IPR003960); contains InterPro domain AAA+ ATPase, core; (InterPro:IPR003593); contains InterPro domain AAA ATPase, core; (InterPro:IPR003959); contains InterPro domain 26S proteasome subunit P Range:  from: 8699781    to: 8702165    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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