Home Tools   - Search   - Colocalization   - Gene Analysis   - Gene Identification   - Small RNA Targets   - MicroRNA Targets Description Documentation Citations Downloads Publications History Contact Links Disclaimer	Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                           --------->MYB46(3)                                                        <------ZmHOX2a(2)                                                       <---------ARR14(2)                                                       <---------ARR11(3)                                                       --------->ARR14(2)                           -  --------->ANAC58                                     --------->ARR11(3)                           -  --------->ANAC58                 --------->DAG2      --------->AGP1                               - --------GLK1(2)                  ---------->DOF2    ----------->ARR10                          <---- ------->ARR14(2)          ---------->DOF2       ------->TEIL                                   ----- --------ARR14(2)        --------->MYB46(3)  <---------------AtSPL8                 --------->TOE1(2) --->GAMYB              --------->ANAC58     <---------KAN4(2)                    ------->TEIL  <---- -->MYB52(1)            --------->ANAC58   ====================HOX2a_HOX2a   <---------AtLEC2   ----- ---->RAV1(1)           --------->ANAC46   <------ZmHOX2a(1)             <----------DOF2<------ZmHOX2a(1)   agaaacgccttcttgaattcaagttcacccaaagctaaaagcggaggaatgtacttagatccaccattttcttctcttttcatgaacttaggagagggag  8607400     <---------ATHB12 --------------->AGL15 <---------------AGL15                                                                 <---------ARR14(2) ---------------->AGL1          >>>>>>>>>>WRKY38                                       --------->ARR11(3) ---------------->AG            >>>>>>>>>>WRKY26                                       <---------GLK1(2) ---------------->AGL3          >>>>>>>>>>WRKY43                                       --------->ARR14(2) -----HSFC1(2)                 --------->WRKY38(1)                                <-----------HVH21 ---->HSFB2a(1)                --------->WRKY12                              --------->ANAC58 -----HSFB2a(1)     --------->At4g35610                                      --------->ANAC58  ------ ---->HSFC1(2)   <---------At4g35610      --------->YAB1               ----------->RAV1(1)    <------   tttccaaatcaagagacacatctgctaaaacaattgaccaatactcataaataaaactctagagcatataaaacaacacaagcccatcagatactgactg  8607500                                            --------->ZAT18                                   <---------HSFB2a(2)                  --------->ALFIN1                                   --------->HSFC1(1)                   <------NtERF2                                   >>>>>>>ZML2                        <---------ANAC58                 <---------------AGL15      <---------ZAT14           <---------ANAC58                 --------------->AGL15      --------->ZAT14           <---------ANAC46                 <---------DAG2    --------->HSFB2a(2)            <-----------RAV1(2)           --------->AtLEC2    --------->GLK1(1)                  ==============================RAV      --------->ANAC58       <------ZmHOX2a(1)               <------NtERF2      --------->ANAC58    <-----------RAV1(2)               --------->LBD16 ----->HVH21     <----------DOF2   <---------HSFC1(1)       ------>NtERF2           ----------->RAV1(1) ---WOX13(1)    <-----------------AGL3<------ZmHOX2a(1)   <---------LBD16--------->REM1(2)         <-   accttgagaagccctgcaactttttttggcaggagttctaggagactgtactggagactcgccgggactcaggcgtggagagccatcaacagtgactgtc  8607600                                         <---------RAP2.6(2)                  <-----------GT1       --------->RAP2.6(3)             --------->ICU4           --------->ARR14(2)                            ------>ZmHOX2a(1)             <---------YAB1           <---------ARR14(2)                --------->LBD16  --------->GLK1(1)           <---------ANAC55(2)<---------ARR14(2)                       <---------HSFB2a(2)           --------->ANAC55(2)--------->ARR14(2)                       --------->HSFB2a(2)          <-------TEIL        --------->ARR11(3)             ------>ZmHOX2a(1)     --------->TOE2(3) ---------DOF2--------->ATHB12<---------ARR11(3)            --------->TOE2(3)   --------->ARR14(2)   cctttaacaaaatacatgattaacccatcgagggtcttcaaatacggcttattgaaaactttcctaagtgtttccagagccaattcctcagaaatcgaag  8607700                                                              ----------->RAV1(1)                                                     <---------GLK1(2)                                                     <---------ARR11(3)                                                     --------->ARR14(2)                                                     <---------ARR14(2)                                                   <---------TOE1(2)                             ----                       --------->MYB52(1)      --------->HSFB2a(2)                               ----                  <---------ALFIN1             <---------HSFB2a(2)                            ------>ZmHOX2a(2)                <---------ALFIN1    --------->ATHB12 --------->ARR11(3)               ---------->DOF2               <---------REM1(2)   --------->ICU4  <---------TOE2(2)              <---------HSFB2a(2)            ---------->ARF1        <---------YAB1  ----------->ARR10       --------->ZAT6    <------ZmHOX2a(2)   aaagttttcgccttgtctccacacttatcggaagacgatgattgtgtttctcgtagattttctccaacattgtttcaacactacccagaagagcgatctc  8607800                                                                                                 <---                                                                                              -------     <------NtERF2                                                                   --------->AHL20(1)    --------->LBD16                                                                  --------->ARR11(3)  --------->At4g35610                                                                <---------AHL20(2)  <---------At4g35610                        --------->LBD16                         <---------AHL20(1)  <---------LBD16                <---------ICU4                                   --------->AHL20(2) ----->WRKY12                   <---------YAB1  ---------->DOF2                --------->YAB1 <------ ------->HVH21       ------>NtERF2     <-----------GT1                        <-------TEIL ----------   tgaccgcggagagacttcatcgcagccattgttcatcattttttctccccaaaatcggagtcagtgtctataatctagggttcataatatatagccctag  8607900                                                                      ----------------->AGL3                                                                     ------------------------>ANAC81                                <----------DOF2                <---------MYB52(1)                               <---------ANAC58               ------>ZmHOX2a(1)                               <---------ANAC58               <----------DOF2 ------ZAT6                <------------CBF       ---------->DOF2<---------TOE2(3)   --------->MYB52(1) -->STY1(1)           <---------LBD16  ------>NtERF2       ---------->ID1     <----------ID1 ---STY1(1)         --------->ZAT6  --------->At4g35610  <---------ANAC58     ----------->GT1 ------->AGL1     <-----------GT1   <---------At4g35610  <---------ANAC58   ---------->DOF2     <----   tgggaagagagaaacttgtttaactctggaattgcttttgctgccattttctcaaagtttcgtcctttaggtttcaaaaaaagaaaaaaacagaagtttt  8608000                                                  --------->ANAC46                                                  --------->ANAC58                                                  --------->ANAC58                                                 <---------ZAT18                                                 <---------ZAT14                                    -                                                 --------->ZAT14                 <---------ICU4     -                                       --------->AHL20(2)                    --------->AHL20(2)     -                              <---------LBD16    --------->SPL7              <---------AHL20(2)    --                            <---------REM1(2)    --------->ZAT18         <---------AHL20(2)        <-                            <---------ZAT14  --------------->AtSPL8      --------->AHL20(2)        <-                            --------->ZAT14  --------------->AtSPL3   <---------AHL20(2)          ---                   --------->ATHB12  <-----------TBP                 <---------AHL20(2)           ---   <---------ARR14(2)   <-----------GT1<---------AHL20(2)            --------->AHL20(2)           --- -----ANAC46    <----------DOF2--------->ANAC46<---------SPL7   <---------MYB52(1)     --------->YAB1   gtgtaaatctgtttgatactttgatttgactacacggagatttatatgcagtacgctattctagccgtttattaattttttaatttttatcaaaatgccc  8608100                                                      --------->ANAC46                                                     <---------LBD16                                             <------NtERF2                                            --------->At4g35610                                            <---------At4g35610                                            <---------ATERF1(1)                                            ------>NtERF2                                           <---------DEAR3(1)                                          <------NtERF2                                          --------->RAP2.3(1)                                          --------->ATERF1(1)                                         ------>NtERF2--------->ANAC58                                         <---------ATERF1(1)                                         --------->LBD16                                         <---------RAP2.3(1)                                         <---------DEAR4(2)   --------->ZAT6                        <---------ORA47(2)   <---------ICU4                        <---------ERF1 -------->AtMYB61                       <---------RAP2.3(3) ------>GAMYB                           <---------RAP2.3(2) -------->YAB1                          --------->ATERF1(2)            --------->ARR14(2) ------->MYB46(3)                       <---------DEAR3(1)--------->ANAC58 --------ATHB12           --------->ZAT6--------->DEAR3(1)--------->ANAC58 --------MYB55(2)   --------->ARR14(2)  <---------ATERF1(2)          <----------DOF2             ---- --->MYB83          <---------ARR14(2) --------->ATERF1(1)----------->GT1                        <--- --->MYB46(1)       --------->GLK1(2)  <---------LBD16--------->ANAC58 <---------ARR14(2)        <--- ----->P       <-----------GT1  <----------DOF2      >>>>>>>>>>AtSR1<---------ANAC46  ---------->ID1   aaccatcactactatatttacaaatctgccactactttctcgccggcgctgcaaacgcgcaagtaaaatcgcgttttcggactattttgtctcattgcat  8608200                                                                                       --------->ANAC58                                                                                       --------->ANAC58           --------->AHL20(2)                                           <---------AHL20(2)       --------->ATHB51                                                 --------->AHL20(2)       --------->AHL20(2)                                --------->At4g35610       --------->YAB1       <---------AHL20(2)--------->YAB1                  ----------->RAV1(2) --------->ATHB12 ----->ARR14(2)         <-------TEIL     <---------TOE2(3)             <---------AHL20(2) ------ICU4<---------AHL20(2) <-----------GT1          <---------ALFIN1--------->AHL20(2)    <------- ------ARR14(2)     ------->TEIL         <---------TOE1(3)       ----------->GT1  <---------YAB1   aatcgcgaattatttatatatgcacattcatattacaagtttcaaggttacaaaaacacacctgcagaggtaattttattcattgtcataagcatttatt  8608300  Previous    Next  AGI:  At2g19910.1    Description:  RNA-dependent RNA polymerase family protein. similar to RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] (TAIR:AT2G19920.1); similar to RNA-dependent RNA polymerase family protein [Arabidopsis thaliana] (TAIR:AT2G19930.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO65457.1); similar to hypothetical protein OsJ_000727 [Oryza sativa (japonica cultivar-group)] (GB:EAZ10902.1); contains InterPro domain RNA-dependent RNA polymerase, eukaryotic-type (InterPro:IPR007855) Range:  from: 8602902    to: 8607839    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.
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