Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                          <-----------GT1                                   --------->YAB1        <---------GLK1(2) <---------HSFB2a(2)              <---------YAB1         --------->ARR14(2) --------->HSFB2a(2)             <-----------GT1   <---------MYB46(3)      <<<<<<<<<TBF1 ------>ZmHOX2a(1)              <-----------GT1    --------->MYB52(2)   <<<<<<<<<TBF1 >ZmHOX2a(1)                   <---------AHL20(2) --------->SPL7<---------ALFIN1                   <- -->TOE2(3)     <-------TEIL   --------->AHL20(2)<---------MYB52(1)<----------DOF2                 <-   atcctcgaagaagcttgattcatgctgcgaaaatttatcatttttcttcccgttcgtcggaatctcacactttcttcttcttctctcttacttcagaatt  8619600                                                   <---------WOX13(1)                                                  <------------CBF                                                 --------->ATHB12                                   -   <--------P--------->AHL20(2)             <---------MYB52(1)                                    --- --------TOE1(3)                           <<<<<<<<<<AtWER       <---------TOE2(3)         <------ZmHOX2a(1) --------TOE2(3)    --------------->AGL15 <---------ZAT6       ----------->HVH21          -----------   taagggttgccaaaaaaaaatacccagtagagaaacagtttctactgttagtgattggatttgatttgacgatgacacaagaagaaacagagaggaaata  8619700                                                                   ------>NtERF2                                                                 ---------->ID1          <----------DOF2                                       <---------RAP2.3(1)          <---------DAG2                                 --------->MYB46(3)    <---------DEAR3(1)               <------------CBF  --------->MYB52(1)                 ------->TEIL    --------->ETT(1)           <-----------GT1         <-----------GT1                 <---------YAB1  <-----------HVH21        <----------DOF2            ----------->HVH21     --------->ANAC55(2) -------->DAG2       --------->ARR11(3)             --------->At4g35610     --------->ANAC58 ------->DOF2        <---------GLK1(2)              <---------At4g35610     --------->ANAC58   <----- >GT1 <------NtERF2  <---------ARR11(3)          <-------TEIL  <---------DEAR3(1)<---------WOX13(1)   aaaaggtcggagctttttctctagattttcttttgactccattgaaacaaattcatctaaccgcttcggcgcttactcaagtaattgacatgaatgcctt  8619800                                           --------->MYB46(3)                                      <-----------HVH21                                      <-----------TGA1                                     <---------bZIP60(1)                             --------->ARR14(2)           --------->ANAC58                             <---------ARR11(3)      --------->ANAC46                             <---------GLK1(2)       --------->ANAC58                             <---------ARR14(2)      ------->GAMYB  <---------ANAC46                <                     ---------->DOF2 --------->bZIP60(1)  --------->ANAC58                       ---- -----DOF2        <---------MYB59   ---------->ID1   --------->ANAC58                --------->AHL20(2)   tactcttagtctgggaattaccaaaatgccagatttttgtcgtcacccgatgcaaacgccaagacatatcgcgttttctgcaaacgattaattcgtcgat  8619900                                                         --------->DEAR3(1)                                                        --------->DEAR4(2)                                                        <------NtERF2                                                       <---------ATERF1(1)                                                       ------>NtERF2                                                      <---------ALFIN1                         <---------ZAT14             <---------ABI4(2)                         --------->ZAT14           --------->ANAC58                    <---------ANAC58               --------->ANAC58                    <---------ANAC58        <-----------------AGL1           <---------ALFIN1    --------->MYB52(1)  --------->ANAC46                             <----          --------->MYB46(3)  <---------ZAT14 ----------->HVH21                               <------     <--------P     <---------ANAC46        ----------------->AGL1 <------MYB46(1)  <---------At4g35610  --------->LBD16<--------P   --------->ZAT14--------->LBD16       <------MYB83     <---------ZAT2 ---------LBD16 <---------MYB52(1)        <------ZmHOX2a(2) <----------DOF2         --------->ZAT2 ------>DOF2<---------LBD16   <---------WRKY12--------->LBD16 <---------YAB1        --------->At4g35610   aaaccgggttgaaccacgggtagcctgttcagtaaacgggttcgatccctgaaacggcaccgctttgataggttttaagtagggctagctgaaacgtcgt  8620000        <---------ARR14(2)      <----------DOF2     *TSS  <---------ANAC58                                                <---------ANAC46     <---------ANAC58                                                 <---------ALFIN1     <---------ANAC46                  <---------At4g35610            --------->AtMYB61     <---------ANAC58       <---------ANAC46                       ------>NtERF2 <---------ANAC58      <----------DOF2 --------->At4g35610        ----------->HVH21 <---------ANAC58   --------->GLK1(2) <-----------RAV1(1)         --------->DEAR3(1)           <----- --NtERF2  <---------ANAC58 <---------ANAC58                      <---------ETT(1)          --------- ---DEAR3(1)  --------->SPL7<---------ANAC58          --------->LBD16--------->MYB46(3)     ---------   cgttcttgcgttttcgtcccacaatctttgtcgtggttttctgctgtcttcttctccgtcgaacttctccgaccacttcgtatagagagagagagtgacg  8620100                                 <---------WOX13(1)                               --------->ATHB51       --------->LBD16         <---------ICU4      <---------ANAC46         --------->ATHB12     <---------LBD16          <---------YAB1   <---------ZAT14            --------->ICU4   <---------ARR14(2)       --------->YAB1 ----ANAC46           <---------ICU4 -->TGA1              --------->ZAT6 -->HVH21<---------MYB52(1) --------->TOE2(3)                   --------->GLK1(2)         ---------->DOF2   aagagtttacgggtatttgtttcatcactaccataattgactctcaatatcaaatcacattgagagaagctaatttcttcttgttcttagcaaaaagatt  8620200                                                <---------ICU4                                                <---------------AtSPL8                                               --------->ICU4                                               <---------YAB1                                             <---------ICU4                                             --------->YAB1    <----------DOF2                                            <---------ATHB51 <------NtERF2                                            --------->ICU4  <---------DEAR3(2)                                            <---------ATHB12------>NtERF2                                      --------->ARR14(2)   <---------DEAR3(1)                                      <---------ARR14(2)  --------->ATERF1(1)                                 --------->GLK1(2)       <-----------HVH21             --------->LBD16    <---------ARR14(2)      <---------ANAC58             ------>ZmHOX2a(1)  <---------GLK1(2)       <---------ANAC58              <---------MYB46(3) <----------DOF2                --------->ARR14(2)      <---------ANAC46    --------->TOE1(2) <------   agtctttttttgttcctgaattttgttttttgcagaatcgaatccaataatgagtactgcgtcggcttttagttcaatccaaggatgctggttcaaggtc  8620300                                         <<<<<<<<<GATA-1                                         <<<<<<<<<GATA-2                               <-----------GT1                  --------->RVE1(1)      <<<<<<<<<GATA-3                 <---------ARR11(3)      <<<<<<<<<GATA-4                <---------ZAT6                 --------->ARR11(3)     --------->ARR14(2)            <---------ANAC46        <------                 --------->GLK1(2)      <---------ARR14(2)     <---------ANAC46             <--------   ------>ZmHOX2a(1)          <-----------GT1                  <---------ANAC58             ---------  --------->TOE2(3)     <---------MYB52(1)       ---------->DOF2   <-----------RAV1(1)   --------->YAB1 -----HVH21     <---------GLK1(2)    <---------ATHB12          <---------ANAC58      <---------YAB1 <   aattcctaaaactcttcaaaatctctgttttttttcccactgaatccacattcaagctcattgtagcttgtgttgtgttattgcaatctgataatcatgt  8620400                                                                                       <---------ANAC58                                                                                   ------->MYC3                                                                                   <-------MYC3                                                                                  --------->O2                                                                                  <---------TGA1a                                                                                  --------->PIF3(3)                                                       --------->ANAC58           <---------O2                                                       --------->ANAC58       ------>ZmHOX2a(2)                                                 ---------->DOF2             <------ZmHOX2a(2)                                                 ===========================================bZIP_DOF                                                <---------ARR14(2)          --------->ARR14(2)                                                --------->ARR14(2)          <---------ARR14(2) ---ANAC55(2)                                <---------ANAC46         <----------DOF2  <---------ANAC58 -ICU4     <----------DOF2   ---------->DOF2<---------LBD16           ======================bZIP_DOF >YAB1     --------------->AGL15            <---------At4g35610  <---------ANAC58 <-----------RAV1(1) -----------RAV1(1)  ---------->DOF2    --------->ALFIN1         <---------ANAC58 --------->TGA1a   aaatgtgggttttctttgttttgaaaagggcgaaaggaaaatgtgtagcggataagcgagccaagaggcttactttgggatcccatgtggcttcgccatc  8620500  Previous    Next  AGI:  At2g19930.1    Description:  RNA-dependent RNA polymerase family protein. similar to RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] (TAIR:AT2G19920.1); similar to RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] (TAIR:AT2G19910.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65457.1); similar to hypothetical protein OsJ_000727 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10902.1); contains InterPro domain RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855) Range:  from: 8614422    to: 8619523    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At2g19940.1    Description:  semialdehyde dehydrogenase family protein. Identical to Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor [Arabidopsis Thaliana] (GB:Q93Z70;GB:O82187); similar to unnamed protein product [Vitis vinifera] (GB:CAO47751.1); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Semialdehyde dehydrogenase, dimerisation region; (InterPro:IPR012280); contains InterPro domain N-acetyl-gamma-glutamyl-phosphate reductase; (InterPro:IPR000706); contains InterPro domain Semialdehyde dehydrogenase, NAD-binding; (InterPro:IPR000534) Range:  from: 8620005    to: 8623099    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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