Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                      <---------AHL20(2)       ------>MYB83                                                              --------->AHL20(1)       ------>MYB46(1)                                                           <---------AHL20(1)     <---------MYB111(2)                                                         --------->AHL20(2)     <---------MYB46(2)                                                          <---------AHL20(2)     <---------MYB55(2)                                                        <---------TOE2(3)   --     <---------MYB111(1)                                                      --------->YAB1      ---     --------->MYB46(3)                                                       --------->AHL20(2)  ---     --------->AtMYB61                                                      <---------YAB1        <--    --------->ANAC46                                                       --------->TOE2(3)      --- --------->MYB46(3)                                                       --------->YAB1          --- ------ZmHOX2a(2)                         <---------ANAC55(2)             <---------ICU4          <-- --------ARR14(2)                 ------->GAMYB                          <---------ATHB12         <-- ------->ARR14(2)                <------------AtMYB77       <----------ID1--------->ATHB12       ---- -->MYB52(1)                   --------->MYB52(1)    ----------->GT1     --------->ICU4    ---------- ->SPL14 --------->YAB1   --------->AHL20(2)     --------->TOE1(2)   --------->AHL20(2) --------->ZAT6   cgatccaccaaacaaaattgaaacacaaaaaaataactgccaatacataaatgtgcgataaaaaaacaaaaaaaaatcattaatattttaacacaaagtt  8651100     --------->AHL20(2) ------->TOE2(3) ------>ANAC58                                                                       <---------ARR11(3) ------>bZIP60(1)                          <---------YAB1                            --------->ARR11(3) -------ANAC55(2)                         <---------AHL20(2)                     <---------ICU4 ------>ANAC55(2)                         --------->AHL20(2)                    --------->ICU4 ------>ANAC58                           --------->YAB1                ----------->GT1 -------bZIP60(1)                       <---------YAB1                 --------->ANAC58 -------ANAC46                     --------->TOE2(3) --------->At4g35610       --------->ANAC55(2) ----->MYB59          <---------ICU4 --------->AHL20(2)                --------->ANAC58 >DOF2   --------->ANAC46     <---------MYB52(2)     <---------At4g35610       <---------ANAC55(2)   acgtcaaataaacacaattgttcataagtgcaaataacatttattaaaattgtttagctaagaaagtttgggctcgtaaatacttattatcttatgtata  8651200                                                     <---------AHL20(2)                                                     --------->AHL20(2)                                                   <---------------AGL15                                                   --------------->AGL15             <---------ATHB12                  --------->AHL20(2)             --------->ICU4             <---------At4g35610                                      ----       ---------->ID1      --------->AHL20(2)  <---------AHL20(2)                     ---------->DOF2  ------->TEIL         <---------AHL20(2)     --------->YAB1                       ----------->GT1 --   aacgaatttgttctaatgactatatataaaaaaatcaatttcagataattttaatataaatagtattgccaaaaaaaaaaaaaaactgtaaagtttctca  8651300               --------->At4g35610               <---------At4g35610              --------->ANAC46                                   -------->HAHB4        <-----------GT1                                          <---------ICU4    --------->AHL20(1)                                           --------->YAB1    <---------ARR11(3)                                          <---------ATHB12    <---------AHL20(1)                                     <---------At4g35610    --------->ARR11(3)                                     <---------ZAT2   <---------AHL20(2)                                      --------->At4g35610                      -  --------->ICU4                        <---------YAB1 <-----------HVH21                          --- ------->GT1------>ZmHOX2a(1)   <-----------GT1 <---------SPL7  <---------ATHB51                <---- ------->AHL20(2)           <----------DOF2<---------WOX13(1)   --------->ICU4           <----------DOF2   tgtaaatatttttcctccgctaccaatgggctttaaaccaggctgattgtcttacgaagtcagctaataatggggtttgaaaacaaatgggctttaaaac  8651400                                                                                 ------>MYB46(1)                                                                            <-----------GT1                                                                         --------->ANAC58                                                                         --------->bZIP60(2)                                                                    --------->ANAC46                                                                   *TSS  --------->ANAC58          ----------->HVH21                                       --------->AtMYB61     <----------DOF2                                              <---------ALFIN1<------------AtMYB77 -------->ALFIN1                                                ------>ZmHOX2a(1)------>MYB83 ------>ZAT2                               ---------->ID1    ------>ZmHOX2a(1) --------->MYB46(3) -------RAV1(2)     <---------YAB1      <-------TEIL  ------------>CBF   --------->ANAC46   aggtgggcttatgcgacccattatgtttgtttttctcacaaattcgtccccatagtttcaatcctcctccacaccaagtcaccaactgtggatgagtctc  8651500                                                                                 <---------ALFIN1                                                                                <------NtERF2                                                                              --------->ANAC58    <--                                             <---------ANAC46                 --------->ANAC46    ---                                             ----------->GT1                 <---------LBD16     <---                                     --------->LBD16            <----------DOF2------>NtERF2     <---                                     ------>NtERF2              <---------DAG2--------->ANAC58------>ZmHOX2a(1)          <---------ANAC58          <---------ETT(1)      --------->ZAT6    <---------ANAC58  =======          <---------ANAC58          --------->ANAC46      <---------ALFIN1  <---------ANAC58  =======     --------->TOE2(3)             <---------LBD16       --------->ZAT14  <-----------GT1    <-------   tctaaaaccttggcttccttcgacttcttctgttttctccggcaatgtcgttaaaactcaacactccttttccaattttcgcgccatctctatttcctaa  8651600                            --------->GLK1(2)                                 --------->ATERF1(1)                           <---------ARR14(2)                                 <------NtERF2                        ------>ZmHOX2a(2)                                    --------->LBD16                       --------->ARR14(1)                                    <---------ATERF1(1)                       <------ZmHOX2a(2)                                    --------->DEAR3(1)                       --------->CCA1(2)                                   <------NtERF2                      <---------ARR14(2)                                   <---------LBD16                      --------->AGP1                                       --------->ATERF1(1)                      <---------ARR11(3)                                  ------>NtERF2                     <---------GLK1(1)                                   --------->DEAR3(1)                     --------->GLK1(1)                                   <---------DEAR3(1)                    ----------->ARR10                                   --------->ATERF1(1)          --------->ZAT18  <---------GLK1(2)                           <-----------HVH21       ---------->DOF2--------->ARR14(2)         ---------->DOF2      --------->DEAR3(1) -------ICU4  --------->MYB46(3)             --------->ANAC58     --------->ZAT2 ------>YAB1  <---------MYB55(2)     --------->ALFIN1    --------->SPL7<---------ATERF1(1) ------YAB1  --------->ANAC58    --------------->AGL15  --------->MYB52(1)<---------ATERF1(1) ------ATHB12--------->ANAC58    <---------HSFB2a(2)   <---------SPL7--------->At4g35610 =============================HOX2a_HOX2a <---------WRKY12        <---------ZAT2------>NtERF2 ==============================HOX2a_HOX2a<---------WRKY38(1)   <---------HSFB2a(2)      <---------ARR11(3) --MYB59  <---------ZAT18  --------->ARR14(2)--------->ANAC58   --------->HSFB2a(2)      --------->ARR11(3)   tcataacccaagagcacccagcgagatccgattctctagatggggcaacgctaatgccgaacggttcgagcagcgtcgccggagccaagaagaactcgag  8651700               --------->DEAR3(1)              --------->MYB46(3)              --------->DEAR3(2)              --------->ATERF1(1)              <---------ABI4(2)             --------->SPL7             <---------ATERF1(1)            <---------PCF5           <------NtERF2           ----------->HVH21  <---------At4g35610                        <----------CDC5          --------->HSFB2a(2) ------>NtERF2                             ----------------------->TaNAC69(2)          <---------DEAR3(2) --------->RAP2.6(2)                        --------->ZAT2        <---------MYB52(1)   --------->DEAR3(1)                         <---------ZAT2       <-----------HVH21    <------NtERF2                               --------->At4g35610     <-------TEIL           --------->RAP2.3(1)                         ----------->RAV1(2)        <-     ------>ZmHOX2a(2)     <---------RAP2.3(1)                          <---------At4g35610        ==    <------ZmHOX2a(2)      ------>NtERF2                             --------->At4g35610          ---   <---------ARR11(3)      <---------ATERF1(1)                    <---------At4g35610 <-----------HVH21   --------->AGP1         <---------DEAR3(1)                      --------->At4g35610--------->ANAC58   --------->ARR14(2)     --------->DEAR3(1)                   --------->At4g35610   --------->ANAC58   --------->ARR11(3)     --------->ANAC46                  --------->LBD16          --------->ANAC46   <---------ARR14(2)  ----------->HVH21              <---------ICU4 <---------At4g35610     <-------  <---------GLK1(1) --------->ARR14(2)               --------->ICU4  <---------ZAT2  --------->bZIP60(2)  --------->GLK1(1) <---------ARR14(2)               <---------ATHB12--------->ZAT2 <-----------STF1 ----------->ARR10--------->DEAR3(1)                 <---------YAB1<-----------RAV1(2)<-----------TGA1   gctgagatccgtcgggaccgccgattcgacgccgctactaaaatcgtccatacccatgattccgaagcagcagctgctgagcctaaaacgtcaccgttta  8651800                                                  --------->CCA1(2)                                                  ================================HOX2a_HOX2a                                                  <------ZmHOX2a(2)                                                 --------->ARR11(3)                                                 --------->ARR14(2)                                                 <---------ARR11(3)                                                --------->GLK1(1)                                          <-----------HVH21                                       <---------ANAC58             <-----------HVH21         <---------ANAC58         --------->ANAC58              <---------ANAC46         --------->ANAC58             <---------LBD16                        --------->ANAC58 -----ZmHOX2a(2)                    <---------ARR14(2)               <---------ARR14(2) ===================HOX2a_HOX2a     --------->ARR14(2) <---------ARR14(2)    --------->ANAC58 ------>ARR11(3)          <---------ZAT2--------->LBD16--------->ARR14(2)  <------ZmHOX2a(1) --MYB52(1)  ------>ZmHOX2a(1)  <---------TOE1(2)<---------ARR14(2)  --------->ARR14(2)       -------   gatcaagaggcactccttcacttccctctgctcgttcgattccgggtcgaagatccaaatactccaaacccgattcaggacccaatagacccaagaacaa  8651900                     ------>NtERF2                     <------NtERF2                     --------->LBD16                    --------->RAP2.3(2)                    --------->RAP2.3(3)                    --------->ANAC46                    --------->RAP2.6(2)                    --------->RRTF1(3)                    --------->ANAC58                    --------->ANAC58                    --------->DEAR3(1)                    --------->RRTF1(2)                   <------NtERF2                   --------->RRTF1(1)                   --------->ERF1                   --------->RAP2.3(1)                   --------->ATERF1(1)                  --------->ABI4(1)                  ------>NtERF2                                                       <XXXXXXXXXXXXXX                  <---------ATERF1(1)                                                --------->GLK1(1)                 --------->RAP2.3(3)                                                 --------->At4g35610                 <---------DEAR3(1)                                                  <---------GLK1(1)                 --------->DEAR3(1)                                                  <---------At4g35610                 --------->RAP2.3(2)                                                 <XXXXXXXXXXXXXXX                 --------->ATERF1(2)                                         <---------YAB1                 <---------ATERF1(2)                                      --------->TGA2(2)                 --------->ANAC46                                        <-----------TGA1                --------->ERF1  <----------CDC5                         --------->ANAC46                --------->DEAR4(2)                                      <---------bZIP60(1)                --------->RAP2.3(1)                                     <---------TGA2(1)                --------->ORA47(2)                                      <---------ANAC55(2)                --------->ATERF1(1)                                     --------->TGA2(1)               <---------ATERF1(1)       <---------TOE2(3)              --------->ANAC58           <---------ARR14(2) --------->ANAC58                          --------->ANAC55(2)           <---------GLK1(2)  --------->ANAC58  <---------At4g35610     --------->bZIP60(1)           --------->ARR14(2) --------->ANAC46 <---------TOE1(3)        --------->ANAC58            < -->MYB46(3)   <---------RAP2.3(1)   ----------->RAV1(2)               <-----------STF1   <----------DOF2   acctagagtacccgattcgccgccgcaactagacgctaagcctgaggttaagctaagcgaagatggattaacttacgtcatcaatggagctcctttcgaa  8652000  Previous    Next  AGI:  At2g20020.1    Description:  Identical to CRS2-associated factor 1, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SL79;GB:Q94AQ2); similar to ATCAF2/CAF2 (ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2) [Arabidopsis thaliana] (TAIR:AT1G23400.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65472.1); contains InterPro domain CRS1/YhbY (InterPro:IPR001890) Range:  from: 8651467    to: 8654272    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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